data_3CLY # _model_server_result.job_id 8rTeD2GEZzrzSPyAIrx8tw _model_server_result.datetime_utc '2025-07-13 13:18:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cly # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1802}' # _entry.id 3CLY # _exptl.entry_id 3CLY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CLY _cell.length_a 55.437 _cell.length_b 68.462 _cell.length_c 85.711 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CLY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1,2 A,B,C,D,E 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_645 -x+1,y-1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 55.437 -34.231 42.8555 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 211 A ASP 1655 1_555 A N PTR 212 A PTR 1656 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C PTR 212 A PTR 1656 1_555 A N PTR 213 A PTR 1657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A C PTR 213 A PTR 1657 1_555 A N LYS 214 A LYS 1658 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OD1 ASN 187 A ASN 1631 1_555 B MG MG . A MG 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc2 A OD2 ASP 200 A ASP 1644 1_555 B MG MG . A MG 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc3 B MG MG . A MG 1801 1_555 D O2A ACP . A ACP 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc4 B MG MG . A MG 1801 1_555 D O1G ACP . A ACP 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc5 B MG MG . A MG 1801 1_555 E O HOH . A HOH 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc6 B MG MG . A MG 1801 1_555 E O HOH . A HOH 1902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc7 C MG MG . A MG 1802 1_555 D O2B ACP . A ACP 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3CLY _atom_sites.fract_transf_matrix[1][1] 0.018038 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011667 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1801 301 MG MG . C 2 MG A 1 1802 302 MG MG . D 3 ACP A 1 1803 300 ACP PCP . E 4 HOH A 1 1901 1 HOH HOH . E 4 HOH A 2 1902 2 HOH HOH . E 4 HOH A 3 1903 3 HOH HOH . E 4 HOH A 4 1904 4 HOH HOH . E 4 HOH A 5 1905 5 HOH HOH . E 4 HOH A 6 1906 6 HOH HOH . E 4 HOH A 7 1907 7 HOH HOH . E 4 HOH A 8 1908 8 HOH HOH . E 4 HOH A 9 1909 9 HOH HOH . E 4 HOH A 10 1910 10 HOH HOH . E 4 HOH A 11 1911 11 HOH HOH . E 4 HOH A 12 1912 12 HOH HOH . E 4 HOH A 13 1913 13 HOH HOH . E 4 HOH A 14 1914 14 HOH HOH . E 4 HOH A 15 1915 15 HOH HOH . E 4 HOH A 16 1916 16 HOH HOH . E 4 HOH A 17 1917 17 HOH HOH . E 4 HOH A 18 1918 18 HOH HOH . E 4 HOH A 19 1919 19 HOH HOH . E 4 HOH A 20 1920 20 HOH HOH . E 4 HOH A 21 1921 21 HOH HOH . E 4 HOH A 22 1922 22 HOH HOH . E 4 HOH A 23 1923 23 HOH HOH . E 4 HOH A 24 1924 24 HOH HOH . E 4 HOH A 25 1925 25 HOH HOH . E 4 HOH A 26 1926 26 HOH HOH . E 4 HOH A 27 1927 27 HOH HOH . E 4 HOH A 28 1928 28 HOH HOH . E 4 HOH A 29 1929 29 HOH HOH . E 4 HOH A 30 1930 30 HOH HOH . E 4 HOH A 31 1931 31 HOH HOH . E 4 HOH A 32 1932 32 HOH HOH . E 4 HOH A 33 1933 33 HOH HOH . E 4 HOH A 34 1934 34 HOH HOH . E 4 HOH A 35 1935 35 HOH HOH . E 4 HOH A 36 1936 36 HOH HOH . E 4 HOH A 37 1937 37 HOH HOH . E 4 HOH A 38 1938 38 HOH HOH . E 4 HOH A 39 1939 39 HOH HOH . E 4 HOH A 40 1940 40 HOH HOH . E 4 HOH A 41 1941 41 HOH HOH . E 4 HOH A 42 1942 42 HOH HOH . E 4 HOH A 43 1943 43 HOH HOH . E 4 HOH A 44 1944 44 HOH HOH . E 4 HOH A 45 1945 45 HOH HOH . E 4 HOH A 46 1946 46 HOH HOH . E 4 HOH A 47 1947 47 HOH HOH . E 4 HOH A 48 1948 48 HOH HOH . E 4 HOH A 49 1949 49 HOH HOH . E 4 HOH A 50 1950 50 HOH HOH . E 4 HOH A 51 1951 51 HOH HOH . E 4 HOH A 52 1952 52 HOH HOH . E 4 HOH A 53 1953 53 HOH HOH . E 4 HOH A 54 1954 54 HOH HOH . E 4 HOH A 55 1955 55 HOH HOH . E 4 HOH A 56 1956 56 HOH HOH . E 4 HOH A 57 1957 57 HOH HOH . E 4 HOH A 58 1958 58 HOH HOH . E 4 HOH A 59 1959 59 HOH HOH . E 4 HOH A 60 1960 60 HOH HOH . E 4 HOH A 61 1961 61 HOH HOH . E 4 HOH A 62 1962 62 HOH HOH . E 4 HOH A 63 1963 63 HOH HOH . E 4 HOH A 64 1964 64 HOH HOH . E 4 HOH A 65 1965 65 HOH HOH . E 4 HOH A 66 1966 66 HOH HOH . E 4 HOH A 67 1967 67 HOH HOH . E 4 HOH A 68 1968 68 HOH HOH . E 4 HOH A 69 1969 69 HOH HOH . E 4 HOH A 70 1970 70 HOH HOH . E 4 HOH A 71 1971 71 HOH HOH . E 4 HOH A 72 1972 72 HOH HOH . E 4 HOH A 73 1973 73 HOH HOH . E 4 HOH A 74 1974 74 HOH HOH . E 4 HOH A 75 1975 75 HOH HOH . E 4 HOH A 76 1976 76 HOH HOH . E 4 HOH A 77 1977 77 HOH HOH . E 4 HOH A 78 1978 78 HOH HOH . E 4 HOH A 79 1979 79 HOH HOH . E 4 HOH A 80 1980 80 HOH HOH . E 4 HOH A 81 1981 81 HOH HOH . E 4 HOH A 82 1982 82 HOH HOH . E 4 HOH A 83 1983 83 HOH HOH . E 4 HOH A 84 1984 84 HOH HOH . E 4 HOH A 85 1985 85 HOH HOH . E 4 HOH A 86 1986 86 HOH HOH . E 4 HOH A 87 1987 87 HOH HOH . E 4 HOH A 88 1988 88 HOH HOH . E 4 HOH A 89 1989 89 HOH HOH . E 4 HOH A 90 1990 90 HOH HOH . E 4 HOH A 91 1991 91 HOH HOH . E 4 HOH A 92 1992 92 HOH HOH . E 4 HOH A 93 1993 93 HOH HOH . E 4 HOH A 94 1994 94 HOH HOH . E 4 HOH A 95 1995 95 HOH HOH . E 4 HOH A 96 1996 96 HOH HOH . E 4 HOH A 97 1997 97 HOH HOH . E 4 HOH A 98 1998 98 HOH HOH . E 4 HOH A 99 1999 99 HOH HOH . E 4 HOH A 100 2000 100 HOH HOH . E 4 HOH A 101 2001 101 HOH HOH . E 4 HOH A 102 2002 102 HOH HOH . E 4 HOH A 103 2003 103 HOH HOH . E 4 HOH A 104 2004 104 HOH HOH . E 4 HOH A 105 2005 105 HOH HOH . E 4 HOH A 106 2006 106 HOH HOH . E 4 HOH A 107 2007 107 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 15.246 _atom_site.Cartn_y -1.019 _atom_site.Cartn_z 31.291 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 58.46 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1802 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 429 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #