data_3CM7 # _model_server_result.job_id yidlwAD5q3-FqONFhGO6AQ _model_server_result.datetime_utc '2024-11-14 17:26:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cm7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":4}' # _entry.id 3CM7 # _exptl.entry_id 3CM7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CM7 _cell.length_a 92.39 _cell.length_b 92.39 _cell.length_c 175.151 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CM7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,D,I,J,K,L,M,N,Q,R 1 1 A,E,F,O 2 2 B,G,H,P 2 1 A,E,F,O 3 1 B,G,H,P 4 1 C,I,J,Q 5 1 D,K,L,M,N,R 6 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 77 A CYS 303 1_555 B SG CYS 101 A CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 C SG CYS 125 B CYS 351 1_555 D SG CYS 125 D CYS 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc1 E ZN ZN . C ZN 4 1_555 A SG CYS 74 C CYS 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc2 E ZN ZN . C ZN 4 1_555 A SG CYS 77 C CYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc3 E ZN ZN . C ZN 4 1_555 A NE2 HIS 94 C HIS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc4 E ZN ZN . C ZN 4 1_555 A SG CYS 101 C CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc5 G ZN ZN . A ZN 6 1_555 B SG CYS 74 A CYS 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc6 G ZN ZN . A ZN 6 1_555 B NE2 HIS 94 A HIS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc7 I ZN ZN . B ZN 5 1_555 C SG CYS 74 B CYS 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc8 I ZN ZN . B ZN 5 1_555 C SG CYS 77 B CYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc9 I ZN ZN . B ZN 5 1_555 C NE2 HIS 94 B HIS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc10 I ZN ZN . B ZN 5 1_555 C SG CYS 101 B CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc11 K ZN ZN . D ZN 3 1_555 D SG CYS 74 D CYS 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc12 K ZN ZN . D ZN 3 1_555 D SG CYS 77 D CYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc13 K ZN ZN . D ZN 3 1_555 D NE2 HIS 94 D HIS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc14 K ZN ZN . D ZN 3 1_555 D SG CYS 101 D CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3CM7 _atom_sites.fract_transf_matrix[1][1] 0.010824 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010824 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005709 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN C 1 4 4 ZN ZN . F 3 X22 C 1 600 600 X22 DRG . G 2 ZN A 1 6 6 ZN ZN . H 3 X22 A 1 600 600 X22 DRG . I 2 ZN B 1 5 5 ZN ZN . J 3 X22 B 1 600 600 X22 DRG . K 2 ZN D 1 3 3 ZN ZN . L 3 X22 D 1 700 700 X22 DRG . M 3 X22 D 1 600 600 X22 DRG . N 3 X22 D 1 701 700 X22 DRG . O 4 HOH C 1 9 9 HOH HOH . O 4 HOH C 2 18 18 HOH HOH . O 4 HOH C 3 19 19 HOH HOH . P 4 HOH A 1 14 14 HOH HOH . P 4 HOH A 2 16 16 HOH HOH . P 4 HOH A 3 17 17 HOH HOH . P 4 HOH A 4 25 25 HOH HOH . Q 4 HOH B 1 12 12 HOH HOH . Q 4 HOH B 2 13 13 HOH HOH . Q 4 HOH B 3 15 15 HOH HOH . Q 4 HOH B 4 20 20 HOH HOH . Q 4 HOH B 5 26 26 HOH HOH . Q 4 HOH B 6 27 27 HOH HOH . R 4 HOH D 1 7 7 HOH HOH . R 4 HOH D 2 8 8 HOH HOH . R 4 HOH D 3 22 22 HOH HOH . R 4 HOH D 4 24 24 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x -31.744 _atom_site.Cartn_y -16.927 _atom_site.Cartn_z -21.191 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 4 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #