data_3CMP # _model_server_result.job_id upkQQtR-CP3j-m4oP3OvCQ _model_server_result.datetime_utc '2024-11-29 01:23:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cmp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":182}' # _entry.id 3CMP # _exptl.entry_id 3CMP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CMP _cell.length_a 114.908 _cell.length_b 114.908 _cell.length_c 118.832 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CMP _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,X 1 1 B,J,K,L,M,Y 2 1 C,N,O,P,Q,R,S,T,U,V,W,Z 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 K N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 76 1_555 A SG CYS 195 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? disulf ? disulf2 B SG CYS 96 B CYS 76 1_555 B SG CYS 195 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 C SG CYS 96 C CYS 76 1_555 C SG CYS 195 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 D FE FE . A FE 179 1_555 H O4 EB4 . A EB4 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc2 D FE FE . A FE 179 1_555 H O1 EB4 . A EB4 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc3 D FE FE . A FE 179 1_555 H O5 EB4 . A EB4 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc4 D FE FE . A FE 179 1_555 H O2 EB4 . A EB4 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc5 D FE FE . A FE 179 1_555 H O3 EB4 . A EB4 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc6 J FE FE . B FE 179 1_555 L O3 DBH . B DBH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc7 J FE FE . B FE 179 1_555 M O6 DBH . B DBH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc8 J FE FE . B FE 179 1_555 M O3 DBH . B DBH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc9 C OH TYR 158 C TYR 138 1_555 O NA NA . C NA 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? metalc ? metalc10 N FE FE . C FE 179 1_555 U O2 EB4 . C EB4 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc11 N FE FE . C FE 179 1_555 U O5 EB4 . C EB4 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc12 N FE FE . C FE 179 1_555 U O3 EB4 . C EB4 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc13 N FE FE . C FE 179 1_555 U O1 EB4 . C EB4 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc14 N FE FE . C FE 179 1_555 U O4 EB4 . C EB4 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc15 N FE FE . C FE 179 1_555 U O6 EB4 . C EB4 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3CMP _atom_sites.fract_transf_matrix[1][1] 0.008703 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008703 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008415 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FE A 1 179 1 FE FE . E 3 NA A 1 180 4 NA NA . F 4 SO4 A 1 181 1 SO4 SO4 . G 4 SO4 A 1 182 2 SO4 SO4 . H 5 EB4 A 1 183 1 EB4 EB4 . I 6 GOL A 1 184 1 GOL GOL . J 2 FE B 1 179 2 FE FE . K 3 NA B 1 180 2 NA NA . L 7 DBH B 1 303 303 DBH DBH . M 7 DBH B 1 304 303 DBH DBH . N 2 FE C 1 179 3 FE FE . O 3 NA C 1 180 1 NA NA . P 3 NA C 1 181 3 NA NA . Q 3 NA C 1 182 5 NA NA . R 3 NA C 1 183 6 NA NA . S 3 NA C 1 184 7 NA NA . T 4 SO4 C 1 185 3 SO4 SO4 . U 5 EB4 C 1 186 1 EB4 EB4 . V 6 GOL C 1 187 2 GOL GOL . W 6 GOL C 1 188 3 GOL GOL . X 8 HOH A 1 185 4 HOH HOH . X 8 HOH A 2 186 5 HOH HOH . X 8 HOH A 3 187 6 HOH HOH . X 8 HOH A 4 188 7 HOH HOH . X 8 HOH A 5 189 16 HOH HOH . X 8 HOH A 6 190 17 HOH HOH . X 8 HOH A 7 191 18 HOH HOH . X 8 HOH A 8 192 19 HOH HOH . X 8 HOH A 9 193 21 HOH HOH . X 8 HOH A 10 194 27 HOH HOH . X 8 HOH A 11 195 32 HOH HOH . X 8 HOH A 12 196 34 HOH HOH . X 8 HOH A 13 197 35 HOH HOH . X 8 HOH A 14 198 41 HOH HOH . X 8 HOH A 15 199 43 HOH HOH . X 8 HOH A 16 200 45 HOH HOH . X 8 HOH A 17 201 48 HOH HOH . X 8 HOH A 18 202 51 HOH HOH . X 8 HOH A 19 203 55 HOH HOH . X 8 HOH A 20 204 56 HOH HOH . X 8 HOH A 21 205 60 HOH HOH . X 8 HOH A 22 206 63 HOH HOH . X 8 HOH A 23 207 67 HOH HOH . X 8 HOH A 24 208 72 HOH HOH . X 8 HOH A 25 209 73 HOH HOH . X 8 HOH A 26 210 75 HOH HOH . X 8 HOH A 27 211 76 HOH HOH . X 8 HOH A 28 212 85 HOH HOH . X 8 HOH A 29 213 87 HOH HOH . X 8 HOH A 30 214 92 HOH HOH . X 8 HOH A 31 215 93 HOH HOH . X 8 HOH A 32 216 97 HOH HOH . X 8 HOH A 33 217 98 HOH HOH . X 8 HOH A 34 218 102 HOH HOH . X 8 HOH A 35 219 103 HOH HOH . X 8 HOH A 36 220 105 HOH HOH . X 8 HOH A 37 221 106 HOH HOH . Y 8 HOH B 1 305 39 HOH HOH . Y 8 HOH B 2 306 42 HOH HOH . Y 8 HOH B 3 307 46 HOH HOH . Y 8 HOH B 4 308 58 HOH HOH . Y 8 HOH B 5 309 69 HOH HOH . Y 8 HOH B 6 310 70 HOH HOH . Y 8 HOH B 7 311 81 HOH HOH . Y 8 HOH B 8 312 83 HOH HOH . Y 8 HOH B 9 313 89 HOH HOH . Z 8 HOH C 1 189 3 HOH HOH . Z 8 HOH C 2 190 9 HOH HOH . Z 8 HOH C 3 191 10 HOH HOH . Z 8 HOH C 4 192 11 HOH HOH . Z 8 HOH C 5 193 13 HOH HOH . Z 8 HOH C 6 194 14 HOH HOH . Z 8 HOH C 7 195 20 HOH HOH . Z 8 HOH C 8 196 22 HOH HOH . Z 8 HOH C 9 197 23 HOH HOH . Z 8 HOH C 10 198 24 HOH HOH . Z 8 HOH C 11 199 26 HOH HOH . Z 8 HOH C 12 200 28 HOH HOH . Z 8 HOH C 13 201 29 HOH HOH . Z 8 HOH C 14 202 30 HOH HOH . Z 8 HOH C 15 203 31 HOH HOH . Z 8 HOH C 16 204 33 HOH HOH . Z 8 HOH C 17 205 36 HOH HOH . Z 8 HOH C 18 206 37 HOH HOH . Z 8 HOH C 19 207 40 HOH HOH . Z 8 HOH C 20 208 44 HOH HOH . Z 8 HOH C 21 209 49 HOH HOH . Z 8 HOH C 22 210 50 HOH HOH . Z 8 HOH C 23 211 52 HOH HOH . Z 8 HOH C 24 212 53 HOH HOH . Z 8 HOH C 25 213 57 HOH HOH . Z 8 HOH C 26 214 59 HOH HOH . Z 8 HOH C 27 215 61 HOH HOH . Z 8 HOH C 28 216 62 HOH HOH . Z 8 HOH C 29 217 64 HOH HOH . Z 8 HOH C 30 218 66 HOH HOH . Z 8 HOH C 31 219 68 HOH HOH . Z 8 HOH C 32 220 71 HOH HOH . Z 8 HOH C 33 221 74 HOH HOH . Z 8 HOH C 34 222 77 HOH HOH . Z 8 HOH C 35 223 78 HOH HOH . Z 8 HOH C 36 224 79 HOH HOH . Z 8 HOH C 37 225 80 HOH HOH . Z 8 HOH C 38 226 86 HOH HOH . Z 8 HOH C 39 227 88 HOH HOH . Z 8 HOH C 40 228 90 HOH HOH . Z 8 HOH C 41 229 91 HOH HOH . Z 8 HOH C 42 230 94 HOH HOH . Z 8 HOH C 43 231 99 HOH HOH . Z 8 HOH C 44 232 100 HOH HOH . Z 8 HOH C 45 233 101 HOH HOH . Z 8 HOH C 46 234 107 HOH HOH . Z 8 HOH C 47 235 108 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Q _atom_site.label_entity_id 3 _atom_site.Cartn_x 42.008 _atom_site.Cartn_y 65.331 _atom_site.Cartn_z 40.717 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.1 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 182 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #