data_3CMU # _model_server_result.job_id p-MsyK3EhqomMka8nGkFdQ _model_server_result.datetime_utc '2025-09-16 17:17:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cmu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1502}' # _entry.id 3CMU # _exptl.entry_id 3CMU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3CMU _cell.length_a 156 _cell.length_b 156 _cell.length_c 211 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CMU _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OG1 THR 48 A THR 73 1_555 C MG MG . A MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc2 C MG MG . A MG 500 1_555 O O1B ADP . A ADP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc3 B OG1 THR 397 A THR 1073 1_555 E MG MG . A MG 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc4 E MG MG . A MG 1500 1_555 P O1B ADP . A ADP 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc5 B OG1 THR 746 A THR 2073 1_555 G MG MG . A MG 2500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc6 G MG MG . A MG 2500 1_555 Q O1B ADP . A ADP 2502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc7 B OG1 THR 1095 A THR 3073 1_555 I MG MG . A MG 3500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc8 I MG MG . A MG 3500 1_555 R O1B ADP . A ADP 3502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc9 B OG1 THR 1441 A THR 4073 1_555 K MG MG . A MG 4500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc10 K MG MG . A MG 4500 1_555 S O1B ADP . A ADP 4502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc11 B OG1 THR 1789 A THR 5073 1_555 M MG MG . A MG 5500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc12 M MG MG . A MG 5500 1_555 T O1B ADP . A ADP 5502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 3CMU _atom_sites.fract_transf_matrix[1][1] 0.00641 _atom_sites.fract_transf_matrix[1][2] 0.003701 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004739 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 500 500 MG MG . D 4 ALF A 1 501 501 ALF ALF . E 3 MG A 1 1500 1500 MG MG . F 4 ALF A 1 1501 1501 ALF ALF . G 3 MG A 1 2500 2500 MG MG . H 4 ALF A 1 2501 2501 ALF ALF . I 3 MG A 1 3500 3500 MG MG . J 4 ALF A 1 3501 3501 ALF ALF . K 3 MG A 1 4500 4500 MG MG . L 4 ALF A 1 4501 4501 ALF ALF . M 3 MG A 1 5500 5500 MG MG . N 4 ALF A 1 5501 5501 ALF ALF . O 5 ADP A 1 502 502 ADP ADP . P 5 ADP A 1 1502 1502 ADP ADP . Q 5 ADP A 1 2502 2502 ADP ADP . R 5 ADP A 1 3502 3502 ADP ADP . S 5 ADP A 1 4502 4502 ADP ADP . T 5 ADP A 1 5502 5502 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . P 5 -21.725 -55.058 158.194 1 195.92 ? PB ADP 1502 A 1 HETATM 2 O O1B ADP . . . P 5 -21.525 -54.932 159.692 1 191.98 ? O1B ADP 1502 A 1 HETATM 3 O O2B ADP . . . P 5 -22.009 -56.455 157.711 1 196.1 ? O2B ADP 1502 A 1 HETATM 4 O O3B ADP . . . P 5 -20.686 -54.318 157.388 1 196.05 ? O3B ADP 1502 A 1 HETATM 5 P PA ADP . . . P 5 -24.294 -54.075 158.798 1 198.59 ? PA ADP 1502 A 1 HETATM 6 O O1A ADP . . . P 5 -24.655 -55.412 159.379 1 198.76 ? O1A ADP 1502 A 1 HETATM 7 O O2A ADP . . . P 5 -23.824 -52.976 159.715 1 200.12 ? O2A ADP 1502 A 1 HETATM 8 O O3A ADP . . . P 5 -23.084 -54.294 157.761 1 197.15 ? O3A ADP 1502 A 1 HETATM 9 O O5' ADP . . . P 5 -25.549 -53.529 157.945 1 198.1 ? O5' ADP 1502 A 1 HETATM 10 C C5' ADP . . . P 5 -26.302 -54.391 157.094 1 197.81 ? C5' ADP 1502 A 1 HETATM 11 C C4' ADP . . . P 5 -27.384 -53.626 156.342 1 198.3 ? C4' ADP 1502 A 1 HETATM 12 O O4' ADP . . . P 5 -28.12 -52.834 157.274 1 199.22 ? O4' ADP 1502 A 1 HETATM 13 C C3' ADP . . . P 5 -26.793 -52.685 155.295 1 198.47 ? C3' ADP 1502 A 1 HETATM 14 O O3' ADP . . . P 5 -27.531 -52.734 154.068 1 197.84 ? O3' ADP 1502 A 1 HETATM 15 C C2' ADP . . . P 5 -26.908 -51.31 155.908 1 198.91 ? C2' ADP 1502 A 1 HETATM 16 O O2' ADP . . . P 5 -27.128 -50.305 154.916 1 197.64 ? O2' ADP 1502 A 1 HETATM 17 C C1' ADP . . . P 5 -28.065 -51.457 156.889 1 200.56 ? C1' ADP 1502 A 1 HETATM 18 N N9 ADP . . . P 5 -27.838 -50.596 158.073 1 201.29 ? N9 ADP 1502 A 1 HETATM 19 C C8 ADP . . . P 5 -26.726 -50.567 158.834 1 201.54 ? C8 ADP 1502 A 1 HETATM 20 N N7 ADP . . . P 5 -26.837 -49.656 159.836 1 201.5 ? N7 ADP 1502 A 1 HETATM 21 C C5 ADP . . . P 5 -28.048 -49.081 159.722 1 201.79 ? C5 ADP 1502 A 1 HETATM 22 C C6 ADP . . . P 5 -28.809 -48.032 160.453 1 201.69 ? C6 ADP 1502 A 1 HETATM 23 N N6 ADP . . . P 5 -28.253 -47.421 161.535 1 201.25 ? N6 ADP 1502 A 1 HETATM 24 N N1 ADP . . . P 5 -30.065 -47.721 160.004 1 201.78 ? N1 ADP 1502 A 1 HETATM 25 C C2 ADP . . . P 5 -30.618 -48.335 158.928 1 201.91 ? C2 ADP 1502 A 1 HETATM 26 N N3 ADP . . . P 5 -29.97 -49.291 158.219 1 202.33 ? N3 ADP 1502 A 1 HETATM 27 C C4 ADP . . . P 5 -28.71 -49.703 158.556 1 201.96 ? C4 ADP 1502 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #