data_3CMV
#
_model_server_result.job_id            q1NaOkIKtLB1BJqg8Cyj4Q 
_model_server_result.datetime_utc      '2024-11-26 02:00:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3cmv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"VA","auth_seq_id":3400}' 
#
_entry.id    3CMV 
#
_exptl.entry_id    3CMV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    32 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3CMV 
_cell.length_a            176.6 
_cell.length_b            189.8 
_cell.length_c            424.3 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CMV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
PISA monomeric 1 author_and_software_defined_assembly 7 
PISA monomeric 1 author_and_software_defined_assembly 8 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,I,J,K,L,M,N,O,P 1 1 
B,Q,R,S,T,U,V,W,X 2 1 
C,Y,Z,AA,BA,CA,DA,EA,FA 3 1 
D,GA,HA,IA,JA,KA,LA,MA,NA 4 1 
E,OA,PA,QA,RA,SA,TA,UA,VA 5 1 
F,WA,XA,YA,ZA,AB,BB,CB,DB 6 1 
G,EB,FB,GB,HB,IB,JB,KB,LB 7 1 
H,MB,NB,OB,PB,QB,RB,SB,TB 8 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 CA N N 
? 3 DA N N 
? 3 EA N N 
? 3 FA N N 
? 3 KA N N 
? 3 LA N N 
? 3 MA N N 
? 3 NA N N 
? 3 SA N N 
? 3 TA N N 
? 3 UA N N 
? 3 VA N N 
? 3 AB N N 
? 3 BB N N 
? 3 CB N N 
? 3 DB N N 
? 3 IB N N 
? 3 JB N N 
? 3 KB N N 
? 3 LB N N 
? 3 QB N N 
? 3 RB N N 
? 3 SB N N 
? 3 TB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 1096 A THR 3073 1_555 L MG MG . A MG 3701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? 
metalc ? metalc2 B OG1 THR 1096 B THR 3073 1_555 T MG MG . B MG 3701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc3 C OG1 THR 1096 C THR 3073 1_555 BA MG MG . C MG 3701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc4 D OG1 THR 1096 D THR 3073 1_555 JA MG MG . D MG 3701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc5 E OG1 THR 1096 E THR 3073 1_555 RA MG MG . E MG 3701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc6 VA O2B ANP . E ANP 3400 1_555 RA MG MG . E MG 3701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc7 F OG1 THR 1096 F THR 3073 1_555 ZA MG MG . F MG 3701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? 
metalc ? metalc8 G OG1 THR 1096 G THR 3073 1_555 HB MG MG . G MG 3701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc9 H OG1 THR 1096 H THR 3073 1_555 PB MG MG . H MG 3701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     3CMV 
_atom_sites.fract_transf_matrix[1][1]    0.005663 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005269 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002357 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 MG A 1 701 701 MG MG . 
J 2 MG A 1 1701 1701 MG MG . 
K 2 MG A 1 2701 2701 MG MG . 
L 2 MG A 1 3701 3701 MG MG . 
M 3 ANP A 1 400 400 ANP ANP . 
N 3 ANP A 1 1400 1400 ANP ANP . 
O 3 ANP A 1 2400 2400 ANP ANP . 
P 3 ANP A 1 3400 3400 ANP ANP . 
Q 2 MG B 1 701 701 MG MG . 
R 2 MG B 1 1701 1701 MG MG . 
S 2 MG B 1 2701 2701 MG MG . 
T 2 MG B 1 3701 3701 MG MG . 
U 3 ANP B 1 400 400 ANP ANP . 
V 3 ANP B 1 1400 1400 ANP ANP . 
W 3 ANP B 1 2400 2400 ANP ANP . 
X 3 ANP B 1 3400 3400 ANP ANP . 
Y 2 MG C 1 701 701 MG MG . 
Z 2 MG C 1 1701 1701 MG MG . 
AA 2 MG C 1 2701 2701 MG MG . 
BA 2 MG C 1 3701 3701 MG MG . 
CA 3 ANP C 1 400 400 ANP ANP . 
DA 3 ANP C 1 1400 1400 ANP ANP . 
EA 3 ANP C 1 2400 2400 ANP ANP . 
FA 3 ANP C 1 3400 3400 ANP ANP . 
GA 2 MG D 1 701 701 MG MG . 
HA 2 MG D 1 1701 1701 MG MG . 
IA 2 MG D 1 2701 2701 MG MG . 
JA 2 MG D 1 3701 3701 MG MG . 
KA 3 ANP D 1 400 400 ANP ANP . 
LA 3 ANP D 1 1400 1400 ANP ANP . 
MA 3 ANP D 1 2400 2400 ANP ANP . 
NA 3 ANP D 1 3400 3400 ANP ANP . 
OA 2 MG E 1 701 701 MG MG . 
PA 2 MG E 1 1701 1701 MG MG . 
QA 2 MG E 1 2701 2701 MG MG . 
RA 2 MG E 1 3701 3701 MG MG . 
SA 3 ANP E 1 400 400 ANP ANP . 
TA 3 ANP E 1 1400 1400 ANP ANP . 
UA 3 ANP E 1 2400 2400 ANP ANP . 
VA 3 ANP E 1 3400 3400 ANP ANP . 
WA 2 MG F 1 701 701 MG MG . 
XA 2 MG F 1 1701 1701 MG MG . 
YA 2 MG F 1 2701 2701 MG MG . 
ZA 2 MG F 1 3701 3701 MG MG . 
AB 3 ANP F 1 400 400 ANP ANP . 
BB 3 ANP F 1 1400 1400 ANP ANP . 
CB 3 ANP F 1 2400 2400 ANP ANP . 
DB 3 ANP F 1 3400 3400 ANP ANP . 
EB 2 MG G 1 701 701 MG MG . 
FB 2 MG G 1 1701 1701 MG MG . 
GB 2 MG G 1 2701 2701 MG MG . 
HB 2 MG G 1 3701 3701 MG MG . 
IB 3 ANP G 1 400 400 ANP ANP . 
JB 3 ANP G 1 1400 1400 ANP ANP . 
KB 3 ANP G 1 2400 2400 ANP ANP . 
LB 3 ANP G 1 3400 3400 ANP ANP . 
MB 2 MG H 1 701 701 MG MG . 
NB 2 MG H 1 1701 1701 MG MG . 
OB 2 MG H 1 2701 2701 MG MG . 
PB 2 MG H 1 3701 3701 MG MG . 
QB 3 ANP H 1 400 400 ANP ANP . 
RB 3 ANP H 1 1400 1400 ANP ANP . 
SB 3 ANP H 1 2400 2400 ANP ANP . 
TB 3 ANP H 1 3400 3400 ANP ANP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . VA 3 62.085 -32.455 152.628 1 164.7 ? PG ANP 3400 E 1 
HETATM 2 O O1G ANP . . . VA 3 61.694 -30.997 152.675 1 166.25 ? O1G ANP 3400 E 1 
HETATM 3 O O2G ANP . . . VA 3 61.879 -33.14 153.957 1 164.14 ? O2G ANP 3400 E 1 
HETATM 4 O O3G ANP . . . VA 3 63.452 -32.69 151.982 1 165.22 ? O3G ANP 3400 E 1 
HETATM 5 P PB ANP . . . VA 3 59.181 -33.029 152.086 1 164.43 ? PB ANP 3400 E 1 
HETATM 6 O O1B ANP . . . VA 3 59.092 -33.934 153.272 1 165.31 ? O1B ANP 3400 E 1 
HETATM 7 O O2B ANP . . . VA 3 58.799 -31.578 152.229 1 163.46 ? O2B ANP 3400 E 1 
HETATM 8 N N3B ANP . . . VA 3 60.843 -33.114 151.586 1 164.28 ? N3B ANP 3400 E 1 
HETATM 9 P PA ANP . . . VA 3 58.126 -33.205 149.538 1 170.62 ? PA ANP 3400 E 1 
HETATM 10 O O1A ANP . . . VA 3 56.827 -32.488 149.427 1 172.09 ? O1A ANP 3400 E 1 
HETATM 11 O O2A ANP . . . VA 3 59.389 -32.52 149.074 1 168.96 ? O2A ANP 3400 E 1 
HETATM 12 O O3A ANP . . . VA 3 58.192 -33.732 151.048 1 167.31 ? O3A ANP 3400 E 1 
HETATM 13 O O5' ANP . . . VA 3 57.926 -34.58 148.736 1 173.6 ? O5' ANP 3400 E 1 
HETATM 14 C C5' ANP . . . VA 3 57.322 -34.603 147.445 1 177.32 ? C5' ANP 3400 E 1 
HETATM 15 C C4' ANP . . . VA 3 58.407 -35.026 146.485 1 180.96 ? C4' ANP 3400 E 1 
HETATM 16 O O4' ANP . . . VA 3 57.985 -35.294 145.153 1 181.92 ? O4' ANP 3400 E 1 
HETATM 17 C C3' ANP . . . VA 3 59.044 -36.332 146.893 1 183.9 ? C3' ANP 3400 E 1 
HETATM 18 O O3' ANP . . . VA 3 58.034 -37.346 147.047 1 184.71 ? O3' ANP 3400 E 1 
HETATM 19 C C2' ANP . . . VA 3 59.873 -36.604 145.663 1 185.39 ? C2' ANP 3400 E 1 
HETATM 20 O O2' ANP . . . VA 3 59.977 -38.021 145.491 1 186.99 ? O2' ANP 3400 E 1 
HETATM 21 C C1' ANP . . . VA 3 59.122 -35.886 144.529 1 185.58 ? C1' ANP 3400 E 1 
HETATM 22 N N9 ANP . . . VA 3 59.955 -34.797 143.931 1 186.22 ? N9 ANP 3400 E 1 
HETATM 23 C C8 ANP . . . VA 3 60.91 -34.096 144.573 1 187.3 ? C8 ANP 3400 E 1 
HETATM 24 N N7 ANP . . . VA 3 61.485 -33.17 143.758 1 187.92 ? N7 ANP 3400 E 1 
HETATM 25 C C5 ANP . . . VA 3 60.91 -33.251 142.538 1 186.85 ? C5 ANP 3400 E 1 
HETATM 26 C C6 ANP . . . VA 3 61.05 -32.56 141.202 1 186.67 ? C6 ANP 3400 E 1 
HETATM 27 N N6 ANP . . . VA 3 61.938 -31.56 140.947 1 187.45 ? N6 ANP 3400 E 1 
HETATM 28 N N1 ANP . . . VA 3 60.248 -32.953 140.198 1 186.48 ? N1 ANP 3400 E 1 
HETATM 29 C C2 ANP . . . VA 3 59.357 -33.942 140.399 1 187.29 ? C2 ANP 3400 E 1 
HETATM 30 N N3 ANP . . . VA 3 59.178 -34.606 141.573 1 187.22 ? N3 ANP 3400 E 1 
HETATM 31 C C4 ANP . . . VA 3 59.905 -34.325 142.674 1 186.35 ? C4 ANP 3400 E 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    80 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          21 
_model_server_stats.element_count           31 
#