data_3CMW
#
_model_server_result.job_id            kZbJYO5uw9BQunTANdNRjQ 
_model_server_result.datetime_utc      '2024-11-15 10:45:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3cmw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"HA","auth_seq_id":4502}' 
#
_entry.id    3CMW 
#
_exptl.entry_id    3CMW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3CMW 
_cell.length_a            159 
_cell.length_b            300.5 
_cell.length_c            80.1 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CMW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 1 1 
B,D,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 O N N 
? 5 P N N 
? 5 Q N N 
? 5 R N N 
? 5 S N N 
? 5 DA N N 
? 5 EA N N 
? 5 FA N N 
? 5 GA N N 
? 5 HA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C OG1 THR 48 A THR 73 1_555 E MG MG . A MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc2 E MG MG . A MG 500 1_555 O O1B ADP . A ADP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc3 C OG1 THR 397 A THR 1073 1_555 G MG MG . A MG 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc4 G MG MG . A MG 1500 1_555 P O1B ADP . A ADP 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc5 C OG1 THR 746 A THR 2073 1_555 I MG MG . A MG 2500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc6 I MG MG . A MG 2500 1_555 Q O1B ADP . A ADP 2502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc7 C OG1 THR 1096 A THR 3073 1_555 K MG MG . A MG 3500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc8 K MG MG . A MG 3500 1_555 R O1B ADP . A ADP 3502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc9 C OG1 THR 1445 A THR 4073 1_555 M MG MG . A MG 4500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc10 M MG MG . A MG 4500 1_555 S O1B ADP . A ADP 4502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc11 D OG1 THR 48 C THR 73 1_555 T MG MG . C MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc12 T MG MG . C MG 500 1_555 DA O1B ADP . C ADP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc13 D OG1 THR 397 C THR 1073 1_555 V MG MG . C MG 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc14 V MG MG . C MG 1500 1_555 EA O1B ADP . C ADP 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc15 D OG1 THR 746 C THR 2073 1_555 X MG MG . C MG 2500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? 
metalc ? metalc16 X MG MG . C MG 2500 1_555 FA O1B ADP . C ADP 2502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc17 D OG1 THR 1096 C THR 3073 1_555 Z MG MG . C MG 3500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
metalc ? metalc18 Z MG MG . C MG 3500 1_555 GA O1B ADP . C ADP 3502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc19 D OG1 THR 1445 C THR 4073 1_555 BA MG MG . C MG 4500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc20 BA MG MG . C MG 4500 1_555 HA O1B ADP . C ADP 4502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     3CMW 
_atom_sites.fract_transf_matrix[1][1]    0.006289 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003328 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012484 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MG A 1 500 500 MG MG . 
F 4 ALF A 1 501 501 ALF ALF . 
G 3 MG A 1 1500 1500 MG MG . 
H 4 ALF A 1 1501 1501 ALF ALF . 
I 3 MG A 1 2500 2500 MG MG . 
J 4 ALF A 1 2501 2501 ALF ALF . 
K 3 MG A 1 3500 3500 MG MG . 
L 4 ALF A 1 3501 3501 ALF ALF . 
M 3 MG A 1 4500 4500 MG MG . 
N 4 ALF A 1 4501 4501 ALF ALF . 
O 5 ADP A 1 502 502 ADP ADP . 
P 5 ADP A 1 1502 1502 ADP ADP . 
Q 5 ADP A 1 2502 2502 ADP ADP . 
R 5 ADP A 1 3502 3502 ADP ADP . 
S 5 ADP A 1 4502 4502 ADP ADP . 
T 3 MG C 1 500 500 MG MG . 
U 4 ALF C 1 501 501 ALF ALF . 
V 3 MG C 1 1500 1500 MG MG . 
W 4 ALF C 1 1501 1501 ALF ALF . 
X 3 MG C 1 2500 2500 MG MG . 
Y 4 ALF C 1 2501 2501 ALF ALF . 
Z 3 MG C 1 3500 3500 MG MG . 
AA 4 ALF C 1 3501 3501 ALF ALF . 
BA 3 MG C 1 4500 4500 MG MG . 
CA 4 ALF C 1 4501 4501 ALF ALF . 
DA 5 ADP C 1 502 502 ADP ADP . 
EA 5 ADP C 1 1502 1502 ADP ADP . 
FA 5 ADP C 1 2502 2502 ADP ADP . 
GA 5 ADP C 1 3502 3502 ADP ADP . 
HA 5 ADP C 1 4502 4502 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . HA 5 49.384 51.2 45.728 1 58.02 ? PB ADP 4502 C 1 
HETATM 2 O O1B ADP . . . HA 5 48.445 52.33 46.109 1 56.94 ? O1B ADP 4502 C 1 
HETATM 3 O O2B ADP . . . HA 5 50.069 51.295 44.376 1 54.91 ? O2B ADP 4502 C 1 
HETATM 4 O O3B ADP . . . HA 5 48.745 49.852 46.099 1 61.93 ? O3B ADP 4502 C 1 
HETATM 5 P PA ADP . . . HA 5 50.882 52.377 47.863 1 58.76 ? PA ADP 4502 C 1 
HETATM 6 O O1A ADP . . . HA 5 51.151 53.768 47.325 1 60.08 ? O1A ADP 4502 C 1 
HETATM 7 O O2A ADP . . . HA 5 49.716 52.206 48.812 1 56.5 ? O2A ADP 4502 C 1 
HETATM 8 O O3A ADP . . . HA 5 50.714 51.344 46.622 1 58.94 ? O3A ADP 4502 C 1 
HETATM 9 O O5' ADP . . . HA 5 52.252 51.82 48.521 1 55.79 ? O5' ADP 4502 C 1 
HETATM 10 C C5' ADP . . . HA 5 53.444 51.683 47.742 1 55.04 ? C5' ADP 4502 C 1 
HETATM 11 C C4' ADP . . . HA 5 54.559 51.163 48.649 1 59.46 ? C4' ADP 4502 C 1 
HETATM 12 O O4' ADP . . . HA 5 54.586 51.935 49.87 1 61.56 ? O4' ADP 4502 C 1 
HETATM 13 C C3' ADP . . . HA 5 54.398 49.706 49.074 1 59.97 ? C3' ADP 4502 C 1 
HETATM 14 O O3' ADP . . . HA 5 55.672 49.056 49.073 1 62.74 ? O3' ADP 4502 C 1 
HETATM 15 C C2' ADP . . . HA 5 53.937 49.798 50.507 1 59.75 ? C2' ADP 4502 C 1 
HETATM 16 O O2' ADP . . . HA 5 54.453 48.735 51.29 1 63.94 ? O2' ADP 4502 C 1 
HETATM 17 C C1' ADP . . . HA 5 54.512 51.103 51.019 1 56.81 ? C1' ADP 4502 C 1 
HETATM 18 N N9 ADP . . . HA 5 53.542 51.663 51.968 1 56.38 ? N9 ADP 4502 C 1 
HETATM 19 C C8 ADP . . . HA 5 52.3 52.113 51.672 1 55.96 ? C8 ADP 4502 C 1 
HETATM 20 N N7 ADP . . . HA 5 51.653 52.548 52.788 1 55.84 ? N7 ADP 4502 C 1 
HETATM 21 C C5 ADP . . . HA 5 52.497 52.362 53.811 1 55.48 ? C5 ADP 4502 C 1 
HETATM 22 C C6 ADP . . . HA 5 52.434 52.606 55.257 1 55.36 ? C6 ADP 4502 C 1 
HETATM 23 N N6 ADP . . . HA 5 51.297 53.142 55.766 1 54.9 ? N6 ADP 4502 C 1 
HETATM 24 N N1 ADP . . . HA 5 53.537 52.271 55.992 1 55.91 ? N1 ADP 4502 C 1 
HETATM 25 C C2 ADP . . . HA 5 54.65 51.727 55.439 1 54.92 ? C2 ADP 4502 C 1 
HETATM 26 N N3 ADP . . . HA 5 54.773 51.476 54.121 1 54.95 ? N3 ADP 4502 C 1 
HETATM 27 C C4 ADP . . . HA 5 53.746 51.774 53.277 1 56.26 ? C4 ADP 4502 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#