data_3CMX # _model_server_result.job_id uj6g9pUziCrfU4kFBY6NaA _model_server_result.datetime_utc '2025-02-13 12:44:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cmx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":3500}' # _entry.id 3CMX # _exptl.entry_id 3CMX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CMX _cell.length_a 159 _cell.length_b 300.5 _cell.length_c 80.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CMX _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 1 1 C,D,F,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N ? 4 K N N ? 4 M N N ? 4 O N N ? 4 V N N ? 4 X N N ? 4 Z N N ? 4 BA N N ? 4 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E OG1 THR 48 A THR 73 1_555 G MG MG . A MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc2 G MG MG . A MG 500 1_555 Q O1B ADP . A ADP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc3 E OG1 THR 397 A THR 1073 1_555 I MG MG . A MG 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc4 I MG MG . A MG 1500 1_555 R O1B ADP . A ADP 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc5 E OG1 THR 746 A THR 2073 1_555 K MG MG . A MG 2500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc6 K MG MG . A MG 2500 1_555 S O1B ADP . A ADP 2502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc7 E OG1 THR 1096 A THR 3073 1_555 M MG MG . A MG 3500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc8 M MG MG . A MG 3500 1_555 T O1B ADP . A ADP 3502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc9 E OG1 THR 1445 A THR 4073 1_555 O MG MG . A MG 4500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.846 ? metalc ? metalc10 F OG1 THR 48 D THR 73 1_555 V MG MG . D MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc11 V MG MG . D MG 500 1_555 FA O1B ADP . D ADP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc12 F OG1 THR 397 D THR 1073 1_555 X MG MG . D MG 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc13 X MG MG . D MG 1500 1_555 GA O1B ADP . D ADP 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc14 F OG1 THR 746 D THR 2073 1_555 Z MG MG . D MG 2500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc15 Z MG MG . D MG 2500 1_555 HA O1B ADP . D ADP 2502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc16 F OG1 THR 1096 D THR 3073 1_555 BA MG MG . D MG 3500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc17 BA MG MG . D MG 3500 1_555 IA O1B ADP . D ADP 3502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc18 F OG1 THR 1445 D THR 4073 1_555 DA MG MG . D MG 4500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc19 DA MG MG . D MG 4500 1_555 JA O1B ADP . D ADP 4502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? hydrog 'DT-DA PAIR' hydrog1 A N3 DT 5 B DT 1003 1_555 B N1 DA 11 C DA 2013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N3 DT 6 B DT 1004 1_555 B N1 DA 10 C DA 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O4 DT 6 B DT 1004 1_555 B N6 DA 10 C DA 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog4 A N3 DT 7 B DT 1005 1_555 B N1 DA 9 C DA 2011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N3 DT 9 B DT 1007 1_555 B N1 DA 7 C DA 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O4 DT 9 B DT 1007 1_555 B N6 DA 7 C DA 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog7 A N3 DT 10 B DT 1008 1_555 B N1 DA 6 C DA 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 DT 12 B DT 1010 1_555 B N1 DA 4 C DA 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O4 DT 12 B DT 1010 1_555 B N6 DA 4 C DA 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog10 A N3 DT 13 B DT 1011 1_555 B N1 DA 3 C DA 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N3 DT 6 E DT 1004 1_555 D N1 DA 9 F DA 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C O4 DT 6 E DT 1004 1_555 D N6 DA 9 F DA 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog13 C N3 DT 7 E DT 1005 1_555 D N1 DA 8 F DA 2011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N3 DT 9 E DT 1007 1_555 D N1 DA 6 F DA 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C O4 DT 9 E DT 1007 1_555 D N6 DA 6 F DA 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog16 C N3 DT 10 E DT 1008 1_555 D N1 DA 5 F DA 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N3 DT 12 E DT 1010 1_555 D N1 DA 3 F DA 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C O4 DT 12 E DT 1010 1_555 D N6 DA 3 F DA 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog19 C N3 DT 13 E DT 1011 1_555 D N1 DA 2 F DA 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3CMX _atom_sites.fract_transf_matrix[1][1] 0.006289 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003328 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012484 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 MG A 1 500 500 MG MG . H 5 ALF A 1 501 501 ALF ALF . I 4 MG A 1 1500 1500 MG MG . J 5 ALF A 1 1501 1501 ALF ALF . K 4 MG A 1 2500 2500 MG MG . L 5 ALF A 1 2501 2501 ALF ALF . M 4 MG A 1 3500 3500 MG MG . N 5 ALF A 1 3501 3501 ALF ALF . O 4 MG A 1 4500 4500 MG MG . P 5 ALF A 1 4501 4501 ALF ALF . Q 6 ADP A 1 502 502 ADP ADP . R 6 ADP A 1 1502 1502 ADP ADP . S 6 ADP A 1 2502 2502 ADP ADP . T 6 ADP A 1 3502 3502 ADP ADP . U 6 ADP A 1 4502 4502 ADP ADP . V 4 MG D 1 500 500 MG MG . W 5 ALF D 1 501 501 ALF ALF . X 4 MG D 1 1500 1500 MG MG . Y 5 ALF D 1 1501 1501 ALF ALF . Z 4 MG D 1 2500 2500 MG MG . AA 5 ALF D 1 2501 2501 ALF ALF . BA 4 MG D 1 3500 3500 MG MG . CA 5 ALF D 1 3501 3501 ALF ALF . DA 4 MG D 1 4500 4500 MG MG . EA 5 ALF D 1 4501 4501 ALF ALF . FA 6 ADP D 1 502 502 ADP ADP . GA 6 ADP D 1 1502 1502 ADP ADP . HA 6 ADP D 1 2502 2502 ADP ADP . IA 6 ADP D 1 3502 3502 ADP ADP . JA 6 ADP D 1 4502 4502 ADP ADP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 4 _atom_site.Cartn_x 25.36 _atom_site.Cartn_y 12.522 _atom_site.Cartn_z 19.349 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 3500 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #