data_3CMY
#
_model_server_result.job_id            QGnoI4_FDL4xKWa4qYzApA 
_model_server_result.datetime_utc      '2024-11-22 06:37:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3cmy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":61}' 
#
_entry.id    3CMY 
#
_exptl.entry_id    3CMY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3CMY 
_cell.length_a            43.325 
_cell.length_b            62.243 
_cell.length_c            92.556 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CMY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog WATSON-CRICK hydrog1 B N3 DC 2 B DC 2 1_555 C N1 DG 14 C DG 14 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 B N4 DC 2 B DC 2 1_555 C O6 DG 14 C DG 14 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 B O2 DC 2 B DC 2 1_555 C N2 DG 14 C DG 14 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 B N1 DA 3 B DA 3 1_555 C N3 DT 13 C DT 13 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 B N6 DA 3 B DA 3 1_555 C O4 DT 13 C DT 13 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 B N3 DT 4 B DT 4 1_555 C N1 DA 12 C DA 12 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 B O4 DT 4 B DT 4 1_555 C N6 DA 12 C DA 12 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 B N1 DA 5 B DA 5 1_555 C N3 DT 11 C DT 11 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 B N6 DA 5 B DA 5 1_555 C O4 DT 11 C DT 11 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 B N1 DA 6 B DA 6 1_555 C N3 DT 10 C DT 10 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 B N6 DA 6 B DA 6 1_555 C O4 DT 10 C DT 10 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 B N3 DT 7 B DT 7 1_555 C N1 DA 9 C DA 9 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 B O4 DT 7 B DT 7 1_555 C N6 DA 9 C DA 9 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 B N3 DC 8 B DC 8 1_555 C N1 DG 8 C DG 8 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 B N4 DC 8 B DC 8 1_555 C O6 DG 8 C DG 8 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 B O2 DC 8 B DC 8 1_555 C N2 DG 8 C DG 8 1_555 ? A ? ? A ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 219 n n 
C1 C2 EDO sing 220 n n 
C1 H11 EDO sing 221 n n 
C1 H12 EDO sing 222 n n 
O1 HO1 EDO sing 223 n n 
C2 O2 EDO sing 224 n n 
C2 H21 EDO sing 225 n n 
C2 H22 EDO sing 226 n n 
O2 HO2 EDO sing 227 n n 
#
_atom_sites.entry_id                     3CMY 
_atom_sites.fract_transf_matrix[1][1]    0.023081 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016066 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010804 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 EDO A 1 61 1 EDO EDO . 
E 5 HOH A 1 62 2 HOH HOH . 
E 5 HOH A 2 63 3 HOH HOH . 
E 5 HOH A 3 64 20 HOH HOH . 
E 5 HOH A 4 65 27 HOH HOH . 
E 5 HOH A 5 66 29 HOH HOH . 
E 5 HOH A 6 67 31 HOH HOH . 
E 5 HOH A 7 68 32 HOH HOH . 
E 5 HOH A 8 69 33 HOH HOH . 
E 5 HOH A 9 70 34 HOH HOH . 
E 5 HOH A 10 71 35 HOH HOH . 
E 5 HOH A 11 72 36 HOH HOH . 
E 5 HOH A 12 73 37 HOH HOH . 
E 5 HOH A 13 74 38 HOH HOH . 
E 5 HOH A 14 75 39 HOH HOH . 
E 5 HOH A 15 76 40 HOH HOH . 
E 5 HOH A 16 77 41 HOH HOH . 
E 5 HOH A 17 78 42 HOH HOH . 
E 5 HOH A 18 79 43 HOH HOH . 
E 5 HOH A 19 80 44 HOH HOH . 
E 5 HOH A 20 81 45 HOH HOH . 
E 5 HOH A 21 82 47 HOH HOH . 
E 5 HOH A 22 83 48 HOH HOH . 
E 5 HOH A 23 84 49 HOH HOH . 
E 5 HOH A 24 85 50 HOH HOH . 
E 5 HOH A 25 86 51 HOH HOH . 
E 5 HOH A 26 87 52 HOH HOH . 
E 5 HOH A 27 88 53 HOH HOH . 
E 5 HOH A 28 89 54 HOH HOH . 
E 5 HOH A 29 90 56 HOH HOH . 
E 5 HOH A 30 91 57 HOH HOH . 
E 5 HOH A 31 93 59 HOH HOH . 
E 5 HOH A 32 94 60 HOH HOH . 
E 5 HOH A 33 95 61 HOH HOH . 
E 5 HOH A 34 96 62 HOH HOH . 
E 5 HOH A 35 97 64 HOH HOH . 
E 5 HOH A 36 98 65 HOH HOH . 
E 5 HOH A 37 99 66 HOH HOH . 
E 5 HOH A 38 100 68 HOH HOH . 
E 5 HOH A 39 101 69 HOH HOH . 
E 5 HOH A 40 102 70 HOH HOH . 
E 5 HOH A 41 103 72 HOH HOH . 
E 5 HOH A 42 104 73 HOH HOH . 
E 5 HOH A 43 105 74 HOH HOH . 
E 5 HOH A 44 106 75 HOH HOH . 
E 5 HOH A 45 107 77 HOH HOH . 
E 5 HOH A 46 108 79 HOH HOH . 
E 5 HOH A 47 109 80 HOH HOH . 
E 5 HOH A 48 110 81 HOH HOH . 
E 5 HOH A 49 111 82 HOH HOH . 
E 5 HOH A 50 112 83 HOH HOH . 
E 5 HOH A 51 113 84 HOH HOH . 
F 5 HOH B 1 15 1 HOH HOH . 
F 5 HOH B 2 16 4 HOH HOH . 
F 5 HOH B 3 17 6 HOH HOH . 
F 5 HOH B 4 18 7 HOH HOH . 
F 5 HOH B 5 19 9 HOH HOH . 
F 5 HOH B 6 20 12 HOH HOH . 
F 5 HOH B 7 21 13 HOH HOH . 
F 5 HOH B 8 22 14 HOH HOH . 
F 5 HOH B 9 23 15 HOH HOH . 
F 5 HOH B 10 24 21 HOH HOH . 
F 5 HOH B 11 25 22 HOH HOH . 
F 5 HOH B 12 26 24 HOH HOH . 
F 5 HOH B 13 27 25 HOH HOH . 
F 5 HOH B 14 28 30 HOH HOH . 
F 5 HOH B 15 29 63 HOH HOH . 
F 5 HOH B 16 30 67 HOH HOH . 
F 5 HOH B 17 31 76 HOH HOH . 
F 5 HOH B 18 32 78 HOH HOH . 
F 5 HOH B 19 92 58 HOH HOH . 
G 5 HOH C 1 15 5 HOH HOH . 
G 5 HOH C 2 16 8 HOH HOH . 
G 5 HOH C 3 17 10 HOH HOH . 
G 5 HOH C 4 18 11 HOH HOH . 
G 5 HOH C 5 19 16 HOH HOH . 
G 5 HOH C 6 20 17 HOH HOH . 
G 5 HOH C 7 21 18 HOH HOH . 
G 5 HOH C 8 22 19 HOH HOH . 
G 5 HOH C 9 23 23 HOH HOH . 
G 5 HOH C 10 24 26 HOH HOH . 
G 5 HOH C 11 25 28 HOH HOH . 
G 5 HOH C 12 26 46 HOH HOH . 
G 5 HOH C 13 27 55 HOH HOH . 
G 5 HOH C 14 28 71 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . A . D 4 10.739 8.206 -10.496 0.5 85.25 ? C1 EDO 61 A 1 
HETATM 2 O O1 EDO . A . D 4 10.821 6.814 -10.834 0.5 84.1 ? O1 EDO 61 A 1 
HETATM 3 C C2 EDO . A . D 4 12.081 8.888 -10.742 0.5 85.35 ? C2 EDO 61 A 1 
HETATM 4 O O2 EDO . A . D 4 12.872 8.872 -9.542 0.5 85.76 ? O2 EDO 61 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           502 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#