data_3CN6 # _model_server_result.job_id LGBH7nEYW2ovt25mDvItAQ _model_server_result.datetime_utc '2024-10-20 05:43:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cn6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":282}' # _entry.id 3CN6 # _exptl.entry_id 3CN6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CN6 _cell.length_a 89.558 _cell.length_b 89.558 _cell.length_c 189.271 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CN6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1,2,3,4 B,D,F 2 1,5,6,7 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_545 -y,x-1,z 0 -1 0 1 0 0 0 0 1 0 -89.558 0 3 'crystal symmetry operation' 4_655 y+1,-x,z 0 1 0 -1 0 0 0 0 1 89.558 0 0 4 'crystal symmetry operation' 2_645 -x+1,-y-1,z -1 0 0 0 -1 0 0 0 1 89.558 -89.558 0 5 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 6 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 7 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 51 A ASP 28 1_555 C CD CD . A CD 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc2 A OD2 ASP 51 A ASP 28 1_555 C CD CD . A CD 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc3 A OE2 GLU 54 A GLU 31 1_555 C CD CD . A CD 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc4 C CD CD . A CD 282 1_555 E O HOH . A HOH 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc5 C CD CD . A CD 282 1_555 E O HOH . A HOH 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc6 B OD1 ASP 51 B ASP 28 1_555 D CD CD . B CD 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc7 B OD2 ASP 51 B ASP 28 1_555 D CD CD . B CD 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc8 B OE2 GLU 54 B GLU 31 1_555 D CD CD . B CD 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc9 D CD CD . B CD 282 1_555 F O HOH . B HOH 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc10 D CD CD . B CD 282 1_555 F O HOH . B HOH 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3CN6 _atom_sites.fract_transf_matrix[1][1] 0.011166 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011166 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005283 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD A 1 282 2 CD CD . D 2 CD B 1 282 1 CD CD . E 3 HOH A 1 283 11 HOH HOH . E 3 HOH A 2 284 21 HOH HOH . E 3 HOH A 3 285 22 HOH HOH . E 3 HOH A 4 286 29 HOH HOH . E 3 HOH A 5 287 30 HOH HOH . E 3 HOH A 6 288 31 HOH HOH . E 3 HOH A 7 289 32 HOH HOH . E 3 HOH A 8 290 33 HOH HOH . E 3 HOH A 9 291 34 HOH HOH . E 3 HOH A 10 292 35 HOH HOH . E 3 HOH A 11 293 36 HOH HOH . E 3 HOH A 12 294 37 HOH HOH . E 3 HOH A 13 295 38 HOH HOH . E 3 HOH A 14 296 39 HOH HOH . E 3 HOH A 15 297 40 HOH HOH . E 3 HOH A 16 298 41 HOH HOH . E 3 HOH A 17 299 42 HOH HOH . E 3 HOH A 18 300 43 HOH HOH . E 3 HOH A 19 301 44 HOH HOH . E 3 HOH A 20 302 45 HOH HOH . F 3 HOH B 1 283 1 HOH HOH . F 3 HOH B 2 284 2 HOH HOH . F 3 HOH B 3 285 3 HOH HOH . F 3 HOH B 4 286 4 HOH HOH . F 3 HOH B 5 287 5 HOH HOH . F 3 HOH B 6 288 6 HOH HOH . F 3 HOH B 7 289 7 HOH HOH . F 3 HOH B 8 290 8 HOH HOH . F 3 HOH B 9 291 9 HOH HOH . F 3 HOH B 10 292 10 HOH HOH . F 3 HOH B 11 293 12 HOH HOH . F 3 HOH B 12 294 13 HOH HOH . F 3 HOH B 13 295 14 HOH HOH . F 3 HOH B 14 296 15 HOH HOH . F 3 HOH B 15 297 16 HOH HOH . F 3 HOH B 16 298 17 HOH HOH . F 3 HOH B 17 299 18 HOH HOH . F 3 HOH B 18 300 19 HOH HOH . F 3 HOH B 19 301 20 HOH HOH . F 3 HOH B 20 302 23 HOH HOH . F 3 HOH B 21 303 24 HOH HOH . F 3 HOH B 22 304 25 HOH HOH . F 3 HOH B 23 305 26 HOH HOH . F 3 HOH B 24 306 27 HOH HOH . F 3 HOH B 25 307 28 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 19.535 _atom_site.Cartn_y -20.546 _atom_site.Cartn_z -60.563 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 282 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #