data_3CND # _model_server_result.job_id qvaoUhJ5dTLEqCUU2ioAQg _model_server_result.datetime_utc '2025-01-25 07:29:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cnd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 3CND # _exptl.entry_id 3CND _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CND _cell.length_a 102.579 _cell.length_b 215.853 _cell.length_c 118.904 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CND _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 221 B CYS 221 1_555 A SG CYS 238 B CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 B SG CYS 221 A CYS 221 1_555 B SG CYS 238 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 3CND _atom_sites.fract_transf_matrix[1][1] 0.009749 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004633 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00841 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD B 1 802 802 FAD FAD . D 3 SP5 B 1 803 2 SP5 SP5 . E 2 FAD A 1 801 801 FAD FAD . F 4 HOH B 1 804 2 HOH TIP . F 4 HOH B 2 805 3 HOH TIP . F 4 HOH B 3 806 10 HOH TIP . F 4 HOH B 4 807 15 HOH TIP . F 4 HOH B 5 808 16 HOH TIP . F 4 HOH B 6 809 17 HOH TIP . F 4 HOH B 7 810 21 HOH TIP . F 4 HOH B 8 811 23 HOH TIP . F 4 HOH B 9 812 24 HOH TIP . F 4 HOH B 10 813 25 HOH TIP . F 4 HOH B 11 814 26 HOH TIP . F 4 HOH B 12 815 30 HOH TIP . F 4 HOH B 13 816 31 HOH TIP . F 4 HOH B 14 817 34 HOH TIP . F 4 HOH B 15 818 36 HOH TIP . F 4 HOH B 16 819 37 HOH TIP . F 4 HOH B 17 820 38 HOH TIP . F 4 HOH B 18 821 39 HOH TIP . F 4 HOH B 19 822 42 HOH TIP . F 4 HOH B 20 823 43 HOH TIP . F 4 HOH B 21 824 45 HOH TIP . F 4 HOH B 22 825 54 HOH TIP . F 4 HOH B 23 826 57 HOH TIP . F 4 HOH B 24 827 58 HOH TIP . F 4 HOH B 25 828 59 HOH TIP . G 4 HOH A 1 802 1 HOH TIP . G 4 HOH A 2 803 4 HOH TIP . G 4 HOH A 3 804 5 HOH TIP . G 4 HOH A 4 805 6 HOH TIP . G 4 HOH A 5 806 7 HOH TIP . G 4 HOH A 6 807 8 HOH TIP . G 4 HOH A 7 808 9 HOH TIP . G 4 HOH A 8 809 11 HOH TIP . G 4 HOH A 9 810 12 HOH TIP . G 4 HOH A 10 811 13 HOH TIP . G 4 HOH A 11 812 14 HOH TIP . G 4 HOH A 12 813 18 HOH TIP . G 4 HOH A 13 814 19 HOH TIP . G 4 HOH A 14 815 20 HOH TIP . G 4 HOH A 15 816 22 HOH TIP . G 4 HOH A 16 817 27 HOH TIP . G 4 HOH A 17 818 28 HOH TIP . G 4 HOH A 18 819 29 HOH TIP . G 4 HOH A 19 820 32 HOH TIP . G 4 HOH A 20 821 33 HOH TIP . G 4 HOH A 21 822 35 HOH TIP . G 4 HOH A 22 823 40 HOH TIP . G 4 HOH A 23 824 41 HOH TIP . G 4 HOH A 24 825 44 HOH TIP . G 4 HOH A 25 826 46 HOH TIP . G 4 HOH A 26 827 47 HOH TIP . G 4 HOH A 27 828 48 HOH TIP . G 4 HOH A 28 829 49 HOH TIP . G 4 HOH A 29 830 50 HOH TIP . G 4 HOH A 30 831 51 HOH TIP . G 4 HOH A 31 832 52 HOH TIP . G 4 HOH A 32 833 53 HOH TIP . G 4 HOH A 33 834 55 HOH TIP . G 4 HOH A 34 835 56 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 2 72.814 -13.209 64.688 1 40.61 ? PA FAD 801 A 1 HETATM 2 O O1A FAD . . . E 2 72.861 -13.728 63.329 1 41.66 ? O1A FAD 801 A 1 HETATM 3 O O2A FAD . . . E 2 71.939 -13.452 65.812 1 43.58 ? O2A FAD 801 A 1 HETATM 4 O O5B FAD . . . E 2 74.314 -12.703 65.07 1 42.64 ? O5B FAD 801 A 1 HETATM 5 C C5B FAD . . . E 2 74.643 -12.125 66.338 1 41.74 ? C5B FAD 801 A 1 HETATM 6 C C4B FAD . . . E 2 74.896 -10.592 66.205 1 43.18 ? C4B FAD 801 A 1 HETATM 7 O O4B FAD . . . E 2 76.263 -10.301 65.936 1 42.6 ? O4B FAD 801 A 1 HETATM 8 C C3B FAD . . . E 2 74.123 -9.821 65.116 1 41.82 ? C3B FAD 801 A 1 HETATM 9 O O3B FAD . . . E 2 73.031 -9.137 65.682 1 44.66 ? O3B FAD 801 A 1 HETATM 10 C C2B FAD . . . E 2 75.179 -8.891 64.51 1 41.69 ? C2B FAD 801 A 1 HETATM 11 O O2B FAD . . . E 2 74.736 -7.598 64.147 1 40.46 ? O2B FAD 801 A 1 HETATM 12 C C1B FAD . . . E 2 76.279 -8.917 65.584 1 40.53 ? C1B FAD 801 A 1 HETATM 13 N N9A FAD . . . E 2 77.658 -8.571 65.16 1 39.97 ? N9A FAD 801 A 1 HETATM 14 C C8A FAD . . . E 2 78.321 -9.022 64.045 1 40.15 ? C8A FAD 801 A 1 HETATM 15 N N7A FAD . . . E 2 79.557 -8.536 63.951 1 38.58 ? N7A FAD 801 A 1 HETATM 16 C C5A FAD . . . E 2 79.712 -7.731 65.054 1 39.45 ? C5A FAD 801 A 1 HETATM 17 C C6A FAD . . . E 2 80.806 -6.948 65.512 1 40.17 ? C6A FAD 801 A 1 HETATM 18 N N6A FAD . . . E 2 81.972 -6.865 64.885 1 35.92 ? N6A FAD 801 A 1 HETATM 19 N N1A FAD . . . E 2 80.628 -6.232 66.693 1 41.31 ? N1A FAD 801 A 1 HETATM 20 C C2A FAD . . . E 2 79.427 -6.302 67.371 1 40.25 ? C2A FAD 801 A 1 HETATM 21 N N3A FAD . . . E 2 78.35 -7.034 66.988 1 40.51 ? N3A FAD 801 A 1 HETATM 22 C C4A FAD . . . E 2 78.536 -7.735 65.82 1 40.42 ? C4A FAD 801 A 1 HETATM 23 N N1 FAD . . . E 2 66.169 -20.318 61.546 1 34.42 ? N1 FAD 801 A 1 HETATM 24 C C2 FAD . . . E 2 65.123 -21.069 62.001 1 35.14 ? C2 FAD 801 A 1 HETATM 25 O O2 FAD . . . E 2 65.233 -21.736 63.023 1 37.93 ? O2 FAD 801 A 1 HETATM 26 N N3 FAD . . . E 2 63.921 -21.037 61.27 1 35.09 ? N3 FAD 801 A 1 HETATM 27 C C4 FAD . . . E 2 63.737 -20.28 60.104 1 35.64 ? C4 FAD 801 A 1 HETATM 28 O O4 FAD . . . E 2 62.64 -20.271 59.491 1 34.63 ? O4 FAD 801 A 1 HETATM 29 C C4X FAD . . . E 2 64.826 -19.509 59.666 1 33.16 ? C4X FAD 801 A 1 HETATM 30 N N5 FAD . . . E 2 64.718 -18.706 58.544 1 32.53 ? N5 FAD 801 A 1 HETATM 31 C C5X FAD . . . E 2 65.77 -17.893 58.143 1 31.1 ? C5X FAD 801 A 1 HETATM 32 C C6 FAD . . . E 2 65.624 -17.053 57.03 1 31.09 ? C6 FAD 801 A 1 HETATM 33 C C7 FAD . . . E 2 66.645 -16.183 56.613 1 31.13 ? C7 FAD 801 A 1 HETATM 34 C C7M FAD . . . E 2 66.428 -15.293 55.414 1 28.69 ? C7M FAD 801 A 1 HETATM 35 C C8 FAD . . . E 2 67.876 -16.175 57.371 1 33.42 ? C8 FAD 801 A 1 HETATM 36 C C8M FAD . . . E 2 69.027 -15.253 57.01 1 33.31 ? C8M FAD 801 A 1 HETATM 37 C C9 FAD . . . E 2 68.035 -17.037 58.487 1 29.48 ? C9 FAD 801 A 1 HETATM 38 C C9A FAD . . . E 2 66.997 -17.899 58.891 1 30.62 ? C9A FAD 801 A 1 HETATM 39 N N10 FAD . . . E 2 67.108 -18.766 60.028 1 33.87 ? N10 FAD 801 A 1 HETATM 40 C C10 FAD . . . E 2 66.028 -19.553 60.419 1 32.4 ? C10 FAD 801 A 1 HETATM 41 C C1' FAD . . . E 2 68.362 -18.842 60.852 1 32.45 ? C1' FAD 801 A 1 HETATM 42 C C2' FAD . . . E 2 68.301 -18.048 62.149 1 31.99 ? C2' FAD 801 A 1 HETATM 43 O O2' FAD . . . E 2 67.959 -16.718 61.826 1 32.29 ? O2' FAD 801 A 1 HETATM 44 C C3' FAD . . . E 2 69.676 -18.117 62.799 1 31.56 ? C3' FAD 801 A 1 HETATM 45 O O3' FAD . . . E 2 70.017 -19.469 63.129 1 32.12 ? O3' FAD 801 A 1 HETATM 46 C C4' FAD . . . E 2 69.847 -17.398 64.124 1 33.4 ? C4' FAD 801 A 1 HETATM 47 O O4' FAD . . . E 2 69.048 -16.205 64.152 1 33.2 ? O4' FAD 801 A 1 HETATM 48 C C5' FAD . . . E 2 71.327 -17.058 64.302 1 34.42 ? C5' FAD 801 A 1 HETATM 49 O O5' FAD . . . E 2 71.458 -16.459 65.587 1 37.25 ? O5' FAD 801 A 1 HETATM 50 P P FAD . . . E 2 72.826 -15.935 66.155 1 37.63 ? P FAD 801 A 1 HETATM 51 O O1P FAD . . . E 2 72.468 -15.466 67.505 1 37.78 ? O1P FAD 801 A 1 HETATM 52 O O2P FAD . . . E 2 73.865 -17.008 66.094 1 39.26 ? O2P FAD 801 A 1 HETATM 53 O O3P FAD . . . E 2 73.336 -14.716 65.19 1 37.89 ? O3P FAD 801 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #