data_3CNN # _model_server_result.job_id Xv2DAQodutz-6jGbVyvV3A _model_server_result.datetime_utc '2024-10-28 11:23:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cnn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":263}' # _entry.id 3CNN # _exptl.entry_id 3CNN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CNN _cell.length_a 35.264 _cell.length_b 75.295 _cell.length_c 105.106 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CNN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 116 n n PG O2G GTP sing 117 n n PG O3G GTP sing 118 n n PG O3B GTP sing 119 n n O2G HOG2 GTP sing 120 n n O3G HOG3 GTP sing 121 n n O3B PB GTP sing 122 n n PB O1B GTP doub 123 n n PB O2B GTP sing 124 n n PB O3A GTP sing 125 n n O2B HOB2 GTP sing 126 n n O3A PA GTP sing 127 n n PA O1A GTP doub 128 n n PA O2A GTP sing 129 n n PA O5' GTP sing 130 n n O2A HOA2 GTP sing 131 n n O5' C5' GTP sing 132 n n C5' C4' GTP sing 133 n n C5' H5' GTP sing 134 n n C5' "H5''" GTP sing 135 n n C4' O4' GTP sing 136 n n C4' C3' GTP sing 137 n n C4' H4' GTP sing 138 n n O4' C1' GTP sing 139 n n C3' O3' GTP sing 140 n n C3' C2' GTP sing 141 n n C3' H3' GTP sing 142 n n O3' HO3' GTP sing 143 n n C2' O2' GTP sing 144 n n C2' C1' GTP sing 145 n n C2' H2' GTP sing 146 n n O2' HO2' GTP sing 147 n n C1' N9 GTP sing 148 n n C1' H1' GTP sing 149 n n N9 C8 GTP sing 150 n y N9 C4 GTP sing 151 n y C8 N7 GTP doub 152 n y C8 H8 GTP sing 153 n n N7 C5 GTP sing 154 n y C5 C6 GTP sing 155 n n C5 C4 GTP doub 156 n y C6 O6 GTP doub 157 n n C6 N1 GTP sing 158 n n N1 C2 GTP sing 159 n n N1 HN1 GTP sing 160 n n C2 N2 GTP sing 161 n n C2 N3 GTP doub 162 n n N2 HN21 GTP sing 163 n n N2 HN22 GTP sing 164 n n N3 C4 GTP sing 165 n n # _atom_sites.entry_id 3CNN _atom_sites.fract_transf_matrix[1][1] 0.028358 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013281 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009514 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GTP A 1 263 167 GTP GTP . C 3 HOH A 1 264 1 HOH HOH . C 3 HOH A 2 265 2 HOH HOH . C 3 HOH A 3 266 3 HOH HOH . C 3 HOH A 4 267 4 HOH HOH . C 3 HOH A 5 268 5 HOH HOH . C 3 HOH A 6 269 6 HOH HOH . C 3 HOH A 7 270 7 HOH HOH . C 3 HOH A 8 271 8 HOH HOH . C 3 HOH A 9 272 9 HOH HOH . C 3 HOH A 10 273 10 HOH HOH . C 3 HOH A 11 274 11 HOH HOH . C 3 HOH A 12 275 12 HOH HOH . C 3 HOH A 13 276 13 HOH HOH . C 3 HOH A 14 277 14 HOH HOH . C 3 HOH A 15 278 15 HOH HOH . C 3 HOH A 16 279 16 HOH HOH . C 3 HOH A 17 280 17 HOH HOH . C 3 HOH A 18 281 18 HOH HOH . C 3 HOH A 19 282 19 HOH HOH . C 3 HOH A 20 283 20 HOH HOH . C 3 HOH A 21 284 21 HOH HOH . C 3 HOH A 22 285 22 HOH HOH . C 3 HOH A 23 286 23 HOH HOH . C 3 HOH A 24 287 24 HOH HOH . C 3 HOH A 25 288 25 HOH HOH . C 3 HOH A 26 289 26 HOH HOH . C 3 HOH A 27 290 27 HOH HOH . C 3 HOH A 28 291 28 HOH HOH . C 3 HOH A 29 292 29 HOH HOH . C 3 HOH A 30 293 30 HOH HOH . C 3 HOH A 31 294 31 HOH HOH . C 3 HOH A 32 295 32 HOH HOH . C 3 HOH A 33 296 33 HOH HOH . C 3 HOH A 34 297 34 HOH HOH . C 3 HOH A 35 298 35 HOH HOH . C 3 HOH A 36 299 36 HOH HOH . C 3 HOH A 37 300 37 HOH HOH . C 3 HOH A 38 301 38 HOH HOH . C 3 HOH A 39 302 39 HOH HOH . C 3 HOH A 40 303 40 HOH HOH . C 3 HOH A 41 304 41 HOH HOH . C 3 HOH A 42 305 42 HOH HOH . C 3 HOH A 43 306 43 HOH HOH . C 3 HOH A 44 307 44 HOH HOH . C 3 HOH A 45 308 45 HOH HOH . C 3 HOH A 46 309 46 HOH HOH . C 3 HOH A 47 310 47 HOH HOH . C 3 HOH A 48 311 48 HOH HOH . C 3 HOH A 49 312 49 HOH HOH . C 3 HOH A 50 313 50 HOH HOH . C 3 HOH A 51 314 51 HOH HOH . C 3 HOH A 52 315 52 HOH HOH . C 3 HOH A 53 316 53 HOH HOH . C 3 HOH A 54 317 54 HOH HOH . C 3 HOH A 55 318 55 HOH HOH . C 3 HOH A 56 319 56 HOH HOH . C 3 HOH A 57 320 57 HOH HOH . C 3 HOH A 58 321 58 HOH HOH . C 3 HOH A 59 322 59 HOH HOH . C 3 HOH A 60 323 60 HOH HOH . C 3 HOH A 61 324 61 HOH HOH . C 3 HOH A 62 325 62 HOH HOH . C 3 HOH A 63 326 63 HOH HOH . C 3 HOH A 64 327 64 HOH HOH . C 3 HOH A 65 328 65 HOH HOH . C 3 HOH A 66 329 66 HOH HOH . C 3 HOH A 67 330 67 HOH HOH . C 3 HOH A 68 331 68 HOH HOH . C 3 HOH A 69 332 69 HOH HOH . C 3 HOH A 70 333 70 HOH HOH . C 3 HOH A 71 334 71 HOH HOH . C 3 HOH A 72 335 72 HOH HOH . C 3 HOH A 73 336 73 HOH HOH . C 3 HOH A 74 337 74 HOH HOH . C 3 HOH A 75 338 75 HOH HOH . C 3 HOH A 76 339 76 HOH HOH . C 3 HOH A 77 340 77 HOH HOH . C 3 HOH A 78 341 78 HOH HOH . C 3 HOH A 79 342 79 HOH HOH . C 3 HOH A 80 343 80 HOH HOH . C 3 HOH A 81 344 81 HOH HOH . C 3 HOH A 82 345 82 HOH HOH . C 3 HOH A 83 346 83 HOH HOH . C 3 HOH A 84 347 84 HOH HOH . C 3 HOH A 85 348 85 HOH HOH . C 3 HOH A 86 349 86 HOH HOH . C 3 HOH A 87 350 87 HOH HOH . C 3 HOH A 88 351 88 HOH HOH . C 3 HOH A 89 352 89 HOH HOH . C 3 HOH A 90 353 90 HOH HOH . C 3 HOH A 91 354 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . B 2 14.253 -4.968 -23.223 1 58.68 ? PG GTP 263 A 1 HETATM 2 O O1G GTP . . . B 2 13.761 -3.619 -23.754 1 54.67 ? O1G GTP 263 A 1 HETATM 3 O O2G GTP . . . B 2 14.457 -4.863 -21.718 1 60.8 ? O2G GTP 263 A 1 HETATM 4 O O3G GTP . . . B 2 15.591 -5.376 -23.826 1 59.04 ? O3G GTP 263 A 1 HETATM 5 O O3B GTP . . . B 2 13.216 -6.179 -23.509 1 51.83 ? O3B GTP 263 A 1 HETATM 6 P PB GTP . . . B 2 12.476 -6.432 -24.92 1 46.64 ? PB GTP 263 A 1 HETATM 7 O O1B GTP . . . B 2 11.416 -5.374 -25.131 1 41.99 ? O1B GTP 263 A 1 HETATM 8 O O2B GTP . . . B 2 13.462 -6.474 -26.061 1 47.69 ? O2B GTP 263 A 1 HETATM 9 O O3A GTP . . . B 2 11.738 -7.805 -24.628 1 44.12 ? O3A GTP 263 A 1 HETATM 10 P PA GTP . . . B 2 12.255 -9.296 -24.795 1 43.43 ? PA GTP 263 A 1 HETATM 11 O O1A GTP . . . B 2 11.857 -9.791 -26.162 1 43.8 ? O1A GTP 263 A 1 HETATM 12 O O2A GTP . . . B 2 13.698 -9.526 -24.449 1 43.93 ? O2A GTP 263 A 1 HETATM 13 O O5' GTP . . . B 2 11.268 -10.026 -23.753 1 44.85 ? O5' GTP 263 A 1 HETATM 14 C C5' GTP . . . B 2 11.481 -10.009 -22.358 1 43.28 ? C5' GTP 263 A 1 HETATM 15 C C4' GTP . . . B 2 10.925 -11.313 -21.811 1 43.41 ? C4' GTP 263 A 1 HETATM 16 O O4' GTP . . . B 2 9.598 -11.484 -22.263 1 43.84 ? O4' GTP 263 A 1 HETATM 17 C C3' GTP . . . B 2 11.696 -12.51 -22.314 1 44.01 ? C3' GTP 263 A 1 HETATM 18 O O3' GTP . . . B 2 11.86 -13.41 -21.238 1 46.8 ? O3' GTP 263 A 1 HETATM 19 C C2' GTP . . . B 2 10.808 -13.11 -23.38 1 43.34 ? C2' GTP 263 A 1 HETATM 20 O O2' GTP . . . B 2 10.99 -14.501 -23.424 1 46.91 ? O2' GTP 263 A 1 HETATM 21 C C1' GTP . . . B 2 9.421 -12.732 -22.9 1 40.88 ? C1' GTP 263 A 1 HETATM 22 N N9 GTP . . . B 2 8.386 -12.589 -23.955 1 40.32 ? N9 GTP 263 A 1 HETATM 23 C C8 GTP . . . B 2 8.455 -11.837 -25.114 1 38.66 ? C8 GTP 263 A 1 HETATM 24 N N7 GTP . . . B 2 7.287 -11.977 -25.773 1 39.25 ? N7 GTP 263 A 1 HETATM 25 C C5 GTP . . . B 2 6.477 -12.814 -25.07 1 39.04 ? C5 GTP 263 A 1 HETATM 26 C C6 GTP . . . B 2 5.185 -13.286 -25.289 1 39.59 ? C6 GTP 263 A 1 HETATM 27 O O6 GTP . . . B 2 4.561 -12.958 -26.304 1 39.4 ? O6 GTP 263 A 1 HETATM 28 N N1 GTP . . . B 2 4.598 -14.138 -24.363 1 39.72 ? N1 GTP 263 A 1 HETATM 29 C C2 GTP . . . B 2 5.304 -14.512 -23.23 1 39.8 ? C2 GTP 263 A 1 HETATM 30 N N2 GTP . . . B 2 4.756 -15.328 -22.34 1 39.42 ? N2 GTP 263 A 1 HETATM 31 N N3 GTP . . . B 2 6.583 -14.029 -23.02 1 39.71 ? N3 GTP 263 A 1 HETATM 32 C C4 GTP . . . B 2 7.159 -13.198 -23.923 1 38.73 ? C4 GTP 263 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #