data_3CNS # _model_server_result.job_id S8rBDAEma2amDDYnKWCQYg _model_server_result.datetime_utc '2024-11-15 03:03:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cns # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":518}' # _entry.id 3CNS # _exptl.entry_id 3CNS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 263.378 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{(1S)-3-[(4-aminobutyl)amino]-1-methylpropyl}benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CNS _cell.length_a 102.28 _cell.length_b 215.133 _cell.length_c 117.84 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CNS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 221 A CYS 221 1_555 A SG CYS 238 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf2 B SG CYS 221 B CYS 221 1_555 B SG CYS 238 B CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? # _chem_comp.formula 'C15 H25 N3 O' _chem_comp.formula_weight 263.378 _chem_comp.id SP8 _chem_comp.mon_nstd_flag . _chem_comp.name N-{(1S)-3-[(4-aminobutyl)amino]-1-methylpropyl}benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms S-Bz-MeSpermidine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAE CAD SP8 doub 381 n y CAE CAF SP8 sing 382 n y CAD CAC SP8 sing 383 n y CAC CAR SP8 doub 384 n y CAR CAS SP8 sing 385 n y CAS CAF SP8 doub 386 n y CAF CAG SP8 sing 387 n n CAG OAA SP8 doub 388 n n CAG NAH SP8 sing 389 n n NAH CAI SP8 sing 390 n n CAI CAB SP8 sing 391 n n CAI CAJ SP8 sing 392 n n CAJ CAK SP8 sing 393 n n CAK NAL SP8 sing 394 n n NAL CAM SP8 sing 395 n n CAM CAN SP8 sing 396 n n CAN CAO SP8 sing 397 n n CAO CAP SP8 sing 398 n n CAP NAQ SP8 sing 399 n n CAE HAE SP8 sing 400 n n CAD HAD SP8 sing 401 n n CAC HAC SP8 sing 402 n n CAR HAR SP8 sing 403 n n CAS HAS SP8 sing 404 n n NAH HNAH SP8 sing 405 n n CAI HAI SP8 sing 406 n n CAB HAB SP8 sing 407 n n CAB HABA SP8 sing 408 n n CAB HABB SP8 sing 409 n n CAJ HAJ SP8 sing 410 n n CAJ HAJA SP8 sing 411 n n CAK HAK SP8 sing 412 n n CAK HAKA SP8 sing 413 n n NAL HNAL SP8 sing 414 n n CAM HAM SP8 sing 415 n n CAM HAMA SP8 sing 416 n n CAN HAN SP8 sing 417 n n CAN HANA SP8 sing 418 n n CAO HAO SP8 sing 419 n n CAO HAOA SP8 sing 420 n n CAP HAP SP8 sing 421 n n CAP HAPA SP8 sing 422 n n NAQ HNAQ SP8 sing 423 n n NAQ HNAA SP8 sing 424 n n # _atom_sites.entry_id 3CNS _atom_sites.fract_transf_matrix[1][1] 0.009777 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004648 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008486 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 517 3 FAD FAD . D 3 SP8 A 1 518 1 SP8 SP8 . E 2 FAD B 1 517 4 FAD FAD . F 3 SP8 B 1 518 2 SP8 SP8 . G 4 HOH A 1 519 2 HOH TIP . G 4 HOH A 2 520 3 HOH TIP . G 4 HOH A 3 521 4 HOH TIP . G 4 HOH A 4 522 5 HOH TIP . G 4 HOH A 5 523 6 HOH TIP . G 4 HOH A 6 524 7 HOH TIP . G 4 HOH A 7 525 8 HOH TIP . G 4 HOH A 8 526 9 HOH TIP . G 4 HOH A 9 527 10 HOH TIP . G 4 HOH A 10 528 14 HOH TIP . G 4 HOH A 11 529 15 HOH TIP . G 4 HOH A 12 530 18 HOH TIP . G 4 HOH A 13 531 19 HOH TIP . G 4 HOH A 14 532 20 HOH TIP . G 4 HOH A 15 533 22 HOH TIP . G 4 HOH A 16 534 23 HOH TIP . G 4 HOH A 17 535 24 HOH TIP . G 4 HOH A 18 536 25 HOH TIP . G 4 HOH A 19 537 27 HOH TIP . G 4 HOH A 20 538 31 HOH TIP . G 4 HOH A 21 539 32 HOH TIP . G 4 HOH A 22 540 33 HOH TIP . G 4 HOH A 23 541 35 HOH TIP . G 4 HOH A 24 542 39 HOH TIP . G 4 HOH A 25 543 40 HOH TIP . G 4 HOH A 26 544 41 HOH TIP . G 4 HOH A 27 545 44 HOH TIP . G 4 HOH A 28 546 48 HOH TIP . G 4 HOH A 29 547 50 HOH TIP . G 4 HOH A 30 548 52 HOH TIP . G 4 HOH A 31 549 54 HOH TIP . G 4 HOH A 32 550 55 HOH TIP . G 4 HOH A 33 551 57 HOH TIP . G 4 HOH A 34 552 60 HOH TIP . G 4 HOH A 35 553 61 HOH TIP . G 4 HOH A 36 554 62 HOH TIP . G 4 HOH A 37 555 64 HOH TIP . G 4 HOH A 38 556 65 HOH TIP . G 4 HOH A 39 557 66 HOH TIP . G 4 HOH A 40 558 67 HOH TIP . G 4 HOH A 41 559 70 HOH TIP . G 4 HOH A 42 560 73 HOH TIP . G 4 HOH A 43 561 74 HOH TIP . G 4 HOH A 44 562 76 HOH TIP . G 4 HOH A 45 563 77 HOH TIP . G 4 HOH A 46 564 80 HOH TIP . G 4 HOH A 47 565 83 HOH TIP . G 4 HOH A 48 566 86 HOH TIP . G 4 HOH A 49 567 89 HOH TIP . G 4 HOH A 50 568 90 HOH TIP . G 4 HOH A 51 569 91 HOH TIP . G 4 HOH A 52 570 95 HOH TIP . G 4 HOH A 53 571 97 HOH TIP . G 4 HOH A 54 572 99 HOH TIP . G 4 HOH A 55 573 101 HOH TIP . G 4 HOH A 56 574 102 HOH TIP . G 4 HOH A 57 575 103 HOH TIP . G 4 HOH A 58 576 106 HOH TIP . G 4 HOH A 59 577 107 HOH TIP . G 4 HOH A 60 578 108 HOH TIP . G 4 HOH A 61 579 109 HOH TIP . G 4 HOH A 62 580 110 HOH TIP . G 4 HOH A 63 581 114 HOH TIP . H 4 HOH B 1 519 1 HOH TIP . H 4 HOH B 2 520 11 HOH TIP . H 4 HOH B 3 521 12 HOH TIP . H 4 HOH B 4 522 13 HOH TIP . H 4 HOH B 5 523 16 HOH TIP . H 4 HOH B 6 524 17 HOH TIP . H 4 HOH B 7 525 21 HOH TIP . H 4 HOH B 8 526 26 HOH TIP . H 4 HOH B 9 527 28 HOH TIP . H 4 HOH B 10 528 29 HOH TIP . H 4 HOH B 11 529 30 HOH TIP . H 4 HOH B 12 530 34 HOH TIP . H 4 HOH B 13 531 36 HOH TIP . H 4 HOH B 14 532 37 HOH TIP . H 4 HOH B 15 533 38 HOH TIP . H 4 HOH B 16 534 42 HOH TIP . H 4 HOH B 17 535 43 HOH TIP . H 4 HOH B 18 536 45 HOH TIP . H 4 HOH B 19 537 46 HOH TIP . H 4 HOH B 20 538 47 HOH TIP . H 4 HOH B 21 539 49 HOH TIP . H 4 HOH B 22 540 51 HOH TIP . H 4 HOH B 23 541 53 HOH TIP . H 4 HOH B 24 542 56 HOH TIP . H 4 HOH B 25 543 58 HOH TIP . H 4 HOH B 26 544 59 HOH TIP . H 4 HOH B 27 545 63 HOH TIP . H 4 HOH B 28 546 68 HOH TIP . H 4 HOH B 29 547 69 HOH TIP . H 4 HOH B 30 548 71 HOH TIP . H 4 HOH B 31 549 72 HOH TIP . H 4 HOH B 32 550 75 HOH TIP . H 4 HOH B 33 551 78 HOH TIP . H 4 HOH B 34 552 79 HOH TIP . H 4 HOH B 35 553 81 HOH TIP . H 4 HOH B 36 554 82 HOH TIP . H 4 HOH B 37 555 84 HOH TIP . H 4 HOH B 38 556 85 HOH TIP . H 4 HOH B 39 557 87 HOH TIP . H 4 HOH B 40 558 88 HOH TIP . H 4 HOH B 41 559 92 HOH TIP . H 4 HOH B 42 560 93 HOH TIP . H 4 HOH B 43 561 94 HOH TIP . H 4 HOH B 44 562 96 HOH TIP . H 4 HOH B 45 563 98 HOH TIP . H 4 HOH B 46 564 100 HOH TIP . H 4 HOH B 47 565 104 HOH TIP . H 4 HOH B 48 566 105 HOH TIP . H 4 HOH B 49 567 111 HOH TIP . H 4 HOH B 50 568 112 HOH TIP . H 4 HOH B 51 569 113 HOH TIP . H 4 HOH B 52 570 115 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAE SP8 . . . D 3 58.77 -24.146 -2.806 1 70.1 ? CAE SP8 518 A 1 HETATM 2 C CAD SP8 . . . D 3 57.448 -24.386 -2.449 1 70.86 ? CAD SP8 518 A 1 HETATM 3 C CAC SP8 . . . D 3 56.659 -25.232 -3.221 1 71.35 ? CAC SP8 518 A 1 HETATM 4 C CAR SP8 . . . D 3 57.186 -25.844 -4.352 1 71.35 ? CAR SP8 518 A 1 HETATM 5 C CAS SP8 . . . D 3 58.509 -25.605 -4.708 1 71.05 ? CAS SP8 518 A 1 HETATM 6 C CAF SP8 . . . D 3 59.297 -24.758 -3.936 1 70.73 ? CAF SP8 518 A 1 HETATM 7 C CAG SP8 . . . D 3 60.746 -24.502 -4.355 1 69.76 ? CAG SP8 518 A 1 HETATM 8 O OAA SP8 . . . D 3 61.275 -25.21 -5.21 1 69.55 ? OAA SP8 518 A 1 HETATM 9 N NAH SP8 . . . D 3 61.364 -23.502 -3.731 1 68.11 ? NAH SP8 518 A 1 HETATM 10 C CAI SP8 . . . D 3 62.757 -23.168 -4.063 1 67 ? CAI SP8 518 A 1 HETATM 11 C CAB SP8 . . . D 3 62.937 -23.293 -5.576 1 67.05 ? CAB SP8 518 A 1 HETATM 12 C CAJ SP8 . . . D 3 63.136 -21.757 -3.607 1 64.09 ? CAJ SP8 518 A 1 HETATM 13 C CAK SP8 . . . D 3 63.046 -21.594 -2.088 1 61.57 ? CAK SP8 518 A 1 HETATM 14 N NAL SP8 . . . D 3 63.784 -22.664 -1.402 1 59.56 ? NAL SP8 518 A 1 HETATM 15 C CAM SP8 . . . D 3 65.201 -22.709 -1.792 1 58.91 ? CAM SP8 518 A 1 HETATM 16 C CAN SP8 . . . D 3 65.858 -23.88 -1.057 1 59.07 ? CAN SP8 518 A 1 HETATM 17 C CAO SP8 . . . D 3 67.312 -24.084 -1.484 1 59.09 ? CAO SP8 518 A 1 HETATM 18 C CAP SP8 . . . D 3 67.94 -25.257 -0.727 1 59.36 ? CAP SP8 518 A 1 HETATM 19 N NAQ SP8 . . . D 3 69.317 -25.47 -1.197 1 58.48 ? NAQ SP8 518 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 60 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 19 #