data_3CNT # _model_server_result.job_id Hs1IBI2t3n83tsWwH5iZdA _model_server_result.datetime_utc '2024-11-09 23:24:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cnt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":517}' # _entry.id 3CNT # _exptl.entry_id 3CNT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.94 _cell.angle_gamma 90 _cell.entry_id 3CNT _cell.length_a 161.858 _cell.length_b 102.413 _cell.length_c 77.204 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CNT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 221 B CYS 221 1_555 A SG CYS 238 B CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 221 A CYS 221 1_555 B SG CYS 238 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 3CNT _atom_sites.fract_transf_matrix[1][1] 0.006178 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000534 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009764 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD B 1 517 4 FAD FAD . D 3 SP9 B 1 518 2 SP9 SP9 . E 2 FAD A 1 517 3 FAD FAD . F 4 HOH B 1 519 3 HOH TIP . F 4 HOH B 2 520 5 HOH TIP . F 4 HOH B 3 521 7 HOH TIP . F 4 HOH B 4 522 8 HOH TIP . F 4 HOH B 5 523 10 HOH TIP . F 4 HOH B 6 524 11 HOH TIP . F 4 HOH B 7 525 12 HOH TIP . F 4 HOH B 8 526 17 HOH TIP . F 4 HOH B 9 527 20 HOH TIP . F 4 HOH B 10 528 21 HOH TIP . F 4 HOH B 11 529 24 HOH TIP . F 4 HOH B 12 530 25 HOH TIP . F 4 HOH B 13 531 26 HOH TIP . F 4 HOH B 14 532 28 HOH TIP . F 4 HOH B 15 533 30 HOH TIP . F 4 HOH B 16 534 34 HOH TIP . F 4 HOH B 17 535 36 HOH TIP . F 4 HOH B 18 536 41 HOH TIP . F 4 HOH B 19 537 46 HOH TIP . F 4 HOH B 20 538 50 HOH TIP . F 4 HOH B 21 539 51 HOH TIP . G 4 HOH A 1 518 1 HOH TIP . G 4 HOH A 2 519 2 HOH TIP . G 4 HOH A 3 520 4 HOH TIP . G 4 HOH A 4 521 6 HOH TIP . G 4 HOH A 5 522 9 HOH TIP . G 4 HOH A 6 523 13 HOH TIP . G 4 HOH A 7 524 14 HOH TIP . G 4 HOH A 8 525 15 HOH TIP . G 4 HOH A 9 526 16 HOH TIP . G 4 HOH A 10 527 18 HOH TIP . G 4 HOH A 11 528 19 HOH TIP . G 4 HOH A 12 529 22 HOH TIP . G 4 HOH A 13 530 23 HOH TIP . G 4 HOH A 14 531 27 HOH TIP . G 4 HOH A 15 532 29 HOH TIP . G 4 HOH A 16 533 31 HOH TIP . G 4 HOH A 17 534 32 HOH TIP . G 4 HOH A 18 535 33 HOH TIP . G 4 HOH A 19 536 35 HOH TIP . G 4 HOH A 20 537 37 HOH TIP . G 4 HOH A 21 538 38 HOH TIP . G 4 HOH A 22 539 39 HOH TIP . G 4 HOH A 23 540 40 HOH TIP . G 4 HOH A 24 541 42 HOH TIP . G 4 HOH A 25 542 43 HOH TIP . G 4 HOH A 26 543 44 HOH TIP . G 4 HOH A 27 544 45 HOH TIP . G 4 HOH A 28 545 47 HOH TIP . G 4 HOH A 29 546 48 HOH TIP . G 4 HOH A 30 547 49 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 2 6.027 31.642 12.746 1 33.74 ? PA FAD 517 A 1 HETATM 2 O O1A FAD . . . E 2 6.758 32.286 11.466 1 35.25 ? O1A FAD 517 A 1 HETATM 3 O O2A FAD . . . E 2 5.998 30.162 12.748 1 35.19 ? O2A FAD 517 A 1 HETATM 4 O O5B FAD . . . E 2 4.556 32.281 12.789 1 33.12 ? O5B FAD 517 A 1 HETATM 5 C C5B FAD . . . E 2 4.376 33.659 12.475 1 32.1 ? C5B FAD 517 A 1 HETATM 6 C C4B FAD . . . E 2 3.047 33.823 11.74 1 32.84 ? C4B FAD 517 A 1 HETATM 7 O O4B FAD . . . E 2 2.86 35.203 11.401 1 37.48 ? O4B FAD 517 A 1 HETATM 8 C C3B FAD . . . E 2 3.038 33.061 10.413 1 31.58 ? C3B FAD 517 A 1 HETATM 9 O O3B FAD . . . E 2 1.909 32.185 10.405 1 29.94 ? O3B FAD 517 A 1 HETATM 10 C C2B FAD . . . E 2 2.862 34.173 9.376 1 33.24 ? C2B FAD 517 A 1 HETATM 11 O O2B FAD . . . E 2 2.051 33.698 8.298 1 34.24 ? O2B FAD 517 A 1 HETATM 12 C C1B FAD . . . E 2 2.054 35.16 10.217 1 33.55 ? C1B FAD 517 A 1 HETATM 13 N N9A FAD . . . E 2 2 36.539 9.686 1 30.77 ? N9A FAD 517 A 1 HETATM 14 C C8A FAD . . . E 2 3.052 37.305 9.404 1 30.59 ? C8A FAD 517 A 1 HETATM 15 N N7A FAD . . . E 2 2.645 38.548 9.156 1 29.1 ? N7A FAD 517 A 1 HETATM 16 C C5A FAD . . . E 2 1.322 38.571 9.271 1 28.8 ? C5A FAD 517 A 1 HETATM 17 C C6A FAD . . . E 2 0.36 39.562 9.137 1 29.25 ? C6A FAD 517 A 1 HETATM 18 N N6A FAD . . . E 2 0.718 40.821 8.903 1 27.95 ? N6A FAD 517 A 1 HETATM 19 N N1A FAD . . . E 2 -0.929 39.234 9.307 1 29.29 ? N1A FAD 517 A 1 HETATM 20 C C2A FAD . . . E 2 -1.287 37.997 9.605 1 29.37 ? C2A FAD 517 A 1 HETATM 21 N N3A FAD . . . E 2 -0.399 37.029 9.752 1 27.05 ? N3A FAD 517 A 1 HETATM 22 C C4A FAD . . . E 2 0.906 37.287 9.594 1 28.73 ? C4A FAD 517 A 1 HETATM 23 N N1 FAD . . . E 2 13.068 25.009 15.358 1 39.46 ? N1 FAD 517 A 1 HETATM 24 C C2 FAD . . . E 2 13.285 23.87 16.141 1 41.72 ? C2 FAD 517 A 1 HETATM 25 O O2 FAD . . . E 2 13.011 23.881 17.34 1 44.14 ? O2 FAD 517 A 1 HETATM 26 N N3 FAD . . . E 2 13.814 22.716 15.548 1 43.35 ? N3 FAD 517 A 1 HETATM 27 C C4 FAD . . . E 2 14.118 22.701 14.181 1 40.66 ? C4 FAD 517 A 1 HETATM 28 O O4 FAD . . . E 2 14.546 21.677 13.653 1 39.07 ? O4 FAD 517 A 1 HETATM 29 C C4X FAD . . . E 2 13.895 23.833 13.407 1 39.99 ? C4X FAD 517 A 1 HETATM 30 N N5 FAD . . . E 2 14.177 23.809 12.036 1 40.64 ? N5 FAD 517 A 1 HETATM 31 C C5X FAD . . . E 2 13.924 24.939 11.249 1 40.52 ? C5X FAD 517 A 1 HETATM 32 C C6 FAD . . . E 2 14.097 24.877 9.872 1 41.29 ? C6 FAD 517 A 1 HETATM 33 C C7 FAD . . . E 2 13.73 25.954 9.073 1 41.9 ? C7 FAD 517 A 1 HETATM 34 C C7M FAD . . . E 2 13.949 25.888 7.56 1 44.52 ? C7M FAD 517 A 1 HETATM 35 C C8 FAD . . . E 2 13.188 27.094 9.655 1 40.58 ? C8 FAD 517 A 1 HETATM 36 C C8M FAD . . . E 2 12.722 28.259 8.78 1 35.93 ? C8M FAD 517 A 1 HETATM 37 C C9 FAD . . . E 2 13.028 27.162 11.035 1 40.82 ? C9 FAD 517 A 1 HETATM 38 C C9A FAD . . . E 2 13.397 26.085 11.833 1 39.61 ? C9A FAD 517 A 1 HETATM 39 N N10 FAD . . . E 2 13.172 26.126 13.215 1 40.41 ? N10 FAD 517 A 1 HETATM 40 C C10 FAD . . . E 2 13.376 24.981 13.993 1 40.36 ? C10 FAD 517 A 1 HETATM 41 C C1' FAD . . . E 2 12.642 27.353 13.848 1 37.93 ? C1' FAD 517 A 1 HETATM 42 C C2' FAD . . . E 2 11.167 27.226 14.23 1 34.23 ? C2' FAD 517 A 1 HETATM 43 O O2' FAD . . . E 2 10.443 26.729 13.103 1 34.91 ? O2' FAD 517 A 1 HETATM 44 C C3' FAD . . . E 2 10.644 28.615 14.596 1 34.06 ? C3' FAD 517 A 1 HETATM 45 O O3' FAD . . . E 2 11.381 29.122 15.711 1 36.39 ? O3' FAD 517 A 1 HETATM 46 C C4' FAD . . . E 2 9.157 28.604 14.945 1 32.15 ? C4' FAD 517 A 1 HETATM 47 O O4' FAD . . . E 2 8.423 27.903 13.939 1 34.42 ? O4' FAD 517 A 1 HETATM 48 C C5' FAD . . . E 2 8.662 30.047 15.029 1 34.59 ? C5' FAD 517 A 1 HETATM 49 O O5' FAD . . . E 2 7.267 30.115 15.33 1 35.18 ? O5' FAD 517 A 1 HETATM 50 P P FAD . . . E 2 6.598 31.571 15.463 1 35.18 ? P FAD 517 A 1 HETATM 51 O O1P FAD . . . E 2 7.546 32.419 16.447 1 36.93 ? O1P FAD 517 A 1 HETATM 52 O O2P FAD . . . E 2 5.196 31.503 15.932 1 36.56 ? O2P FAD 517 A 1 HETATM 53 O O3P FAD . . . E 2 6.781 32.262 14.023 1 36.36 ? O3P FAD 517 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #