data_3CNX
#
_model_server_result.job_id            C5913InRh3c7WVwJbvnn7Q 
_model_server_result.datetime_utc      '2024-11-13 12:04:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3cnx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":203}' 
#
_entry.id    3CNX 
#
_exptl.entry_id    3CNX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3CNX 
_cell.length_a            103 
_cell.length_b            128.75 
_cell.length_c            44.38 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CNX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,F,G,H,I,J,K,L,M,N,O,U,V 1 1 
C,P,Q,R,S,T,W 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_765 -x+2,-y+1,z -1 0 0 0 -1 0 0 0 1 206 128.75 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 M N N 
? 8 N N N 
? 8 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 24 A ALA 23 1_555 A N MSE 25 A MSE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? 
covale ? covale2 A C MSE 25 A MSE 24 1_555 A N GLU 26 A GLU 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 A C ILE 81 A ILE 80 1_555 A N MSE 82 A MSE 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale4 A C MSE 82 A MSE 81 1_555 A N ALA 83 A ALA 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale5 B C ALA 24 B ALA 23 1_555 B N MSE 25 B MSE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? 
covale ? covale6 B C MSE 25 B MSE 24 1_555 B N GLU 26 B GLU 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? 
covale ? covale7 B C ILE 81 B ILE 80 1_555 B N MSE 82 B MSE 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale8 B C MSE 82 B MSE 81 1_555 B N ALA 83 B ALA 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale9 C C ALA 24 C ALA 23 1_555 C N MSE 25 C MSE 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale10 C C MSE 25 C MSE 24 1_555 C N GLU 26 C GLU 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale11 C C ILE 81 C ILE 80 1_555 C N MSE 82 C MSE 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? 
covale ? covale12 C C MSE 82 C MSE 81 1_555 C N ALA 83 C ALA 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
metalc ? metalc1 B OE2 GLU 26 B GLU 25 1_555 I MG MG . B MG 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc2 B O PHE 90 B PHE 89 1_555 I MG MG . B MG 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc3 B OE2 GLU 124 B GLU 123 1_555 P MG MG . C MG 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc4 I MG MG . B MG 170 1_555 V O HOH . B HOH 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc5 I MG MG . B MG 170 1_555 V O HOH . B HOH 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc6 I MG MG . B MG 170 1_555 C OE2 GLU 124 C GLU 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc7 C OE2 GLU 26 C GLU 25 1_555 P MG MG . C MG 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc8 C O PHE 90 C PHE 89 1_555 P MG MG . C MG 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc9 P MG MG . C MG 170 1_555 W O HOH . C HOH 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3CNX 
_atom_sites.fract_transf_matrix[1][1]    0.009709 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007767 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022533 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 CL A 1 170 6 CL CL . 
E 3 UNL A 1 201 201 UNL UNL . 
F 4 PGE A 1 202 16 PGE PGE . 
G 5 PEG A 1 203 12 PEG PEG . 
H 5 PEG A 1 204 15 PEG PEG . 
I 6 MG B 1 170 4 MG MG . 
J 2 CL B 1 171 8 CL CL . 
K 3 UNL B 1 201 201 UNL UNL . 
L 7 PG6 B 1 202 17 PG6 PG6 . 
M 8 GOL B 1 203 9 GOL GOL . 
N 8 GOL B 1 204 10 GOL GOL . 
O 5 PEG B 1 205 14 PEG PEG . 
P 6 MG C 1 170 5 MG MG . 
Q 2 CL C 1 171 7 CL CL . 
R 3 UNL C 1 201 201 UNL UNL . 
S 8 GOL C 1 202 11 GOL GOL . 
T 5 PEG C 1 203 13 PEG PEG . 
U 9 HOH A 1 205 20 HOH HOH . 
U 9 HOH A 2 206 22 HOH HOH . 
U 9 HOH A 3 207 26 HOH HOH . 
U 9 HOH A 4 208 28 HOH HOH . 
U 9 HOH A 5 209 29 HOH HOH . 
U 9 HOH A 6 210 31 HOH HOH . 
U 9 HOH A 7 211 34 HOH HOH . 
U 9 HOH A 8 212 36 HOH HOH . 
U 9 HOH A 9 213 37 HOH HOH . 
U 9 HOH A 10 214 38 HOH HOH . 
U 9 HOH A 11 215 40 HOH HOH . 
U 9 HOH A 12 216 44 HOH HOH . 
U 9 HOH A 13 217 45 HOH HOH . 
U 9 HOH A 14 218 49 HOH HOH . 
U 9 HOH A 15 219 53 HOH HOH . 
U 9 HOH A 16 220 57 HOH HOH . 
U 9 HOH A 17 221 62 HOH HOH . 
U 9 HOH A 18 222 63 HOH HOH . 
U 9 HOH A 19 223 64 HOH HOH . 
U 9 HOH A 20 224 67 HOH HOH . 
U 9 HOH A 21 225 69 HOH HOH . 
U 9 HOH A 22 226 74 HOH HOH . 
U 9 HOH A 23 227 82 HOH HOH . 
U 9 HOH A 24 228 89 HOH HOH . 
U 9 HOH A 25 229 91 HOH HOH . 
U 9 HOH A 26 230 92 HOH HOH . 
U 9 HOH A 27 231 93 HOH HOH . 
U 9 HOH A 28 232 102 HOH HOH . 
U 9 HOH A 29 233 103 HOH HOH . 
V 9 HOH B 1 206 18 HOH HOH . 
V 9 HOH B 2 207 21 HOH HOH . 
V 9 HOH B 3 208 23 HOH HOH . 
V 9 HOH B 4 209 24 HOH HOH . 
V 9 HOH B 5 210 27 HOH HOH . 
V 9 HOH B 6 211 30 HOH HOH . 
V 9 HOH B 7 212 32 HOH HOH . 
V 9 HOH B 8 213 39 HOH HOH . 
V 9 HOH B 9 214 41 HOH HOH . 
V 9 HOH B 10 215 50 HOH HOH . 
V 9 HOH B 11 216 54 HOH HOH . 
V 9 HOH B 12 217 59 HOH HOH . 
V 9 HOH B 13 218 66 HOH HOH . 
V 9 HOH B 14 219 68 HOH HOH . 
V 9 HOH B 15 220 70 HOH HOH . 
V 9 HOH B 16 221 73 HOH HOH . 
V 9 HOH B 17 222 78 HOH HOH . 
V 9 HOH B 18 223 79 HOH HOH . 
V 9 HOH B 19 224 80 HOH HOH . 
V 9 HOH B 20 225 83 HOH HOH . 
V 9 HOH B 21 226 87 HOH HOH . 
V 9 HOH B 22 227 88 HOH HOH . 
V 9 HOH B 23 228 94 HOH HOH . 
V 9 HOH B 24 229 95 HOH HOH . 
V 9 HOH B 25 230 96 HOH HOH . 
V 9 HOH B 26 231 100 HOH HOH . 
V 9 HOH B 27 232 101 HOH HOH . 
V 9 HOH B 28 233 104 HOH HOH . 
V 9 HOH B 29 234 107 HOH HOH . 
V 9 HOH B 30 235 108 HOH HOH . 
V 9 HOH B 31 236 112 HOH HOH . 
W 9 HOH C 1 204 19 HOH HOH . 
W 9 HOH C 2 205 25 HOH HOH . 
W 9 HOH C 3 206 33 HOH HOH . 
W 9 HOH C 4 207 35 HOH HOH . 
W 9 HOH C 5 208 42 HOH HOH . 
W 9 HOH C 6 209 43 HOH HOH . 
W 9 HOH C 7 210 46 HOH HOH . 
W 9 HOH C 8 211 47 HOH HOH . 
W 9 HOH C 9 212 48 HOH HOH . 
W 9 HOH C 10 213 51 HOH HOH . 
W 9 HOH C 11 214 52 HOH HOH . 
W 9 HOH C 12 215 55 HOH HOH . 
W 9 HOH C 13 216 56 HOH HOH . 
W 9 HOH C 14 217 58 HOH HOH . 
W 9 HOH C 15 218 60 HOH HOH . 
W 9 HOH C 16 219 61 HOH HOH . 
W 9 HOH C 17 220 65 HOH HOH . 
W 9 HOH C 18 221 71 HOH HOH . 
W 9 HOH C 19 222 72 HOH HOH . 
W 9 HOH C 20 223 75 HOH HOH . 
W 9 HOH C 21 224 76 HOH HOH . 
W 9 HOH C 22 225 77 HOH HOH . 
W 9 HOH C 23 226 81 HOH HOH . 
W 9 HOH C 24 227 84 HOH HOH . 
W 9 HOH C 25 228 85 HOH HOH . 
W 9 HOH C 26 229 86 HOH HOH . 
W 9 HOH C 27 230 90 HOH HOH . 
W 9 HOH C 28 231 97 HOH HOH . 
W 9 HOH C 29 232 98 HOH HOH . 
W 9 HOH C 30 233 99 HOH HOH . 
W 9 HOH C 31 234 105 HOH HOH . 
W 9 HOH C 32 235 106 HOH HOH . 
W 9 HOH C 33 236 109 HOH HOH . 
W 9 HOH C 34 237 110 HOH HOH . 
W 9 HOH C 35 238 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 8 79.635 14.371 15.472 1 93.65 ? C1 GOL 203 B 1 
HETATM 2 O O1 GOL . . . M 8 79.751 13.486 14.381 1 93.68 ? O1 GOL 203 B 1 
HETATM 3 C C2 GOL . . . M 8 79.1 13.578 16.657 1 93.71 ? C2 GOL 203 B 1 
HETATM 4 O O2 GOL . . . M 8 77.823 13.066 16.347 1 94.11 ? O2 GOL 203 B 1 
HETATM 5 C C3 GOL . . . M 8 79.037 14.425 17.92 1 93.13 ? C3 GOL 203 B 1 
HETATM 6 O O3 GOL . . . M 8 80.083 13.975 18.74 1 92.46 ? O3 GOL 203 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#