data_3CO4 # _model_server_result.job_id om24kGdY5ZlDpNx_6Bas0Q _model_server_result.datetime_utc '2024-11-16 02:47:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3co4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 3CO4 # _exptl.entry_id 3CO4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 179.171 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-amino-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CO4 _cell.length_a 60.884 _cell.length_b 70.389 _cell.length_c 79.259 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CO4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 140 A ASN 183 1_555 A N MSE 141 A MSE 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 141 A MSE 184 1_555 A N LEU 142 A LEU 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C LEU 142 A LEU 185 1_555 A N MSE 143 A MSE 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 143 A MSE 186 1_555 A N THR 144 A THR 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C LEU 167 A LEU 210 1_555 A N MSE 168 A MSE 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 A C MSE 168 A MSE 211 1_555 A N SER 169 A SER 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 A C VAL 276 A VAL 319 1_555 A N MSE 277 A MSE 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C MSE 277 A MSE 320 1_555 A N ILE 278 A ILE 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C GLU 301 A GLU 344 1_555 A N MSE 302 A MSE 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 A C MSE 302 A MSE 345 1_555 A N MSE 303 A MSE 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 A C MSE 303 A MSE 346 1_555 A N GLU 304 A GLU 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C6 H13 N O5' _chem_comp.formula_weight 179.171 _chem_comp.id GCS _chem_comp.mon_nstd_flag . _chem_comp.name 2-amino-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-glucosamine;2-amino-2-deoxy-beta-D-glucose;2-amino-2-deoxy-D-glucose;2-amino-2-deoxy-glucose;D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GCS DGlcpNb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GCS b-D-glucopyranosamine 'COMMON NAME' GMML 1 GCS b-D-GlcpN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GCS GlcN 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3CO4 _atom_sites.fract_transf_matrix[1][1] 0.016425 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GCS A 1 401 356 GCS GCS . C 3 HOH A 1 402 2 HOH WAT . C 3 HOH A 2 403 3 HOH WAT . C 3 HOH A 3 404 4 HOH WAT . C 3 HOH A 4 405 5 HOH WAT . C 3 HOH A 5 406 6 HOH WAT . C 3 HOH A 6 407 7 HOH WAT . C 3 HOH A 7 408 8 HOH WAT . C 3 HOH A 8 409 9 HOH WAT . C 3 HOH A 9 410 10 HOH WAT . C 3 HOH A 10 411 11 HOH WAT . C 3 HOH A 11 412 12 HOH WAT . C 3 HOH A 12 413 13 HOH WAT . C 3 HOH A 13 414 14 HOH WAT . C 3 HOH A 14 415 15 HOH WAT . C 3 HOH A 15 416 16 HOH WAT . C 3 HOH A 16 417 17 HOH WAT . C 3 HOH A 17 418 18 HOH WAT . C 3 HOH A 18 419 19 HOH WAT . C 3 HOH A 19 420 20 HOH WAT . C 3 HOH A 20 421 21 HOH WAT . C 3 HOH A 21 422 22 HOH WAT . C 3 HOH A 22 423 23 HOH WAT . C 3 HOH A 23 424 24 HOH WAT . C 3 HOH A 24 425 25 HOH WAT . C 3 HOH A 25 426 26 HOH WAT . C 3 HOH A 26 427 27 HOH WAT . C 3 HOH A 27 428 28 HOH WAT . C 3 HOH A 28 429 29 HOH WAT . C 3 HOH A 29 430 30 HOH WAT . C 3 HOH A 30 431 31 HOH WAT . C 3 HOH A 31 432 32 HOH WAT . C 3 HOH A 32 433 33 HOH WAT . C 3 HOH A 33 434 34 HOH WAT . C 3 HOH A 34 435 35 HOH WAT . C 3 HOH A 35 436 36 HOH WAT . C 3 HOH A 36 437 37 HOH WAT . C 3 HOH A 37 438 38 HOH WAT . C 3 HOH A 38 439 39 HOH WAT . C 3 HOH A 39 440 40 HOH WAT . C 3 HOH A 40 441 41 HOH WAT . C 3 HOH A 41 442 42 HOH WAT . C 3 HOH A 42 443 43 HOH WAT . C 3 HOH A 43 444 44 HOH WAT . C 3 HOH A 44 445 45 HOH WAT . C 3 HOH A 45 446 46 HOH WAT . C 3 HOH A 46 447 47 HOH WAT . C 3 HOH A 47 448 48 HOH WAT . C 3 HOH A 48 449 49 HOH WAT . C 3 HOH A 49 450 50 HOH WAT . C 3 HOH A 50 451 51 HOH WAT . C 3 HOH A 51 452 52 HOH WAT . C 3 HOH A 52 453 53 HOH WAT . C 3 HOH A 53 454 54 HOH WAT . C 3 HOH A 54 455 55 HOH WAT . C 3 HOH A 55 456 56 HOH WAT . C 3 HOH A 56 457 57 HOH WAT . C 3 HOH A 57 458 58 HOH WAT . C 3 HOH A 58 459 59 HOH WAT . C 3 HOH A 59 460 60 HOH WAT . C 3 HOH A 60 461 61 HOH WAT . C 3 HOH A 61 462 62 HOH WAT . C 3 HOH A 62 463 63 HOH WAT . C 3 HOH A 63 464 64 HOH WAT . C 3 HOH A 64 465 65 HOH WAT . C 3 HOH A 65 466 66 HOH WAT . C 3 HOH A 66 467 67 HOH WAT . C 3 HOH A 67 468 68 HOH WAT . C 3 HOH A 68 469 69 HOH WAT . C 3 HOH A 69 470 70 HOH WAT . C 3 HOH A 70 471 71 HOH WAT . C 3 HOH A 71 472 72 HOH WAT . C 3 HOH A 72 473 73 HOH WAT . C 3 HOH A 73 474 74 HOH WAT . C 3 HOH A 74 475 75 HOH WAT . C 3 HOH A 75 476 76 HOH WAT . C 3 HOH A 76 477 77 HOH WAT . C 3 HOH A 77 478 78 HOH WAT . C 3 HOH A 78 479 79 HOH WAT . C 3 HOH A 79 480 80 HOH WAT . C 3 HOH A 80 481 81 HOH WAT . C 3 HOH A 81 482 82 HOH WAT . C 3 HOH A 82 483 83 HOH WAT . C 3 HOH A 83 484 84 HOH WAT . C 3 HOH A 84 485 85 HOH WAT . C 3 HOH A 85 486 86 HOH WAT . C 3 HOH A 86 487 87 HOH WAT . C 3 HOH A 87 488 88 HOH WAT . C 3 HOH A 88 489 89 HOH WAT . C 3 HOH A 89 490 90 HOH WAT . C 3 HOH A 90 491 91 HOH WAT . C 3 HOH A 91 492 92 HOH WAT . C 3 HOH A 92 493 93 HOH WAT . C 3 HOH A 93 494 94 HOH WAT . C 3 HOH A 94 495 95 HOH WAT . C 3 HOH A 95 496 96 HOH WAT . C 3 HOH A 96 497 97 HOH WAT . C 3 HOH A 97 498 98 HOH WAT . C 3 HOH A 98 499 99 HOH WAT . C 3 HOH A 99 500 100 HOH WAT . C 3 HOH A 100 501 101 HOH WAT . C 3 HOH A 101 502 102 HOH WAT . C 3 HOH A 102 503 103 HOH WAT . C 3 HOH A 103 504 104 HOH WAT . C 3 HOH A 104 505 105 HOH WAT . C 3 HOH A 105 506 106 HOH WAT . C 3 HOH A 106 507 107 HOH WAT . C 3 HOH A 107 508 108 HOH WAT . C 3 HOH A 108 509 109 HOH WAT . C 3 HOH A 109 510 110 HOH WAT . C 3 HOH A 110 511 111 HOH WAT . C 3 HOH A 111 512 112 HOH WAT . C 3 HOH A 112 513 113 HOH WAT . C 3 HOH A 113 514 114 HOH WAT . C 3 HOH A 114 515 115 HOH WAT . C 3 HOH A 115 516 116 HOH WAT . C 3 HOH A 116 517 117 HOH WAT . C 3 HOH A 117 518 118 HOH WAT . C 3 HOH A 118 519 119 HOH WAT . C 3 HOH A 119 520 120 HOH WAT . C 3 HOH A 120 521 121 HOH WAT . C 3 HOH A 121 522 122 HOH WAT . C 3 HOH A 122 523 123 HOH WAT . C 3 HOH A 123 524 124 HOH WAT . C 3 HOH A 124 525 125 HOH WAT . C 3 HOH A 125 526 126 HOH WAT . C 3 HOH A 126 527 127 HOH WAT . C 3 HOH A 127 528 128 HOH WAT . C 3 HOH A 128 529 129 HOH WAT . C 3 HOH A 129 530 130 HOH WAT . C 3 HOH A 130 531 131 HOH WAT . C 3 HOH A 131 532 132 HOH WAT . C 3 HOH A 132 533 133 HOH WAT . C 3 HOH A 133 534 134 HOH WAT . C 3 HOH A 134 535 135 HOH WAT . C 3 HOH A 135 536 136 HOH WAT . C 3 HOH A 136 537 137 HOH WAT . C 3 HOH A 137 538 138 HOH WAT . C 3 HOH A 138 539 139 HOH WAT . C 3 HOH A 139 540 140 HOH WAT . C 3 HOH A 140 541 141 HOH WAT . C 3 HOH A 141 542 142 HOH WAT . C 3 HOH A 142 543 143 HOH WAT . C 3 HOH A 143 544 144 HOH WAT . C 3 HOH A 144 545 145 HOH WAT . C 3 HOH A 145 546 146 HOH WAT . C 3 HOH A 146 547 147 HOH WAT . C 3 HOH A 147 548 148 HOH WAT . C 3 HOH A 148 549 149 HOH WAT . C 3 HOH A 149 550 150 HOH WAT . C 3 HOH A 150 551 151 HOH WAT . C 3 HOH A 151 552 152 HOH WAT . C 3 HOH A 152 553 153 HOH WAT . C 3 HOH A 153 554 154 HOH WAT . C 3 HOH A 154 555 155 HOH WAT . C 3 HOH A 155 556 156 HOH WAT . C 3 HOH A 156 557 157 HOH WAT . C 3 HOH A 157 558 158 HOH WAT . C 3 HOH A 158 559 159 HOH WAT . C 3 HOH A 159 560 160 HOH WAT . C 3 HOH A 160 561 161 HOH WAT . C 3 HOH A 161 562 162 HOH WAT . C 3 HOH A 162 563 163 HOH WAT . C 3 HOH A 163 564 164 HOH WAT . C 3 HOH A 164 565 165 HOH WAT . C 3 HOH A 165 566 166 HOH WAT . C 3 HOH A 166 567 167 HOH WAT . C 3 HOH A 167 568 168 HOH WAT . C 3 HOH A 168 569 169 HOH WAT . C 3 HOH A 169 570 170 HOH WAT . C 3 HOH A 170 571 171 HOH WAT . C 3 HOH A 171 572 172 HOH WAT . C 3 HOH A 172 573 173 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GCS . . . B 2 25.601 0.397 -13.888 1 55.73 ? C1 GCS 401 A 1 HETATM 2 C C2 GCS . . . B 2 24.255 -0.349 -13.881 1 55.53 ? C2 GCS 401 A 1 HETATM 3 C C3 GCS . . . B 2 23.269 0.476 -13.04 1 55.46 ? C3 GCS 401 A 1 HETATM 4 C C4 GCS . . . B 2 23.834 0.57 -11.621 1 55.79 ? C4 GCS 401 A 1 HETATM 5 C C5 GCS . . . B 2 25.213 1.27 -11.693 1 56.35 ? C5 GCS 401 A 1 HETATM 6 C C6 GCS . . . B 2 25.814 1.359 -10.284 1 56.89 ? C6 GCS 401 A 1 HETATM 7 N N2 GCS . . . B 2 23.757 -0.469 -15.241 1 55.15 ? N2 GCS 401 A 1 HETATM 8 O O1 GCS . . . B 2 26.521 -0.339 -14.669 1 59.12 ? O1 GCS 401 A 1 HETATM 9 O O3 GCS . . . B 2 22 -0.173 -13.001 1 56.49 ? O3 GCS 401 A 1 HETATM 10 O O4 GCS . . . B 2 22.935 1.337 -10.804 1 55.61 ? O4 GCS 401 A 1 HETATM 11 O O5 GCS . . . B 2 26.12 0.512 -12.533 1 56.95 ? O5 GCS 401 A 1 HETATM 12 O O6 GCS . . . B 2 27.093 2 -10.33 1 59.07 ? O6 GCS 401 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #