data_3CO6 # _model_server_result.job_id t8ipp1j2tzACZ0lbC1rReA _model_server_result.datetime_utc '2025-03-22 09:03:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3co6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2}' # _entry.id 3CO6 # _exptl.entry_id 3CO6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CO6 _cell.length_a 65.518 _cell.length_b 76.44 _cell.length_c 102.143 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CO6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E CA CA . C CA 2 1_555 C O LEU 68 C LEU 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc2 E CA CA . C CA 2 1_555 C O HIS 71 C HIS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? metalc ? metalc3 E CA CA . C CA 2 1_555 C O PHE 74 C PHE 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc4 E CA CA . C CA 2 1_555 H O HOH . C HOH 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? hydrog WATSON-CRICK hydrog1 A N3 DT 1 A DT -4 1_555 B N1 DA 16 B DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A O4 DT 1 A DT -4 1_555 B N6 DA 16 B DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N1 DG 2 A DG -3 1_555 B N3 DC 15 B DC 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N2 DG 2 A DG -3 1_555 B O2 DC 15 B DC 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O6 DG 2 A DG -3 1_555 B N4 DC 15 B DC 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DG 3 A DG -2 1_555 B N3 DC 14 B DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N2 DG 3 A DG -2 1_555 B O2 DC 14 B DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O6 DG 3 A DG -2 1_555 B N4 DC 14 B DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DT 4 A DT -1 1_555 B N1 DA 13 B DA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O4 DT 4 A DT -1 1_555 B N6 DA 13 B DA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DT 5 A DT 1 1_555 B N1 DA 12 B DA 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 DT 5 A DT 1 1_555 B N6 DA 12 B DA 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DT 6 A DT 2 1_555 B N1 DA 11 B DA 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O4 DT 6 A DT 2 1_555 B N6 DA 11 B DA 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DG 7 A DG 3 1_555 B N3 DC 10 B DC 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N2 DG 7 A DG 3 1_555 B O2 DC 10 B DC 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O6 DG 7 A DG 3 1_555 B N4 DC 10 B DC 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 DT 8 A DT 4 1_555 B N1 DA 9 B DA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O4 DT 8 A DT 4 1_555 B N6 DA 9 B DA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N3 DT 9 A DT 5 1_555 B N1 DA 8 B DA 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O4 DT 9 A DT 5 1_555 B N6 DA 8 B DA 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 DT 10 A DT 6 1_555 B N1 DA 7 B DA 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O4 DT 10 A DT 6 1_555 B N6 DA 7 B DA 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DA 11 A DA 7 1_555 B N3 DT 6 B DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N6 DA 11 A DA 7 1_555 B O4 DT 6 B DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N3 DC 12 A DC 8 1_555 B N1 DG 5 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N4 DC 12 A DC 8 1_555 B O6 DG 5 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A O2 DC 12 A DC 8 1_555 B N2 DG 5 B DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N3 DC 13 A DC 9 1_555 B N1 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N4 DC 13 A DC 9 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A O2 DC 13 A DC 9 1_555 B N2 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A N3 DT 14 A DT 10 1_555 B N1 DA 3 B DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A O4 DT 14 A DT 10 1_555 B N6 DA 3 B DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A N3 DT 15 A DT 11 1_555 B N1 DA 2 B DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A O4 DT 15 A DT 11 1_555 B N6 DA 2 B DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N1 DG 16 A DG 12 1_555 B N3 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A N2 DG 16 A DG 12 1_555 B O2 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A O6 DG 16 A DG 12 1_555 B N4 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3CO6 _atom_sites.fract_transf_matrix[1][1] 0.015263 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00979 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CL A 1 13 1 CL CL . E 5 CA C 1 2 2 CA CA . F 6 HOH A 1 14 5 HOH HOH . F 6 HOH A 2 15 6 HOH HOH . F 6 HOH A 3 16 17 HOH HOH . F 6 HOH A 4 17 18 HOH HOH . F 6 HOH A 5 18 20 HOH HOH . F 6 HOH A 6 19 25 HOH HOH . F 6 HOH A 7 20 27 HOH HOH . F 6 HOH A 8 21 28 HOH HOH . F 6 HOH A 9 22 29 HOH HOH . F 6 HOH A 10 23 39 HOH HOH . F 6 HOH A 11 24 40 HOH HOH . F 6 HOH A 12 25 42 HOH HOH . F 6 HOH A 13 26 57 HOH HOH . F 6 HOH A 14 27 58 HOH HOH . F 6 HOH A 15 28 60 HOH HOH . F 6 HOH A 16 29 75 HOH HOH . F 6 HOH A 17 30 76 HOH HOH . F 6 HOH A 18 31 77 HOH HOH . F 6 HOH A 19 32 85 HOH HOH . F 6 HOH A 20 33 86 HOH HOH . F 6 HOH A 21 34 87 HOH HOH . F 6 HOH A 22 35 98 HOH HOH . F 6 HOH A 23 36 103 HOH HOH . F 6 HOH A 24 37 104 HOH HOH . F 6 HOH A 25 38 105 HOH HOH . F 6 HOH A 26 39 110 HOH HOH . F 6 HOH A 27 40 113 HOH HOH . F 6 HOH A 28 41 115 HOH HOH . F 6 HOH A 29 42 118 HOH HOH . F 6 HOH A 30 43 119 HOH HOH . F 6 HOH A 31 44 123 HOH HOH . F 6 HOH A 32 45 124 HOH HOH . F 6 HOH A 33 46 139 HOH HOH . F 6 HOH A 34 47 143 HOH HOH . F 6 HOH A 35 48 148 HOH HOH . F 6 HOH A 36 49 149 HOH HOH . F 6 HOH A 37 50 156 HOH HOH . F 6 HOH A 38 51 164 HOH HOH . F 6 HOH A 39 52 165 HOH HOH . F 6 HOH A 40 53 169 HOH HOH . F 6 HOH A 41 54 171 HOH HOH . F 6 HOH A 42 55 174 HOH HOH . F 6 HOH A 43 56 177 HOH HOH . F 6 HOH A 44 57 178 HOH HOH . F 6 HOH A 45 58 185 HOH HOH . G 6 HOH B 1 29 1 HOH HOH . G 6 HOH B 2 30 7 HOH HOH . G 6 HOH B 3 31 9 HOH HOH . G 6 HOH B 4 32 15 HOH HOH . G 6 HOH B 5 33 16 HOH HOH . G 6 HOH B 6 34 26 HOH HOH . G 6 HOH B 7 35 30 HOH HOH . G 6 HOH B 8 36 37 HOH HOH . G 6 HOH B 9 37 38 HOH HOH . G 6 HOH B 10 38 41 HOH HOH . G 6 HOH B 11 39 49 HOH HOH . G 6 HOH B 12 40 55 HOH HOH . G 6 HOH B 13 41 59 HOH HOH . G 6 HOH B 14 42 61 HOH HOH . G 6 HOH B 15 43 62 HOH HOH . G 6 HOH B 16 44 68 HOH HOH . G 6 HOH B 17 45 69 HOH HOH . G 6 HOH B 18 46 73 HOH HOH . G 6 HOH B 19 47 90 HOH HOH . G 6 HOH B 20 48 92 HOH HOH . G 6 HOH B 21 49 93 HOH HOH . G 6 HOH B 22 50 101 HOH HOH . G 6 HOH B 23 51 102 HOH HOH . G 6 HOH B 24 52 106 HOH HOH . G 6 HOH B 25 53 107 HOH HOH . G 6 HOH B 26 54 109 HOH HOH . G 6 HOH B 27 55 111 HOH HOH . G 6 HOH B 28 56 112 HOH HOH . G 6 HOH B 29 57 114 HOH HOH . G 6 HOH B 30 58 120 HOH HOH . G 6 HOH B 31 59 121 HOH HOH . G 6 HOH B 32 60 122 HOH HOH . G 6 HOH B 33 61 130 HOH HOH . G 6 HOH B 34 62 138 HOH HOH . G 6 HOH B 35 63 146 HOH HOH . G 6 HOH B 36 64 166 HOH HOH . G 6 HOH B 37 65 172 HOH HOH . G 6 HOH B 38 66 175 HOH HOH . G 6 HOH B 39 67 176 HOH HOH . G 6 HOH B 40 68 184 HOH HOH . H 6 HOH C 1 250 2 HOH HOH . H 6 HOH C 2 251 3 HOH HOH . H 6 HOH C 3 252 4 HOH HOH . H 6 HOH C 4 253 8 HOH HOH . H 6 HOH C 5 254 10 HOH HOH . H 6 HOH C 6 255 11 HOH HOH . H 6 HOH C 7 256 12 HOH HOH . H 6 HOH C 8 257 13 HOH HOH . H 6 HOH C 9 258 14 HOH HOH . H 6 HOH C 10 259 19 HOH HOH . H 6 HOH C 11 260 21 HOH HOH . H 6 HOH C 12 261 22 HOH HOH . H 6 HOH C 13 262 23 HOH HOH . H 6 HOH C 14 263 24 HOH HOH . H 6 HOH C 15 264 31 HOH HOH . H 6 HOH C 16 265 32 HOH HOH . H 6 HOH C 17 266 33 HOH HOH . H 6 HOH C 18 267 34 HOH HOH . H 6 HOH C 19 268 35 HOH HOH . H 6 HOH C 20 269 36 HOH HOH . H 6 HOH C 21 270 43 HOH HOH . H 6 HOH C 22 271 44 HOH HOH . H 6 HOH C 23 272 45 HOH HOH . H 6 HOH C 24 273 46 HOH HOH . H 6 HOH C 25 274 47 HOH HOH . H 6 HOH C 26 275 48 HOH HOH . H 6 HOH C 27 276 50 HOH HOH . H 6 HOH C 28 277 51 HOH HOH . H 6 HOH C 29 278 52 HOH HOH . H 6 HOH C 30 279 53 HOH HOH . H 6 HOH C 31 280 54 HOH HOH . H 6 HOH C 32 281 56 HOH HOH . H 6 HOH C 33 282 64 HOH HOH . H 6 HOH C 34 283 65 HOH HOH . H 6 HOH C 35 284 66 HOH HOH . H 6 HOH C 36 285 67 HOH HOH . H 6 HOH C 37 286 74 HOH HOH . H 6 HOH C 38 287 78 HOH HOH . H 6 HOH C 39 288 79 HOH HOH . H 6 HOH C 40 289 80 HOH HOH . H 6 HOH C 41 290 81 HOH HOH . H 6 HOH C 42 291 82 HOH HOH . H 6 HOH C 43 292 83 HOH HOH . H 6 HOH C 44 293 88 HOH HOH . H 6 HOH C 45 294 94 HOH HOH . H 6 HOH C 46 295 95 HOH HOH . H 6 HOH C 47 296 96 HOH HOH . H 6 HOH C 48 297 97 HOH HOH . H 6 HOH C 49 298 116 HOH HOH . H 6 HOH C 50 299 125 HOH HOH . H 6 HOH C 51 300 126 HOH HOH . H 6 HOH C 52 301 128 HOH HOH . H 6 HOH C 53 302 129 HOH HOH . H 6 HOH C 54 303 131 HOH HOH . H 6 HOH C 55 304 132 HOH HOH . H 6 HOH C 56 305 133 HOH HOH . H 6 HOH C 57 306 134 HOH HOH . H 6 HOH C 58 307 135 HOH HOH . H 6 HOH C 59 308 136 HOH HOH . H 6 HOH C 60 309 137 HOH HOH . H 6 HOH C 61 310 140 HOH HOH . H 6 HOH C 62 311 141 HOH HOH . H 6 HOH C 63 312 142 HOH HOH . H 6 HOH C 64 313 145 HOH HOH . H 6 HOH C 65 314 153 HOH HOH . H 6 HOH C 66 315 154 HOH HOH . H 6 HOH C 67 316 155 HOH HOH . H 6 HOH C 68 317 157 HOH HOH . H 6 HOH C 69 318 158 HOH HOH . H 6 HOH C 70 319 163 HOH HOH . H 6 HOH C 71 320 167 HOH HOH . H 6 HOH C 72 321 168 HOH HOH . H 6 HOH C 73 322 179 HOH HOH . H 6 HOH C 74 323 180 HOH HOH . H 6 HOH C 75 324 182 HOH HOH . H 6 HOH C 76 325 186 HOH HOH . H 6 HOH C 77 326 187 HOH HOH . H 6 HOH C 78 327 188 HOH HOH . H 6 HOH C 79 328 189 HOH HOH . H 6 HOH C 80 329 190 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 11.195 _atom_site.Cartn_y -31.379 _atom_site.Cartn_z 18.581 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 59.35 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 2 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 99 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #