data_3COC # _model_server_result.job_id diVYxefL7nMGbI1KCSOyXg _model_server_result.datetime_utc '2024-10-31 07:31:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3coc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 3COC # _exptl.entry_id 3COC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.72 _cell.angle_gamma 90 _cell.entry_id 3COC _cell.length_a 45.362 _cell.length_b 108.966 _cell.length_c 56.432 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3COC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 216 A LYS 216 1_555 C C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 B NZ LYS 216 B LYS 216 1_555 D C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 243 n n C1 C6 RET sing 244 n n C1 C16 RET sing 245 n n C1 C17 RET sing 246 n n C2 C3 RET sing 247 n n C2 H21 RET sing 248 n n C2 H22 RET sing 249 n n C3 C4 RET sing 250 n n C3 H31 RET sing 251 n n C3 H32 RET sing 252 n n C4 C5 RET sing 253 n n C4 H41 RET sing 254 n n C4 H42 RET sing 255 n n C5 C6 RET doub 256 n n C5 C18 RET sing 257 n n C6 C7 RET sing 258 n n C7 C8 RET doub 259 e n C7 H7 RET sing 260 n n C8 C9 RET sing 261 n n C8 H8 RET sing 262 n n C9 C10 RET doub 263 e n C9 C19 RET sing 264 n n C10 C11 RET sing 265 n n C10 H10 RET sing 266 n n C11 C12 RET doub 267 e n C11 H11 RET sing 268 n n C12 C13 RET sing 269 n n C12 H12 RET sing 270 n n C13 C14 RET doub 271 e n C13 C20 RET sing 272 n n C14 C15 RET sing 273 n n C14 H14 RET sing 274 n n C15 O1 RET doub 275 n n C15 H15 RET sing 276 n n C16 H161 RET sing 277 n n C16 H162 RET sing 278 n n C16 H163 RET sing 279 n n C17 H171 RET sing 280 n n C17 H172 RET sing 281 n n C17 H173 RET sing 282 n n C18 H181 RET sing 283 n n C18 H182 RET sing 284 n n C18 H183 RET sing 285 n n C19 H191 RET sing 286 n n C19 H192 RET sing 287 n n C19 H193 RET sing 288 n n C20 H201 RET sing 289 n n C20 H202 RET sing 290 n n C20 H203 RET sing 291 n n # _atom_sites.entry_id 3COC _atom_sites.fract_transf_matrix[1][1] 0.022045 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009686 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009177 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019356 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RET A 1 301 301 RET RET . D 2 RET B 1 301 301 RET RET . E 3 HOH A 1 302 1 HOH TIP . E 3 HOH A 2 303 3 HOH TIP . E 3 HOH A 3 304 10 HOH TIP . E 3 HOH A 4 305 11 HOH TIP . E 3 HOH A 5 306 12 HOH TIP . E 3 HOH A 6 307 13 HOH TIP . E 3 HOH A 7 308 15 HOH TIP . E 3 HOH A 8 309 17 HOH TIP . E 3 HOH A 9 310 19 HOH TIP . E 3 HOH A 10 311 23 HOH TIP . E 3 HOH A 11 312 26 HOH TIP . E 3 HOH A 12 313 28 HOH TIP . E 3 HOH A 13 314 29 HOH TIP . E 3 HOH A 14 315 31 HOH TIP . E 3 HOH A 15 316 34 HOH TIP . E 3 HOH A 16 317 35 HOH TIP . E 3 HOH A 17 318 38 HOH TIP . E 3 HOH A 18 319 41 HOH TIP . E 3 HOH A 19 320 43 HOH TIP . E 3 HOH A 20 321 46 HOH TIP . E 3 HOH A 21 322 47 HOH TIP . E 3 HOH A 22 323 51 HOH TIP . E 3 HOH A 23 324 52 HOH TIP . E 3 HOH A 24 325 53 HOH TIP . E 3 HOH A 25 326 54 HOH TIP . E 3 HOH A 26 327 55 HOH TIP . E 3 HOH A 27 329 58 HOH TIP . E 3 HOH A 28 330 61 HOH TIP . E 3 HOH A 29 331 68 HOH TIP . E 3 HOH A 30 332 69 HOH TIP . E 3 HOH A 31 333 72 HOH TIP . E 3 HOH A 32 334 73 HOH TIP . E 3 HOH A 33 335 75 HOH TIP . E 3 HOH A 34 336 76 HOH TIP . E 3 HOH A 35 338 79 HOH TIP . E 3 HOH A 36 339 80 HOH TIP . E 3 HOH A 37 340 81 HOH TIP . E 3 HOH A 38 341 84 HOH TIP . E 3 HOH A 39 342 94 HOH TIP . E 3 HOH A 40 343 95 HOH TIP . E 3 HOH A 41 344 96 HOH TIP . E 3 HOH A 42 345 97 HOH TIP . E 3 HOH A 43 347 99 HOH TIP . E 3 HOH A 44 348 100 HOH TIP . E 3 HOH A 45 349 102 HOH TIP . E 3 HOH A 46 350 103 HOH TIP . E 3 HOH A 47 351 106 HOH TIP . E 3 HOH A 48 352 107 HOH TIP . E 3 HOH A 49 353 108 HOH TIP . E 3 HOH A 50 354 109 HOH TIP . E 3 HOH A 51 355 112 HOH TIP . E 3 HOH A 52 356 113 HOH TIP . E 3 HOH A 53 357 115 HOH TIP . E 3 HOH A 54 358 118 HOH TIP . E 3 HOH A 55 359 119 HOH TIP . E 3 HOH A 56 360 122 HOH TIP . E 3 HOH A 57 361 123 HOH TIP . E 3 HOH A 58 362 124 HOH TIP . E 3 HOH A 59 363 125 HOH TIP . E 3 HOH A 60 364 129 HOH TIP . E 3 HOH A 61 365 130 HOH TIP . E 3 HOH A 62 367 133 HOH TIP . F 3 HOH B 1 328 57 HOH TIP . F 3 HOH B 2 329 78 HOH TIP . F 3 HOH B 3 330 98 HOH TIP . F 3 HOH B 4 331 132 HOH TIP . F 3 HOH B 5 332 2 HOH TIP . F 3 HOH B 6 333 4 HOH TIP . F 3 HOH B 7 334 5 HOH TIP . F 3 HOH B 8 335 6 HOH TIP . F 3 HOH B 9 336 7 HOH TIP . F 3 HOH B 10 337 8 HOH TIP . F 3 HOH B 11 338 9 HOH TIP . F 3 HOH B 12 339 14 HOH TIP . F 3 HOH B 13 340 16 HOH TIP . F 3 HOH B 14 341 18 HOH TIP . F 3 HOH B 15 342 20 HOH TIP . F 3 HOH B 16 343 21 HOH TIP . F 3 HOH B 17 344 22 HOH TIP . F 3 HOH B 18 345 24 HOH TIP . F 3 HOH B 19 346 25 HOH TIP . F 3 HOH B 20 347 27 HOH TIP . F 3 HOH B 21 348 30 HOH TIP . F 3 HOH B 22 349 32 HOH TIP . F 3 HOH B 23 350 33 HOH TIP . F 3 HOH B 24 351 36 HOH TIP . F 3 HOH B 25 352 37 HOH TIP . F 3 HOH B 26 353 39 HOH TIP . F 3 HOH B 27 354 40 HOH TIP . F 3 HOH B 28 355 42 HOH TIP . F 3 HOH B 29 356 44 HOH TIP . F 3 HOH B 30 357 45 HOH TIP . F 3 HOH B 31 358 48 HOH TIP . F 3 HOH B 32 359 49 HOH TIP . F 3 HOH B 33 360 50 HOH TIP . F 3 HOH B 34 361 56 HOH TIP . F 3 HOH B 35 362 59 HOH TIP . F 3 HOH B 36 363 60 HOH TIP . F 3 HOH B 37 364 62 HOH TIP . F 3 HOH B 38 365 63 HOH TIP . F 3 HOH B 39 366 64 HOH TIP . F 3 HOH B 40 367 65 HOH TIP . F 3 HOH B 41 368 66 HOH TIP . F 3 HOH B 42 369 67 HOH TIP . F 3 HOH B 43 370 70 HOH TIP . F 3 HOH B 44 371 71 HOH TIP . F 3 HOH B 45 372 74 HOH TIP . F 3 HOH B 46 373 77 HOH TIP . F 3 HOH B 47 374 82 HOH TIP . F 3 HOH B 48 375 83 HOH TIP . F 3 HOH B 49 376 85 HOH TIP . F 3 HOH B 50 377 86 HOH TIP . F 3 HOH B 51 378 87 HOH TIP . F 3 HOH B 52 379 88 HOH TIP . F 3 HOH B 53 380 89 HOH TIP . F 3 HOH B 54 381 90 HOH TIP . F 3 HOH B 55 382 91 HOH TIP . F 3 HOH B 56 383 92 HOH TIP . F 3 HOH B 57 384 93 HOH TIP . F 3 HOH B 58 385 101 HOH TIP . F 3 HOH B 59 386 104 HOH TIP . F 3 HOH B 60 387 105 HOH TIP . F 3 HOH B 61 388 110 HOH TIP . F 3 HOH B 62 389 111 HOH TIP . F 3 HOH B 63 390 114 HOH TIP . F 3 HOH B 64 391 116 HOH TIP . F 3 HOH B 65 392 117 HOH TIP . F 3 HOH B 66 393 120 HOH TIP . F 3 HOH B 67 394 121 HOH TIP . F 3 HOH B 68 395 126 HOH TIP . F 3 HOH B 69 396 127 HOH TIP . F 3 HOH B 70 397 128 HOH TIP . F 3 HOH B 71 398 131 HOH TIP . F 3 HOH B 72 399 134 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . C 2 41.32 54.884 2.19 1 11 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . C 2 42.13 56.106 1.683 1 11.46 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . C 2 42.687 56.063 0.302 1 11.34 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . C 2 43.246 54.706 -0.146 1 12.09 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . C 2 42.466 53.444 0.306 1 11.29 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . C 2 41.567 53.517 1.39 1 11.61 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . C 2 40.889 52.218 1.704 1 13.7 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . C 2 39.964 51.85 2.646 1 15.1 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . C 2 39.371 50.542 2.86 1 15.79 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . C 2 38.483 50.567 3.898 1 16.26 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . C 2 37.74 49.37 4.318 1 18.14 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . C 2 36.929 49.662 5.375 1 19.11 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . C 2 36.059 48.705 6.044 1 19.99 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . C 2 35.384 49.333 7.062 1 20.49 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . C 2 34.433 48.704 7.943 1 19.44 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . C 2 41.713 54.729 3.704 1 11.07 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . C 2 39.831 55.416 2.067 1 10.36 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . C 2 42.864 52.297 -0.585 1 9.66 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . C 2 39.717 49.333 2.018 1 14.78 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . C 2 35.948 47.259 5.64 1 20.21 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #