data_3COC
#
_model_server_result.job_id            e6AtX8shY-gyo_KRaYHAbw 
_model_server_result.datetime_utc      '2024-12-26 12:04:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3coc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    3COC 
#
_exptl.entry_id    3COC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.72 
_cell.angle_gamma         90 
_cell.entry_id            3COC 
_cell.length_a            45.362 
_cell.length_b            108.966 
_cell.length_c            56.432 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3COC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 216 A LYS 216 1_555 C C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 B NZ LYS 216 B LYS 216 1_555 D C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 243 n n 
C1 C6 RET sing 244 n n 
C1 C16 RET sing 245 n n 
C1 C17 RET sing 246 n n 
C2 C3 RET sing 247 n n 
C2 H21 RET sing 248 n n 
C2 H22 RET sing 249 n n 
C3 C4 RET sing 250 n n 
C3 H31 RET sing 251 n n 
C3 H32 RET sing 252 n n 
C4 C5 RET sing 253 n n 
C4 H41 RET sing 254 n n 
C4 H42 RET sing 255 n n 
C5 C6 RET doub 256 n n 
C5 C18 RET sing 257 n n 
C6 C7 RET sing 258 n n 
C7 C8 RET doub 259 e n 
C7 H7 RET sing 260 n n 
C8 C9 RET sing 261 n n 
C8 H8 RET sing 262 n n 
C9 C10 RET doub 263 e n 
C9 C19 RET sing 264 n n 
C10 C11 RET sing 265 n n 
C10 H10 RET sing 266 n n 
C11 C12 RET doub 267 e n 
C11 H11 RET sing 268 n n 
C12 C13 RET sing 269 n n 
C12 H12 RET sing 270 n n 
C13 C14 RET doub 271 e n 
C13 C20 RET sing 272 n n 
C14 C15 RET sing 273 n n 
C14 H14 RET sing 274 n n 
C15 O1 RET doub 275 n n 
C15 H15 RET sing 276 n n 
C16 H161 RET sing 277 n n 
C16 H162 RET sing 278 n n 
C16 H163 RET sing 279 n n 
C17 H171 RET sing 280 n n 
C17 H172 RET sing 281 n n 
C17 H173 RET sing 282 n n 
C18 H181 RET sing 283 n n 
C18 H182 RET sing 284 n n 
C18 H183 RET sing 285 n n 
C19 H191 RET sing 286 n n 
C19 H192 RET sing 287 n n 
C19 H193 RET sing 288 n n 
C20 H201 RET sing 289 n n 
C20 H202 RET sing 290 n n 
C20 H203 RET sing 291 n n 
#
_atom_sites.entry_id                     3COC 
_atom_sites.fract_transf_matrix[1][1]    0.022045 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.009686 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009177 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019356 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 RET A 1 301 301 RET RET . 
D 2 RET B 1 301 301 RET RET . 
E 3 HOH A 1 302 1 HOH TIP . 
E 3 HOH A 2 303 3 HOH TIP . 
E 3 HOH A 3 304 10 HOH TIP . 
E 3 HOH A 4 305 11 HOH TIP . 
E 3 HOH A 5 306 12 HOH TIP . 
E 3 HOH A 6 307 13 HOH TIP . 
E 3 HOH A 7 308 15 HOH TIP . 
E 3 HOH A 8 309 17 HOH TIP . 
E 3 HOH A 9 310 19 HOH TIP . 
E 3 HOH A 10 311 23 HOH TIP . 
E 3 HOH A 11 312 26 HOH TIP . 
E 3 HOH A 12 313 28 HOH TIP . 
E 3 HOH A 13 314 29 HOH TIP . 
E 3 HOH A 14 315 31 HOH TIP . 
E 3 HOH A 15 316 34 HOH TIP . 
E 3 HOH A 16 317 35 HOH TIP . 
E 3 HOH A 17 318 38 HOH TIP . 
E 3 HOH A 18 319 41 HOH TIP . 
E 3 HOH A 19 320 43 HOH TIP . 
E 3 HOH A 20 321 46 HOH TIP . 
E 3 HOH A 21 322 47 HOH TIP . 
E 3 HOH A 22 323 51 HOH TIP . 
E 3 HOH A 23 324 52 HOH TIP . 
E 3 HOH A 24 325 53 HOH TIP . 
E 3 HOH A 25 326 54 HOH TIP . 
E 3 HOH A 26 327 55 HOH TIP . 
E 3 HOH A 27 329 58 HOH TIP . 
E 3 HOH A 28 330 61 HOH TIP . 
E 3 HOH A 29 331 68 HOH TIP . 
E 3 HOH A 30 332 69 HOH TIP . 
E 3 HOH A 31 333 72 HOH TIP . 
E 3 HOH A 32 334 73 HOH TIP . 
E 3 HOH A 33 335 75 HOH TIP . 
E 3 HOH A 34 336 76 HOH TIP . 
E 3 HOH A 35 338 79 HOH TIP . 
E 3 HOH A 36 339 80 HOH TIP . 
E 3 HOH A 37 340 81 HOH TIP . 
E 3 HOH A 38 341 84 HOH TIP . 
E 3 HOH A 39 342 94 HOH TIP . 
E 3 HOH A 40 343 95 HOH TIP . 
E 3 HOH A 41 344 96 HOH TIP . 
E 3 HOH A 42 345 97 HOH TIP . 
E 3 HOH A 43 347 99 HOH TIP . 
E 3 HOH A 44 348 100 HOH TIP . 
E 3 HOH A 45 349 102 HOH TIP . 
E 3 HOH A 46 350 103 HOH TIP . 
E 3 HOH A 47 351 106 HOH TIP . 
E 3 HOH A 48 352 107 HOH TIP . 
E 3 HOH A 49 353 108 HOH TIP . 
E 3 HOH A 50 354 109 HOH TIP . 
E 3 HOH A 51 355 112 HOH TIP . 
E 3 HOH A 52 356 113 HOH TIP . 
E 3 HOH A 53 357 115 HOH TIP . 
E 3 HOH A 54 358 118 HOH TIP . 
E 3 HOH A 55 359 119 HOH TIP . 
E 3 HOH A 56 360 122 HOH TIP . 
E 3 HOH A 57 361 123 HOH TIP . 
E 3 HOH A 58 362 124 HOH TIP . 
E 3 HOH A 59 363 125 HOH TIP . 
E 3 HOH A 60 364 129 HOH TIP . 
E 3 HOH A 61 365 130 HOH TIP . 
E 3 HOH A 62 367 133 HOH TIP . 
F 3 HOH B 1 328 57 HOH TIP . 
F 3 HOH B 2 329 78 HOH TIP . 
F 3 HOH B 3 330 98 HOH TIP . 
F 3 HOH B 4 331 132 HOH TIP . 
F 3 HOH B 5 332 2 HOH TIP . 
F 3 HOH B 6 333 4 HOH TIP . 
F 3 HOH B 7 334 5 HOH TIP . 
F 3 HOH B 8 335 6 HOH TIP . 
F 3 HOH B 9 336 7 HOH TIP . 
F 3 HOH B 10 337 8 HOH TIP . 
F 3 HOH B 11 338 9 HOH TIP . 
F 3 HOH B 12 339 14 HOH TIP . 
F 3 HOH B 13 340 16 HOH TIP . 
F 3 HOH B 14 341 18 HOH TIP . 
F 3 HOH B 15 342 20 HOH TIP . 
F 3 HOH B 16 343 21 HOH TIP . 
F 3 HOH B 17 344 22 HOH TIP . 
F 3 HOH B 18 345 24 HOH TIP . 
F 3 HOH B 19 346 25 HOH TIP . 
F 3 HOH B 20 347 27 HOH TIP . 
F 3 HOH B 21 348 30 HOH TIP . 
F 3 HOH B 22 349 32 HOH TIP . 
F 3 HOH B 23 350 33 HOH TIP . 
F 3 HOH B 24 351 36 HOH TIP . 
F 3 HOH B 25 352 37 HOH TIP . 
F 3 HOH B 26 353 39 HOH TIP . 
F 3 HOH B 27 354 40 HOH TIP . 
F 3 HOH B 28 355 42 HOH TIP . 
F 3 HOH B 29 356 44 HOH TIP . 
F 3 HOH B 30 357 45 HOH TIP . 
F 3 HOH B 31 358 48 HOH TIP . 
F 3 HOH B 32 359 49 HOH TIP . 
F 3 HOH B 33 360 50 HOH TIP . 
F 3 HOH B 34 361 56 HOH TIP . 
F 3 HOH B 35 362 59 HOH TIP . 
F 3 HOH B 36 363 60 HOH TIP . 
F 3 HOH B 37 364 62 HOH TIP . 
F 3 HOH B 38 365 63 HOH TIP . 
F 3 HOH B 39 366 64 HOH TIP . 
F 3 HOH B 40 367 65 HOH TIP . 
F 3 HOH B 41 368 66 HOH TIP . 
F 3 HOH B 42 369 67 HOH TIP . 
F 3 HOH B 43 370 70 HOH TIP . 
F 3 HOH B 44 371 71 HOH TIP . 
F 3 HOH B 45 372 74 HOH TIP . 
F 3 HOH B 46 373 77 HOH TIP . 
F 3 HOH B 47 374 82 HOH TIP . 
F 3 HOH B 48 375 83 HOH TIP . 
F 3 HOH B 49 376 85 HOH TIP . 
F 3 HOH B 50 377 86 HOH TIP . 
F 3 HOH B 51 378 87 HOH TIP . 
F 3 HOH B 52 379 88 HOH TIP . 
F 3 HOH B 53 380 89 HOH TIP . 
F 3 HOH B 54 381 90 HOH TIP . 
F 3 HOH B 55 382 91 HOH TIP . 
F 3 HOH B 56 383 92 HOH TIP . 
F 3 HOH B 57 384 93 HOH TIP . 
F 3 HOH B 58 385 101 HOH TIP . 
F 3 HOH B 59 386 104 HOH TIP . 
F 3 HOH B 60 387 105 HOH TIP . 
F 3 HOH B 61 388 110 HOH TIP . 
F 3 HOH B 62 389 111 HOH TIP . 
F 3 HOH B 63 390 114 HOH TIP . 
F 3 HOH B 64 391 116 HOH TIP . 
F 3 HOH B 65 392 117 HOH TIP . 
F 3 HOH B 66 393 120 HOH TIP . 
F 3 HOH B 67 394 121 HOH TIP . 
F 3 HOH B 68 395 126 HOH TIP . 
F 3 HOH B 69 396 127 HOH TIP . 
F 3 HOH B 70 397 128 HOH TIP . 
F 3 HOH B 71 398 131 HOH TIP . 
F 3 HOH B 72 399 134 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . D 2 18.812 48.754 32.775 1 18.91 ? C1 RET 301 B 1 
HETATM 2 C C2 RET . . . D 2 19.647 47.546 33.283 1 19.66 ? C2 RET 301 B 1 
HETATM 3 C C3 RET . . . D 2 20.201 47.599 34.663 1 19.87 ? C3 RET 301 B 1 
HETATM 4 C C4 RET . . . D 2 20.74 48.96 35.109 1 20.76 ? C4 RET 301 B 1 
HETATM 5 C C5 RET . . . D 2 19.941 50.212 34.657 1 19.23 ? C5 RET 301 B 1 
HETATM 6 C C6 RET . . . D 2 19.043 50.126 33.575 1 19.32 ? C6 RET 301 B 1 
HETATM 7 C C7 RET . . . D 2 18.342 51.419 33.263 1 19.58 ? C7 RET 301 B 1 
HETATM 8 C C8 RET . . . D 2 17.413 51.773 32.32 1 18.22 ? C8 RET 301 B 1 
HETATM 9 C C9 RET . . . D 2 16.797 53.07 32.108 1 18.42 ? C9 RET 301 B 1 
HETATM 10 C C10 RET . . . D 2 15.914 53.032 31.067 1 18.21 ? C10 RET 301 B 1 
HETATM 11 C C11 RET . . . D 2 15.155 54.216 30.646 1 17.84 ? C11 RET 301 B 1 
HETATM 12 C C12 RET . . . D 2 14.343 53.911 29.591 1 17.67 ? C12 RET 301 B 1 
HETATM 13 C C13 RET . . . D 2 13.453 54.853 28.924 1 17.56 ? C13 RET 301 B 1 
HETATM 14 C C14 RET . . . D 2 12.785 54.213 27.911 1 16.4 ? C14 RET 301 B 1 
HETATM 15 C C15 RET . . . D 2 11.823 54.821 27.033 1 14.99 ? C15 RET 301 B 1 
HETATM 16 C C16 RET . . . D 2 19.195 48.914 31.257 1 19.46 ? C16 RET 301 B 1 
HETATM 17 C C17 RET . . . D 2 17.329 48.193 32.905 1 18.69 ? C17 RET 301 B 1 
HETATM 18 C C18 RET . . . D 2 20.323 51.368 35.546 1 19.13 ? C18 RET 301 B 1 
HETATM 19 C C19 RET . . . D 2 17.117 54.285 32.95 1 17.8 ? C19 RET 301 B 1 
HETATM 20 C C20 RET . . . D 2 13.317 56.297 29.322 1 17.16 ? C20 RET 301 B 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
#