data_3COK # _model_server_result.job_id SB-mC9ZnNnSAmAPO1ls9EA _model_server_result.datetime_utc '2024-10-13 09:11:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cok # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 3COK # _exptl.entry_id 3COK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3COK _cell.length_a 84.516 _cell.length_b 102.151 _cell.length_c 63.058 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3COK _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 3COK _atom_sites.fract_transf_matrix[1][1] 0.011832 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015858 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 277 4 SO4 SO4 . D 2 SO4 A 1 278 5 SO4 SO4 . E 3 ANP A 1 301 1 ANP ANP . F 2 SO4 B 1 302 3 SO4 SO4 . G 2 SO4 B 1 303 6 SO4 SO4 . H 3 ANP B 1 301 2 ANP ANP . I 4 HOH A 1 302 9 HOH HOH . I 4 HOH A 2 303 11 HOH HOH . I 4 HOH A 3 304 12 HOH HOH . I 4 HOH A 4 305 13 HOH HOH . I 4 HOH A 5 306 14 HOH HOH . I 4 HOH A 6 307 15 HOH HOH . I 4 HOH A 7 308 16 HOH HOH . I 4 HOH A 8 309 20 HOH HOH . I 4 HOH A 9 310 22 HOH HOH . I 4 HOH A 10 311 24 HOH HOH . I 4 HOH A 11 312 26 HOH HOH . I 4 HOH A 12 313 27 HOH HOH . I 4 HOH A 13 314 30 HOH HOH . I 4 HOH A 14 315 31 HOH HOH . I 4 HOH A 15 316 32 HOH HOH . I 4 HOH A 16 317 34 HOH HOH . I 4 HOH A 17 318 35 HOH HOH . I 4 HOH A 18 319 36 HOH HOH . I 4 HOH A 19 320 37 HOH HOH . I 4 HOH A 20 321 38 HOH HOH . I 4 HOH A 21 322 44 HOH HOH . I 4 HOH A 22 323 45 HOH HOH . I 4 HOH A 23 324 46 HOH HOH . I 4 HOH A 24 325 47 HOH HOH . I 4 HOH A 25 326 49 HOH HOH . I 4 HOH A 26 327 50 HOH HOH . I 4 HOH A 27 328 51 HOH HOH . I 4 HOH A 28 329 53 HOH HOH . I 4 HOH A 29 330 62 HOH HOH . I 4 HOH A 30 331 63 HOH HOH . I 4 HOH A 31 332 65 HOH HOH . I 4 HOH A 32 333 67 HOH HOH . I 4 HOH A 33 334 69 HOH HOH . I 4 HOH A 34 335 74 HOH HOH . I 4 HOH A 35 336 75 HOH HOH . I 4 HOH A 36 337 77 HOH HOH . I 4 HOH A 37 338 78 HOH HOH . I 4 HOH A 38 339 79 HOH HOH . I 4 HOH A 39 340 82 HOH HOH . I 4 HOH A 40 341 85 HOH HOH . I 4 HOH A 41 342 88 HOH HOH . I 4 HOH A 42 343 90 HOH HOH . I 4 HOH A 43 344 95 HOH HOH . I 4 HOH A 44 345 97 HOH HOH . J 4 HOH B 1 304 7 HOH HOH . J 4 HOH B 2 305 8 HOH HOH . J 4 HOH B 3 306 10 HOH HOH . J 4 HOH B 4 307 17 HOH HOH . J 4 HOH B 5 308 18 HOH HOH . J 4 HOH B 6 309 19 HOH HOH . J 4 HOH B 7 310 21 HOH HOH . J 4 HOH B 8 311 23 HOH HOH . J 4 HOH B 9 312 25 HOH HOH . J 4 HOH B 10 313 28 HOH HOH . J 4 HOH B 11 314 29 HOH HOH . J 4 HOH B 12 315 33 HOH HOH . J 4 HOH B 13 316 39 HOH HOH . J 4 HOH B 14 317 40 HOH HOH . J 4 HOH B 15 318 41 HOH HOH . J 4 HOH B 16 319 42 HOH HOH . J 4 HOH B 17 320 43 HOH HOH . J 4 HOH B 18 321 48 HOH HOH . J 4 HOH B 19 322 52 HOH HOH . J 4 HOH B 20 323 54 HOH HOH . J 4 HOH B 21 324 55 HOH HOH . J 4 HOH B 22 325 56 HOH HOH . J 4 HOH B 23 326 57 HOH HOH . J 4 HOH B 24 327 58 HOH HOH . J 4 HOH B 25 328 59 HOH HOH . J 4 HOH B 26 329 60 HOH HOH . J 4 HOH B 27 330 61 HOH HOH . J 4 HOH B 28 331 64 HOH HOH . J 4 HOH B 29 332 66 HOH HOH . J 4 HOH B 30 333 68 HOH HOH . J 4 HOH B 31 334 70 HOH HOH . J 4 HOH B 32 335 71 HOH HOH . J 4 HOH B 33 336 72 HOH HOH . J 4 HOH B 34 337 73 HOH HOH . J 4 HOH B 35 338 76 HOH HOH . J 4 HOH B 36 339 80 HOH HOH . J 4 HOH B 37 340 81 HOH HOH . J 4 HOH B 38 341 83 HOH HOH . J 4 HOH B 39 342 84 HOH HOH . J 4 HOH B 40 343 86 HOH HOH . J 4 HOH B 41 344 87 HOH HOH . J 4 HOH B 42 345 89 HOH HOH . J 4 HOH B 43 346 91 HOH HOH . J 4 HOH B 44 347 92 HOH HOH . J 4 HOH B 45 348 93 HOH HOH . J 4 HOH B 46 349 94 HOH HOH . J 4 HOH B 47 350 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . H 3 8.319 66.355 -4.222 1 69.82 ? PG ANP 301 B 1 HETATM 2 O O1G ANP . . . H 3 9.609 66.876 -5.016 1 69.43 ? O1G ANP 301 B 1 HETATM 3 O O2G ANP . . . H 3 7.025 66.683 -5.087 1 69.54 ? O2G ANP 301 B 1 HETATM 4 O O3G ANP . . . H 3 8.234 67.145 -2.827 1 69.35 ? O3G ANP 301 B 1 HETATM 5 P PB ANP . . . H 3 9 64.018 -2.403 1 61.26 ? PB ANP 301 B 1 HETATM 6 O O1B ANP . . . H 3 10.563 64.331 -2.363 1 60.45 ? O1B ANP 301 B 1 HETATM 7 O O2B ANP . . . H 3 8.225 64.709 -1.199 1 59.42 ? O2B ANP 301 B 1 HETATM 8 N N3B ANP . . . H 3 8.378 64.618 -3.932 1 64.75 ? N3B ANP 301 B 1 HETATM 9 P PA ANP . . . H 3 9.729 61.574 -1.265 1 50.67 ? PA ANP 301 B 1 HETATM 10 O O1A ANP . . . H 3 10.807 60.822 -2.16 1 52.29 ? O1A ANP 301 B 1 HETATM 11 O O2A ANP . . . H 3 10.426 62.445 -0.131 1 52.26 ? O2A ANP 301 B 1 HETATM 12 O O3A ANP . . . H 3 8.765 62.442 -2.221 1 56.46 ? O3A ANP 301 B 1 HETATM 13 O O5' ANP . . . H 3 8.706 60.526 -0.639 1 47.61 ? O5' ANP 301 B 1 HETATM 14 C C5' ANP . . . H 3 8.239 59.452 -1.433 1 43.41 ? C5' ANP 301 B 1 HETATM 15 C C4' ANP . . . H 3 7.443 58.56 -0.501 1 41.91 ? C4' ANP 301 B 1 HETATM 16 O O4' ANP . . . H 3 8.289 57.936 0.475 1 38.14 ? O4' ANP 301 B 1 HETATM 17 C C3' ANP . . . H 3 6.427 59.414 0.24 1 41.75 ? C3' ANP 301 B 1 HETATM 18 O O3' ANP . . . H 3 5.162 58.783 0.108 1 44.47 ? O3' ANP 301 B 1 HETATM 19 C C2' ANP . . . H 3 6.886 59.411 1.682 1 39.46 ? C2' ANP 301 B 1 HETATM 20 O O2' ANP . . . H 3 5.812 59.239 2.583 1 43.33 ? O2' ANP 301 B 1 HETATM 21 C C1' ANP . . . H 3 7.805 58.211 1.79 1 36.62 ? C1' ANP 301 B 1 HETATM 22 N N9 ANP . . . H 3 8.896 58.578 2.73 1 29.97 ? N9 ANP 301 B 1 HETATM 23 C C8 ANP . . . H 3 9.777 59.598 2.598 1 26.5 ? C8 ANP 301 B 1 HETATM 24 N N7 ANP . . . H 3 10.629 59.656 3.663 1 26.41 ? N7 ANP 301 B 1 HETATM 25 C C5 ANP . . . H 3 10.307 58.643 4.498 1 23.7 ? C5 ANP 301 B 1 HETATM 26 C C6 ANP . . . H 3 10.722 58.067 5.797 1 21.14 ? C6 ANP 301 B 1 HETATM 27 N N6 ANP . . . H 3 11.755 58.621 6.461 1 19.91 ? N6 ANP 301 B 1 HETATM 28 N N1 ANP . . . H 3 10.062 56.986 6.301 1 21.96 ? N1 ANP 301 B 1 HETATM 29 C C2 ANP . . . H 3 9.014 56.395 5.675 1 23.09 ? C2 ANP 301 B 1 HETATM 30 N N3 ANP . . . H 3 8.545 56.85 4.495 1 22.73 ? N3 ANP 301 B 1 HETATM 31 C C4 ANP . . . H 3 9.191 57.974 3.872 1 24.18 ? C4 ANP 301 B 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #