data_3CPB # _model_server_result.job_id XdNNOF63fm_BW7T6mynXUg _model_server_result.datetime_utc '2024-10-18 16:23:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cpb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2}' # _entry.id 3CPB # _exptl.entry_id 3CPB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.457 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N'-(6-aminopyridin-3-yl)-N-(2-cyclopentylethyl)-4-methyl-benzene-1,3-dicarboxamide" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.524 _cell.angle_gamma 90 _cell.entry_id 3CPB _cell.length_a 54.919 _cell.length_b 67.552 _cell.length_c 88.73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CPB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H26 N4 O2' _chem_comp.formula_weight 366.457 _chem_comp.id C92 _chem_comp.mon_nstd_flag . _chem_comp.name "N'-(6-aminopyridin-3-yl)-N-(2-cyclopentylethyl)-4-methyl-benzene-1,3-dicarboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C23 C92 sing 70 n n C23 C12 C92 sing 71 n n C23 H23 C92 sing 72 n n C23 H23A C92 sing 73 n n C24 C25 C92 sing 74 n n C24 H24 C92 sing 75 n n C24 H24A C92 sing 76 n n C25 C26 C92 sing 77 n n C25 H25 C92 sing 78 n n C25 H25A C92 sing 79 n n C26 C12 C92 sing 80 n n C26 H26 C92 sing 81 n n C26 H26A C92 sing 82 n n C12 C13 C92 sing 83 n n C12 H12 C92 sing 84 n n C13 C11 C92 sing 85 n n C13 H13 C92 sing 86 n n C13 H13A C92 sing 87 n n C11 N10 C92 sing 88 n n C11 H11 C92 sing 89 n n C11 H11A C92 sing 90 n n N10 C8 C92 sing 91 n n N10 HN10 C92 sing 92 n n O9 C8 C92 doub 93 n n C8 C4 C92 sing 94 n n C4 C5 C92 doub 95 n y C4 C3 C92 sing 96 n y C3 C2 C92 doub 97 n y C3 H3 C92 sing 98 n n C5 C6 C92 sing 99 n y C5 H5 C92 sing 100 n n C6 C7 C92 doub 101 n y C6 H6 C92 sing 102 n n C2 C7 C92 sing 103 n y C7 C14 C92 sing 104 n n C14 H14 C92 sing 105 n n C14 H14A C92 sing 106 n n C14 H14B C92 sing 107 n n C2 C1 C92 sing 108 n n C1 O15 C92 doub 109 n n C1 N16 C92 sing 110 n n N16 C17 C92 sing 111 n n N16 HN16 C92 sing 112 n n C17 C18 C92 doub 113 n y C17 C22 C92 sing 114 n y C22 C21 C92 doub 115 n y C22 H22 C92 sing 116 n n C21 C20 C92 sing 117 n y C21 H21 C92 sing 118 n n N19 C20 C92 doub 119 n y C20 N27 C92 sing 120 n n N27 HN27 C92 sing 121 n n N27 HN2A C92 sing 122 n n C18 N19 C92 sing 123 n y C18 H18 C92 sing 124 n n # _atom_sites.entry_id 3CPB _atom_sites.fract_transf_matrix[1][1] 0.0182 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0008 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 C92 A 1 1 1 C92 C92 . D 2 C92 B 1 2 2 C92 C92 . E 3 HOH A 1 1179 1 HOH HOH . E 3 HOH A 2 1180 2 HOH HOH . E 3 HOH A 3 1181 4 HOH HOH . E 3 HOH A 4 1182 5 HOH HOH . E 3 HOH A 5 1183 8 HOH HOH . E 3 HOH A 6 1184 10 HOH HOH . E 3 HOH A 7 1185 12 HOH HOH . E 3 HOH A 8 1186 13 HOH HOH . E 3 HOH A 9 1187 14 HOH HOH . E 3 HOH A 10 1188 15 HOH HOH . E 3 HOH A 11 1189 17 HOH HOH . E 3 HOH A 12 1190 18 HOH HOH . E 3 HOH A 13 1191 19 HOH HOH . E 3 HOH A 14 1192 20 HOH HOH . E 3 HOH A 15 1193 22 HOH HOH . E 3 HOH A 16 1194 26 HOH HOH . E 3 HOH A 17 1195 28 HOH HOH . E 3 HOH A 18 1196 30 HOH HOH . E 3 HOH A 19 1197 32 HOH HOH . E 3 HOH A 20 1198 33 HOH HOH . E 3 HOH A 21 1200 37 HOH HOH . E 3 HOH A 22 1201 39 HOH HOH . E 3 HOH A 23 1202 43 HOH HOH . E 3 HOH A 24 1203 46 HOH HOH . E 3 HOH A 25 1204 49 HOH HOH . E 3 HOH A 26 1205 50 HOH HOH . E 3 HOH A 27 1206 52 HOH HOH . E 3 HOH A 28 1207 53 HOH HOH . E 3 HOH A 29 1208 54 HOH HOH . E 3 HOH A 30 1209 55 HOH HOH . E 3 HOH A 31 1210 56 HOH HOH . E 3 HOH A 32 1211 59 HOH HOH . E 3 HOH A 33 1212 60 HOH HOH . E 3 HOH A 34 1213 62 HOH HOH . E 3 HOH A 35 1214 64 HOH HOH . E 3 HOH A 36 1215 65 HOH HOH . E 3 HOH A 37 1216 73 HOH HOH . E 3 HOH A 38 1217 74 HOH HOH . E 3 HOH A 39 1218 75 HOH HOH . E 3 HOH A 40 1219 76 HOH HOH . E 3 HOH A 41 1220 79 HOH HOH . E 3 HOH A 42 1221 87 HOH HOH . E 3 HOH A 43 1222 90 HOH HOH . E 3 HOH A 44 1223 91 HOH HOH . E 3 HOH A 45 1224 92 HOH HOH . E 3 HOH A 46 1225 95 HOH HOH . E 3 HOH A 47 1226 97 HOH HOH . F 3 HOH B 1 3 3 HOH HOH . F 3 HOH B 2 9 9 HOH HOH . F 3 HOH B 3 11 11 HOH HOH . F 3 HOH B 4 31 31 HOH HOH . F 3 HOH B 5 34 34 HOH HOH . F 3 HOH B 6 36 36 HOH HOH . F 3 HOH B 7 38 38 HOH HOH . F 3 HOH B 8 41 41 HOH HOH . F 3 HOH B 9 47 47 HOH HOH . F 3 HOH B 10 51 51 HOH HOH . F 3 HOH B 11 61 61 HOH HOH . F 3 HOH B 12 68 68 HOH HOH . F 3 HOH B 13 80 80 HOH HOH . F 3 HOH B 14 88 88 HOH HOH . F 3 HOH B 15 89 89 HOH HOH . F 3 HOH B 16 1199 35 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C23 C92 . . . D 2 29.707 2.426 10.593 1 34.28 ? C23 C92 2 B 1 HETATM 2 C C24 C92 . . . D 2 28.722 2.931 9.546 1 34.68 ? C24 C92 2 B 1 HETATM 3 C C25 C92 . . . D 2 28.252 4.269 10.128 1 34.34 ? C25 C92 2 B 1 HETATM 4 C C26 C92 . . . D 2 28.266 4.069 11.651 1 34.51 ? C26 C92 2 B 1 HETATM 5 C C12 C92 . . . D 2 28.973 2.727 11.899 1 34.09 ? C12 C92 2 B 1 HETATM 6 C C13 C92 . . . D 2 29.994 2.898 13.022 1 33.37 ? C13 C92 2 B 1 HETATM 7 C C11 C92 . . . D 2 29.987 1.669 13.926 1 32.23 ? C11 C92 2 B 1 HETATM 8 N N10 C92 . . . D 2 30.088 2.068 15.337 1 31.59 ? N10 C92 2 B 1 HETATM 9 C C8 C92 . . . D 2 29.04 2.488 16.051 1 31.38 ? C8 C92 2 B 1 HETATM 10 O O9 C92 . . . D 2 27.892 2.577 15.615 1 31.05 ? O9 C92 2 B 1 HETATM 11 C C4 C92 . . . D 2 29.336 2.843 17.511 1 31.06 ? C4 C92 2 B 1 HETATM 12 C C3 C92 . . . D 2 28.289 2.784 18.426 1 31.19 ? C3 C92 2 B 1 HETATM 13 C C5 C92 . . . D 2 30.615 3.201 17.934 1 30.84 ? C5 C92 2 B 1 HETATM 14 C C6 C92 . . . D 2 30.833 3.502 19.277 1 30.99 ? C6 C92 2 B 1 HETATM 15 C C7 C92 . . . D 2 29.78 3.451 20.196 1 31.25 ? C7 C92 2 B 1 HETATM 16 C C14 C92 . . . D 2 30.068 3.791 21.659 1 31 ? C14 C92 2 B 1 HETATM 17 C C2 C92 . . . D 2 28.494 3.098 19.765 1 31.53 ? C2 C92 2 B 1 HETATM 18 C C1 C92 . . . D 2 27.284 2.99 20.708 1 31.9 ? C1 C92 2 B 1 HETATM 19 O O15 C92 . . . D 2 26.9 1.869 21.043 1 33.48 ? O15 C92 2 B 1 HETATM 20 N N16 C92 . . . D 2 26.706 4.135 21.098 1 31.74 ? N16 C92 2 B 1 HETATM 21 C C17 C92 . . . D 2 25.634 4.199 21.917 1 31.64 ? C17 C92 2 B 1 HETATM 22 C C22 C92 . . . D 2 25.094 3.069 22.54 1 31.45 ? C22 C92 2 B 1 HETATM 23 C C21 C92 . . . D 2 23.986 3.198 23.372 1 31.35 ? C21 C92 2 B 1 HETATM 24 C C20 C92 . . . D 2 23.436 4.46 23.571 1 31.44 ? C20 C92 2 B 1 HETATM 25 N N27 C92 . . . D 2 22.376 4.603 24.362 1 31.18 ? N27 C92 2 B 1 HETATM 26 N N19 C92 . . . D 2 23.974 5.535 22.963 1 31.68 ? N19 C92 2 B 1 HETATM 27 C C18 C92 . . . D 2 25.03 5.434 22.162 1 31.74 ? C18 C92 2 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #