data_3CPH # _model_server_result.job_id aHgpxUHynCTiiKYAC9vrNg _model_server_result.datetime_utc '2024-11-19 13:40:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cph # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 3CPH # _exptl.entry_id 3CPH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3CPH _cell.length_a 131.9 _cell.length_b 131.9 _cell.length_c 217.562 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CPH _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G 1 1 C,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OG SER 34 A SER 34 1_555 D MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc2 D MG MG . A MG 301 1_555 E O2B GDP . A GDP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3CPH _atom_sites.fract_transf_matrix[1][1] 0.007582 _atom_sites.fract_transf_matrix[1][2] 0.004377 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004596 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 MG A 1 301 301 MG MG . E 4 GDP A 1 302 201 GDP GDP . F 5 HOH G 1 452 2 HOH HOH . F 5 HOH G 2 453 4 HOH HOH . F 5 HOH G 3 454 5 HOH HOH . F 5 HOH G 4 455 6 HOH HOH . F 5 HOH G 5 456 7 HOH HOH . F 5 HOH G 6 457 8 HOH HOH . F 5 HOH G 7 458 10 HOH HOH . F 5 HOH G 8 459 12 HOH HOH . F 5 HOH G 9 460 13 HOH HOH . F 5 HOH G 10 461 14 HOH HOH . F 5 HOH G 11 462 16 HOH HOH . F 5 HOH G 12 463 17 HOH HOH . F 5 HOH G 13 464 18 HOH HOH . F 5 HOH G 14 465 21 HOH HOH . F 5 HOH G 15 466 22 HOH HOH . F 5 HOH G 16 467 25 HOH HOH . F 5 HOH G 17 468 28 HOH HOH . F 5 HOH G 18 469 29 HOH HOH . F 5 HOH G 19 470 30 HOH HOH . F 5 HOH G 20 471 31 HOH HOH . F 5 HOH G 21 472 33 HOH HOH . F 5 HOH G 22 473 34 HOH HOH . F 5 HOH G 23 474 35 HOH HOH . F 5 HOH G 24 475 38 HOH HOH . F 5 HOH G 25 476 39 HOH HOH . F 5 HOH G 26 477 42 HOH HOH . F 5 HOH G 27 478 43 HOH HOH . F 5 HOH G 28 479 44 HOH HOH . F 5 HOH G 29 480 45 HOH HOH . F 5 HOH G 30 481 47 HOH HOH . F 5 HOH G 31 482 49 HOH HOH . F 5 HOH G 32 483 50 HOH HOH . F 5 HOH G 33 484 51 HOH HOH . F 5 HOH G 34 485 52 HOH HOH . F 5 HOH G 35 486 53 HOH HOH . F 5 HOH G 36 487 54 HOH HOH . F 5 HOH G 37 488 55 HOH HOH . F 5 HOH G 38 489 56 HOH HOH . F 5 HOH G 39 490 57 HOH HOH . F 5 HOH G 40 491 63 HOH HOH . F 5 HOH G 41 492 65 HOH HOH . F 5 HOH G 42 493 70 HOH HOH . F 5 HOH G 43 494 71 HOH HOH . F 5 HOH G 44 495 72 HOH HOH . F 5 HOH G 45 496 73 HOH HOH . F 5 HOH G 46 497 84 HOH HOH . F 5 HOH G 47 498 86 HOH HOH . G 5 HOH A 1 303 1 HOH HOH . G 5 HOH A 2 304 3 HOH HOH . G 5 HOH A 3 305 9 HOH HOH . G 5 HOH A 4 306 11 HOH HOH . G 5 HOH A 5 307 15 HOH HOH . G 5 HOH A 6 308 19 HOH HOH . G 5 HOH A 7 309 20 HOH HOH . G 5 HOH A 8 310 23 HOH HOH . G 5 HOH A 9 311 24 HOH HOH . G 5 HOH A 10 312 26 HOH HOH . G 5 HOH A 11 313 27 HOH HOH . G 5 HOH A 12 314 32 HOH HOH . G 5 HOH A 13 315 36 HOH HOH . G 5 HOH A 14 316 37 HOH HOH . G 5 HOH A 15 317 40 HOH HOH . G 5 HOH A 16 318 41 HOH HOH . G 5 HOH A 17 319 48 HOH HOH . G 5 HOH A 18 320 58 HOH HOH . G 5 HOH A 19 321 59 HOH HOH . G 5 HOH A 20 322 60 HOH HOH . G 5 HOH A 21 323 61 HOH HOH . G 5 HOH A 22 324 62 HOH HOH . G 5 HOH A 23 325 64 HOH HOH . G 5 HOH A 24 326 66 HOH HOH . G 5 HOH A 25 327 67 HOH HOH . G 5 HOH A 26 328 68 HOH HOH . G 5 HOH A 27 329 69 HOH HOH . G 5 HOH A 28 330 74 HOH HOH . G 5 HOH A 29 460 83 HOH HOH . H 5 HOH H 1 452 75 HOH HOH . H 5 HOH H 2 453 76 HOH HOH . H 5 HOH H 3 454 77 HOH HOH . H 5 HOH H 4 455 78 HOH HOH . H 5 HOH H 5 456 79 HOH HOH . H 5 HOH H 6 457 80 HOH HOH . H 5 HOH H 7 458 81 HOH HOH . H 5 HOH H 8 459 82 HOH HOH . H 5 HOH H 9 462 85 HOH HOH . H 5 HOH H 10 463 87 HOH HOH . H 5 HOH H 11 464 88 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 57.294 _atom_site.Cartn_y 16.017 _atom_site.Cartn_z 7.758 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.68 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #