data_3CQB # _model_server_result.job_id EFFhtc7NFPW9KMi5vuH3EA _model_server_result.datetime_utc '2024-12-21 13:44:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cqb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":105}' # _entry.id 3CQB # _exptl.entry_id 3CQB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3CQB _cell.length_a 75.873 _cell.length_b 75.873 _cell.length_c 65.471 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CQB _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 21.823667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 6 A GLY 3 1_555 A N MSE 7 A MSE 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C MSE 7 A MSE 4 1_555 A N ALA 8 A ALA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale3 A C GLY 14 A GLY 11 1_555 A N MSE 15 A MSE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 15 A MSE 12 1_555 A N VAL 16 A VAL 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale5 A C GLY 42 A GLY 39 1_555 A N MSE 43 A MSE 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C MSE 43 A MSE 40 1_555 A N PRO 44 A PRO 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale7 A C ASN 77 A ASN 74 1_555 A N MSE 78 A MSE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 A C MSE 78 A MSE 75 1_555 A N THR 79 A THR 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale9 A C ASP 98 A ASP 95 1_555 A N MSE 99 A MSE 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 A C MSE 99 A MSE 96 1_555 A N VAL 100 A VAL 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 A C THR 101 A THR 98 1_555 A N MSE 102 A MSE 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 A C MSE 102 A MSE 99 1_555 A N THR 103 A THR 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 A C LEU 104 A LEU 101 1_555 A N MSE 105 A MSE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 A C MSE 105 A MSE 102 1_555 A N GLN 106 A GLN 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale15 B C MSE 7 B MSE 4 1_555 B N ALA 8 B ALA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale16 B C GLY 14 B GLY 11 1_555 B N MSE 15 B MSE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale17 B C MSE 15 B MSE 12 1_555 B N VAL 16 B VAL 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale18 B C GLY 42 B GLY 39 1_555 B N MSE 43 B MSE 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale19 B C MSE 43 B MSE 40 1_555 B N PRO 44 B PRO 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale20 B C ASN 77 B ASN 74 1_555 B N MSE 78 B MSE 75 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.329 ? covale ? covale21 B C ASN 77 B ASN 74 1_555 B N MSE 78 B MSE 75 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.33 ? covale ? covale22 B C MSE 78 B MSE 75 1_555 B N THR 79 B THR 76 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale23 B C MSE 78 B MSE 75 1_555 B N THR 79 B THR 76 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale24 B C ASP 98 B ASP 95 1_555 B N MSE 99 B MSE 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale25 B C MSE 99 B MSE 96 1_555 B N VAL 100 B VAL 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale26 B C THR 101 B THR 98 1_555 B N MSE 102 B MSE 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale27 B C MSE 102 B MSE 99 1_555 B N THR 103 B THR 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale28 B C LEU 104 B LEU 101 1_555 B N MSE 105 B MSE 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale29 B C MSE 105 B MSE 102 1_555 B N GLN 106 B GLN 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? metalc ? metalc1 A OD1 ASP 53 A ASP 50 1_555 D NA NA . A NA 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc2 D NA NA . A NA 106 1_555 L O HOH . A HOH 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc3 D NA NA . A NA 106 1_555 L O HOH . A HOH 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc4 B OD1 ASP 50 B ASP 47 1_555 H NA NA . B NA 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc5 B OG1 THR 72 B THR 69 1_555 H NA NA . B NA 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3CQB _atom_sites.fract_transf_matrix[1][1] 0.01318 _atom_sites.fract_transf_matrix[1][2] 0.007609 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015274 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 105 105 CL CL . D 3 NA A 1 106 106 NA NA . E 4 EDO A 1 107 107 EDO EDO . F 4 EDO A 1 108 108 EDO EDO . G 4 EDO A 1 109 109 EDO EDO . H 3 NA B 1 105 105 NA NA . I 4 EDO B 1 106 106 EDO EDO . J 4 EDO B 1 107 107 EDO EDO . K 5 GOL B 1 108 108 GOL GOL . L 6 HOH A 1 110 110 HOH HOH . L 6 HOH A 2 111 111 HOH HOH . L 6 HOH A 3 112 112 HOH HOH . L 6 HOH A 4 113 113 HOH HOH . L 6 HOH A 5 114 114 HOH HOH . L 6 HOH A 6 115 115 HOH HOH . L 6 HOH A 7 116 116 HOH HOH . L 6 HOH A 8 117 117 HOH HOH . L 6 HOH A 9 118 118 HOH HOH . L 6 HOH A 10 119 119 HOH HOH . L 6 HOH A 11 120 120 HOH HOH . L 6 HOH A 12 121 121 HOH HOH . L 6 HOH A 13 122 122 HOH HOH . L 6 HOH A 14 123 123 HOH HOH . L 6 HOH A 15 124 124 HOH HOH . L 6 HOH A 16 125 125 HOH HOH . L 6 HOH A 17 126 126 HOH HOH . L 6 HOH A 18 127 127 HOH HOH . L 6 HOH A 19 128 128 HOH HOH . L 6 HOH A 20 129 129 HOH HOH . L 6 HOH A 21 130 130 HOH HOH . L 6 HOH A 22 131 131 HOH HOH . L 6 HOH A 23 132 132 HOH HOH . L 6 HOH A 24 133 133 HOH HOH . L 6 HOH A 25 134 134 HOH HOH . L 6 HOH A 26 135 135 HOH HOH . L 6 HOH A 27 136 136 HOH HOH . L 6 HOH A 28 137 137 HOH HOH . L 6 HOH A 29 138 138 HOH HOH . L 6 HOH A 30 139 139 HOH HOH . L 6 HOH A 31 140 140 HOH HOH . L 6 HOH A 32 141 141 HOH HOH . L 6 HOH A 33 142 142 HOH HOH . L 6 HOH A 34 143 143 HOH HOH . L 6 HOH A 35 144 144 HOH HOH . L 6 HOH A 36 145 145 HOH HOH . L 6 HOH A 37 146 146 HOH HOH . L 6 HOH A 38 147 147 HOH HOH . L 6 HOH A 39 148 148 HOH HOH . L 6 HOH A 40 149 149 HOH HOH . L 6 HOH A 41 150 150 HOH HOH . L 6 HOH A 42 151 151 HOH HOH . L 6 HOH A 43 152 152 HOH HOH . L 6 HOH A 44 153 153 HOH HOH . L 6 HOH A 45 154 154 HOH HOH . L 6 HOH A 46 155 155 HOH HOH . L 6 HOH A 47 156 156 HOH HOH . L 6 HOH A 48 157 157 HOH HOH . L 6 HOH A 49 158 158 HOH HOH . L 6 HOH A 50 159 159 HOH HOH . L 6 HOH A 51 160 160 HOH HOH . L 6 HOH A 52 161 161 HOH HOH . L 6 HOH A 53 162 162 HOH HOH . L 6 HOH A 54 163 163 HOH HOH . L 6 HOH A 55 164 164 HOH HOH . L 6 HOH A 56 165 165 HOH HOH . L 6 HOH A 57 166 166 HOH HOH . L 6 HOH A 58 167 167 HOH HOH . L 6 HOH A 59 168 168 HOH HOH . L 6 HOH A 60 169 169 HOH HOH . L 6 HOH A 61 170 170 HOH HOH . L 6 HOH A 62 171 171 HOH HOH . L 6 HOH A 63 172 172 HOH HOH . L 6 HOH A 64 173 173 HOH HOH . L 6 HOH A 65 174 174 HOH HOH . L 6 HOH A 66 175 175 HOH HOH . L 6 HOH A 67 176 176 HOH HOH . L 6 HOH A 68 177 177 HOH HOH . L 6 HOH A 69 178 178 HOH HOH . L 6 HOH A 70 179 179 HOH HOH . L 6 HOH A 71 180 180 HOH HOH . L 6 HOH A 72 181 181 HOH HOH . L 6 HOH A 73 182 182 HOH HOH . L 6 HOH A 74 183 183 HOH HOH . L 6 HOH A 75 184 184 HOH HOH . L 6 HOH A 76 185 185 HOH HOH . L 6 HOH A 77 186 186 HOH HOH . L 6 HOH A 78 187 187 HOH HOH . L 6 HOH A 79 188 188 HOH HOH . L 6 HOH A 80 189 189 HOH HOH . L 6 HOH A 81 190 190 HOH HOH . L 6 HOH A 82 191 191 HOH HOH . L 6 HOH A 83 192 192 HOH HOH . L 6 HOH A 84 193 193 HOH HOH . L 6 HOH A 85 194 194 HOH HOH . L 6 HOH A 86 195 195 HOH HOH . L 6 HOH A 87 196 196 HOH HOH . L 6 HOH A 88 197 197 HOH HOH . L 6 HOH A 89 198 198 HOH HOH . L 6 HOH A 90 199 199 HOH HOH . L 6 HOH A 91 200 200 HOH HOH . L 6 HOH A 92 201 201 HOH HOH . L 6 HOH A 93 202 202 HOH HOH . L 6 HOH A 94 203 203 HOH HOH . L 6 HOH A 95 204 204 HOH HOH . L 6 HOH A 96 205 205 HOH HOH . L 6 HOH A 97 206 206 HOH HOH . L 6 HOH A 98 207 207 HOH HOH . L 6 HOH A 99 208 208 HOH HOH . L 6 HOH A 100 209 209 HOH HOH . L 6 HOH A 101 210 210 HOH HOH . L 6 HOH A 102 211 211 HOH HOH . L 6 HOH A 103 212 212 HOH HOH . L 6 HOH A 104 213 213 HOH HOH . L 6 HOH A 105 214 214 HOH HOH . L 6 HOH A 106 215 215 HOH HOH . L 6 HOH A 107 216 216 HOH HOH . L 6 HOH A 108 217 217 HOH HOH . M 6 HOH B 1 169 169 HOH HOH . M 6 HOH B 2 170 170 HOH HOH . M 6 HOH B 3 171 171 HOH HOH . M 6 HOH B 4 172 172 HOH HOH . M 6 HOH B 5 173 173 HOH HOH . M 6 HOH B 6 174 174 HOH HOH . M 6 HOH B 7 175 175 HOH HOH . M 6 HOH B 8 176 176 HOH HOH . M 6 HOH B 9 177 177 HOH HOH . M 6 HOH B 10 178 178 HOH HOH . M 6 HOH B 11 179 179 HOH HOH . M 6 HOH B 12 180 180 HOH HOH . M 6 HOH B 13 181 181 HOH HOH . M 6 HOH B 14 182 182 HOH HOH . M 6 HOH B 15 183 183 HOH HOH . M 6 HOH B 16 184 184 HOH HOH . M 6 HOH B 17 185 185 HOH HOH . M 6 HOH B 18 186 186 HOH HOH . M 6 HOH B 19 187 187 HOH HOH . M 6 HOH B 20 188 188 HOH HOH . M 6 HOH B 21 189 189 HOH HOH . M 6 HOH B 22 190 190 HOH HOH . M 6 HOH B 23 191 191 HOH HOH . M 6 HOH B 24 192 192 HOH HOH . M 6 HOH B 25 193 193 HOH HOH . M 6 HOH B 26 194 194 HOH HOH . M 6 HOH B 27 195 195 HOH HOH . M 6 HOH B 28 196 196 HOH HOH . M 6 HOH B 29 197 197 HOH HOH . M 6 HOH B 30 198 198 HOH HOH . M 6 HOH B 31 199 199 HOH HOH . M 6 HOH B 32 200 200 HOH HOH . M 6 HOH B 33 201 201 HOH HOH . M 6 HOH B 34 202 202 HOH HOH . M 6 HOH B 35 203 203 HOH HOH . M 6 HOH B 36 204 204 HOH HOH . M 6 HOH B 37 205 205 HOH HOH . M 6 HOH B 38 206 206 HOH HOH . M 6 HOH B 39 207 207 HOH HOH . M 6 HOH B 40 208 208 HOH HOH . M 6 HOH B 41 209 209 HOH HOH . M 6 HOH B 42 210 210 HOH HOH . M 6 HOH B 43 211 211 HOH HOH . M 6 HOH B 44 212 212 HOH HOH . M 6 HOH B 45 213 213 HOH HOH . M 6 HOH B 46 214 214 HOH HOH . M 6 HOH B 47 215 215 HOH HOH . M 6 HOH B 48 216 216 HOH HOH . M 6 HOH B 49 217 217 HOH HOH . M 6 HOH B 50 218 218 HOH HOH . M 6 HOH B 51 219 219 HOH HOH . M 6 HOH B 52 220 220 HOH HOH . M 6 HOH B 53 221 221 HOH HOH . M 6 HOH B 54 222 222 HOH HOH . M 6 HOH B 55 223 223 HOH HOH . M 6 HOH B 56 224 224 HOH HOH . M 6 HOH B 57 225 225 HOH HOH . M 6 HOH B 58 226 226 HOH HOH . M 6 HOH B 59 227 227 HOH HOH . M 6 HOH B 60 228 228 HOH HOH . M 6 HOH B 61 229 229 HOH HOH . M 6 HOH B 62 230 230 HOH HOH . M 6 HOH B 63 231 231 HOH HOH . M 6 HOH B 64 232 232 HOH HOH . M 6 HOH B 65 233 233 HOH HOH . M 6 HOH B 66 234 234 HOH HOH . M 6 HOH B 67 235 235 HOH HOH . M 6 HOH B 68 236 236 HOH HOH . M 6 HOH B 69 237 237 HOH HOH . M 6 HOH B 70 238 238 HOH HOH . M 6 HOH B 71 239 239 HOH HOH . M 6 HOH B 72 240 240 HOH HOH . M 6 HOH B 73 241 241 HOH HOH . M 6 HOH B 74 242 242 HOH HOH . M 6 HOH B 75 243 243 HOH HOH . M 6 HOH B 76 244 244 HOH HOH . M 6 HOH B 77 245 245 HOH HOH . M 6 HOH B 78 246 246 HOH HOH . M 6 HOH B 79 247 247 HOH HOH . M 6 HOH B 80 248 248 HOH HOH . M 6 HOH B 81 249 249 HOH HOH . M 6 HOH B 82 250 250 HOH HOH . M 6 HOH B 83 251 251 HOH HOH . M 6 HOH B 84 252 252 HOH HOH . M 6 HOH B 85 253 253 HOH HOH . M 6 HOH B 86 254 254 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x 28.43 _atom_site.Cartn_y -26.732 _atom_site.Cartn_z -0.537 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.43 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 105 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #