data_3CQR # _model_server_result.job_id u7-T7bUdb47ojQEc46MJLg _model_server_result.datetime_utc '2024-11-05 00:35:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cqr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 3CQR # _exptl.entry_id 3CQR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 157.25 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GADOLINIUM ATOM' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CQR _cell.length_a 122.297 _cell.length_b 122.297 _cell.length_c 158.337 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CQR _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,C,F 2 2 B,D,E,G 2 1 A,B,C,D,E,F,G 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 -x+1/2,y,-z+3/4 -1 0 0 0 1 0 0 0 -1 61.1485 0 118.75275 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 42 A CYS 118 1_555 A SG CYS 173 A CYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 42 B CYS 118 1_555 B SG CYS 173 B CYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 A N GLU 5 A GLU 81 1_555 C GD GD . A GD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc2 A O GLU 5 A GLU 81 1_555 C GD GD . A GD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.083 ? metalc ? metalc3 C GD GD . A GD 401 1_555 F O HOH . A HOH 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.403 ? metalc ? metalc4 C GD GD . A GD 401 1_555 F O HOH . A HOH 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? # _chem_comp.formula Gd _chem_comp.formula_weight 157.25 _chem_comp.id GD _chem_comp.mon_nstd_flag . _chem_comp.name 'GADOLINIUM ATOM' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3CQR _atom_sites.fract_transf_matrix[1][1] 0.008177 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008177 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006316 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GD A 1 401 401 GD GD . D 2 GD B 1 402 402 GD GD . E 2 GD B 1 403 403 GD GD . F 3 HOH A 1 402 2 HOH HOH . F 3 HOH A 2 403 3 HOH HOH . F 3 HOH A 3 404 4 HOH HOH . F 3 HOH A 4 405 9 HOH HOH . F 3 HOH A 5 406 15 HOH HOH . F 3 HOH A 6 407 19 HOH HOH . F 3 HOH A 7 408 20 HOH HOH . F 3 HOH A 8 409 23 HOH HOH . F 3 HOH A 9 410 26 HOH HOH . F 3 HOH A 10 411 27 HOH HOH . F 3 HOH A 11 412 28 HOH HOH . F 3 HOH A 12 413 29 HOH HOH . F 3 HOH A 13 414 32 HOH HOH . F 3 HOH A 14 415 37 HOH HOH . F 3 HOH A 15 416 38 HOH HOH . F 3 HOH A 16 417 39 HOH HOH . F 3 HOH A 17 418 41 HOH HOH . F 3 HOH A 18 419 42 HOH HOH . F 3 HOH A 19 420 45 HOH HOH . F 3 HOH A 20 421 47 HOH HOH . F 3 HOH A 21 422 50 HOH HOH . F 3 HOH A 22 423 53 HOH HOH . F 3 HOH A 23 424 56 HOH HOH . F 3 HOH A 24 425 60 HOH HOH . F 3 HOH A 25 426 61 HOH HOH . F 3 HOH A 26 427 62 HOH HOH . F 3 HOH A 27 428 64 HOH HOH . F 3 HOH A 28 429 72 HOH HOH . F 3 HOH A 29 430 75 HOH HOH . F 3 HOH A 30 431 79 HOH HOH . F 3 HOH A 31 432 82 HOH HOH . F 3 HOH A 32 433 84 HOH HOH . F 3 HOH A 33 434 86 HOH HOH . F 3 HOH A 34 435 87 HOH HOH . F 3 HOH A 35 436 88 HOH HOH . F 3 HOH A 36 437 89 HOH HOH . F 3 HOH A 37 438 90 HOH HOH . F 3 HOH A 38 439 92 HOH HOH . F 3 HOH A 39 440 93 HOH HOH . F 3 HOH A 40 441 97 HOH HOH . F 3 HOH A 41 442 100 HOH HOH . F 3 HOH A 42 443 101 HOH HOH . F 3 HOH A 43 444 104 HOH HOH . F 3 HOH A 44 445 106 HOH HOH . F 3 HOH A 45 446 107 HOH HOH . F 3 HOH A 46 447 108 HOH HOH . F 3 HOH A 47 448 109 HOH HOH . F 3 HOH A 48 449 110 HOH HOH . F 3 HOH A 49 450 113 HOH HOH . F 3 HOH A 50 451 120 HOH HOH . F 3 HOH A 51 452 123 HOH HOH . F 3 HOH A 52 453 124 HOH HOH . F 3 HOH A 53 454 125 HOH HOH . F 3 HOH A 54 455 126 HOH HOH . F 3 HOH A 55 456 127 HOH HOH . F 3 HOH A 56 457 129 HOH HOH . F 3 HOH A 57 458 132 HOH HOH . F 3 HOH A 58 459 133 HOH HOH . F 3 HOH A 59 460 136 HOH HOH . F 3 HOH A 60 461 137 HOH HOH . F 3 HOH A 61 462 138 HOH HOH . F 3 HOH A 62 463 139 HOH HOH . F 3 HOH A 63 464 140 HOH HOH . F 3 HOH A 64 465 142 HOH HOH . F 3 HOH A 65 466 147 HOH HOH . F 3 HOH A 66 467 151 HOH HOH . F 3 HOH A 67 468 154 HOH HOH . F 3 HOH A 68 469 155 HOH HOH . F 3 HOH A 69 470 156 HOH HOH . F 3 HOH A 70 471 157 HOH HOH . F 3 HOH A 71 472 158 HOH HOH . F 3 HOH A 72 473 160 HOH HOH . F 3 HOH A 73 474 161 HOH HOH . F 3 HOH A 74 475 167 HOH HOH . F 3 HOH A 75 476 171 HOH HOH . F 3 HOH A 76 477 172 HOH HOH . F 3 HOH A 77 478 174 HOH HOH . F 3 HOH A 78 479 175 HOH HOH . F 3 HOH A 79 480 176 HOH HOH . F 3 HOH A 80 481 178 HOH HOH . F 3 HOH A 81 482 184 HOH HOH . F 3 HOH A 82 483 185 HOH HOH . F 3 HOH A 83 484 186 HOH HOH . F 3 HOH A 84 485 187 HOH HOH . F 3 HOH A 85 486 188 HOH HOH . F 3 HOH A 86 487 191 HOH HOH . F 3 HOH A 87 488 11 HOH HOH . F 3 HOH A 88 489 166 HOH HOH . G 3 HOH B 1 452 122 HOH HOH . G 3 HOH B 2 453 1 HOH HOH . G 3 HOH B 3 454 6 HOH HOH . G 3 HOH B 4 455 7 HOH HOH . G 3 HOH B 5 456 8 HOH HOH . G 3 HOH B 6 457 10 HOH HOH . G 3 HOH B 7 458 12 HOH HOH . G 3 HOH B 8 459 13 HOH HOH . G 3 HOH B 9 460 16 HOH HOH . G 3 HOH B 10 461 17 HOH HOH . G 3 HOH B 11 462 18 HOH HOH . G 3 HOH B 12 463 21 HOH HOH . G 3 HOH B 13 464 24 HOH HOH . G 3 HOH B 14 465 25 HOH HOH . G 3 HOH B 15 466 30 HOH HOH . G 3 HOH B 16 467 31 HOH HOH . G 3 HOH B 17 468 33 HOH HOH . G 3 HOH B 18 469 34 HOH HOH . G 3 HOH B 19 470 35 HOH HOH . G 3 HOH B 20 471 36 HOH HOH . G 3 HOH B 21 472 40 HOH HOH . G 3 HOH B 22 473 43 HOH HOH . G 3 HOH B 23 474 44 HOH HOH . G 3 HOH B 24 475 46 HOH HOH . G 3 HOH B 25 476 48 HOH HOH . G 3 HOH B 26 477 49 HOH HOH . G 3 HOH B 27 478 51 HOH HOH . G 3 HOH B 28 479 52 HOH HOH . G 3 HOH B 29 480 54 HOH HOH . G 3 HOH B 30 481 55 HOH HOH . G 3 HOH B 31 482 57 HOH HOH . G 3 HOH B 32 483 58 HOH HOH . G 3 HOH B 33 484 59 HOH HOH . G 3 HOH B 34 485 63 HOH HOH . G 3 HOH B 35 486 65 HOH HOH . G 3 HOH B 36 487 66 HOH HOH . G 3 HOH B 37 488 67 HOH HOH . G 3 HOH B 38 489 70 HOH HOH . G 3 HOH B 39 490 74 HOH HOH . G 3 HOH B 40 491 76 HOH HOH . G 3 HOH B 41 492 77 HOH HOH . G 3 HOH B 42 493 80 HOH HOH . G 3 HOH B 43 494 81 HOH HOH . G 3 HOH B 44 495 85 HOH HOH . G 3 HOH B 45 496 91 HOH HOH . G 3 HOH B 46 497 94 HOH HOH . G 3 HOH B 47 498 95 HOH HOH . G 3 HOH B 48 499 96 HOH HOH . G 3 HOH B 49 500 98 HOH HOH . G 3 HOH B 50 501 99 HOH HOH . G 3 HOH B 51 502 102 HOH HOH . G 3 HOH B 52 503 103 HOH HOH . G 3 HOH B 53 504 105 HOH HOH . G 3 HOH B 54 505 111 HOH HOH . G 3 HOH B 55 506 112 HOH HOH . G 3 HOH B 56 507 114 HOH HOH . G 3 HOH B 57 508 115 HOH HOH . G 3 HOH B 58 509 116 HOH HOH . G 3 HOH B 59 510 117 HOH HOH . G 3 HOH B 60 511 118 HOH HOH . G 3 HOH B 61 512 119 HOH HOH . G 3 HOH B 62 513 121 HOH HOH . G 3 HOH B 63 514 128 HOH HOH . G 3 HOH B 64 515 130 HOH HOH . G 3 HOH B 65 516 131 HOH HOH . G 3 HOH B 66 517 134 HOH HOH . G 3 HOH B 67 518 135 HOH HOH . G 3 HOH B 68 519 141 HOH HOH . G 3 HOH B 69 520 143 HOH HOH . G 3 HOH B 70 521 144 HOH HOH . G 3 HOH B 71 522 145 HOH HOH . G 3 HOH B 72 523 146 HOH HOH . G 3 HOH B 73 524 148 HOH HOH . G 3 HOH B 74 525 150 HOH HOH . G 3 HOH B 75 526 152 HOH HOH . G 3 HOH B 76 527 162 HOH HOH . G 3 HOH B 77 528 163 HOH HOH . G 3 HOH B 78 529 164 HOH HOH . G 3 HOH B 79 530 165 HOH HOH . G 3 HOH B 80 531 168 HOH HOH . G 3 HOH B 81 532 169 HOH HOH . G 3 HOH B 82 533 170 HOH HOH . G 3 HOH B 83 534 173 HOH HOH . G 3 HOH B 84 535 179 HOH HOH . G 3 HOH B 85 536 180 HOH HOH . G 3 HOH B 86 537 182 HOH HOH . G 3 HOH B 87 538 183 HOH HOH . G 3 HOH B 88 539 189 HOH HOH . G 3 HOH B 89 540 190 HOH HOH . G 3 HOH B 90 541 192 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol GD _atom_site.label_atom_id GD _atom_site.label_comp_id GD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 31.213 _atom_site.Cartn_y 49.11 _atom_site.Cartn_z 62.695 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 24.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id GD _atom_site.auth_comp_id GD _atom_site.auth_seq_id 402 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #