data_3CR4
#
_model_server_result.job_id            yz62JdQvXWPCH8u6hnb74g 
_model_server_result.datetime_utc      '2024-11-05 21:05:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3cr4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":101}' 
#
_entry.id    3CR4 
#
_exptl.entry_id    3CR4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              340.419 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,5-BIS(4-AMIDINOPHENOXY)PENTANE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3CR4 
_cell.length_a            63.587 
_cell.length_b            63.587 
_cell.length_c            48.248 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CR4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 24.124 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O SER 19 X SER 18 1_555 D CA CA . X CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc2 A O GLU 22 X GLU 21 1_555 D CA CA . X CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc3 A O ASP 24 X ASP 23 1_555 D CA CA . X CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc4 A O LYS 27 X LYS 26 1_555 D CA CA . X CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc5 A OE1 GLU 32 X GLU 31 1_555 D CA CA . X CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? 
metalc ? metalc6 A OE2 GLU 32 X GLU 31 1_555 D CA CA . X CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? 
metalc ? metalc7 A OD1 ASP 62 X ASP 61 1_555 E CA CA . X CA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc8 A OD1 ASP 64 X ASP 63 1_555 E CA CA . X CA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc9 A OD1 ASP 66 X ASP 65 1_555 E CA CA . X CA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc10 A O GLU 68 X GLU 67 1_555 E CA CA . X CA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc11 A OE1 GLU 73 X GLU 72 1_555 E CA CA . X CA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? 
metalc ? metalc12 A OE2 GLU 73 X GLU 72 1_555 E CA CA . X CA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc13 D CA CA . X CA 103 1_555 F O HOH . X HOH 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc14 E CA CA . X CA 104 1_555 F O HOH . X HOH 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? 
#
_chem_comp.formula           'C19 H24 N4 O2' 
_chem_comp.formula_weight    340.419 
_chem_comp.id                PNT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,5-BIS(4-AMIDINOPHENOXY)PENTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PNT doub 260 n y 
C1 C6 PNT sing 261 n y 
C1 O1 PNT sing 262 n n 
C2 C3 PNT sing 263 n y 
C2 H2 PNT sing 264 n n 
C3 C4 PNT doub 265 n y 
C3 H3 PNT sing 266 n n 
C4 C5 PNT sing 267 n y 
C4 C9 PNT sing 268 n n 
C5 C6 PNT doub 269 n y 
C5 H5 PNT sing 270 n n 
C6 H6 PNT sing 271 n n 
C7 C8 PNT sing 272 n n 
C7 O1 PNT sing 273 n n 
C7 H71 PNT sing 274 n n 
C7 H72 PNT sing 275 n n 
C8 C10 PNT sing 276 n n 
C8 H81 PNT sing 277 n n 
C8 H82 PNT sing 278 n n 
C9 N1 PNT doub 279 n n 
C9 N2 PNT sing 280 n n 
C10 C8' PNT sing 281 n n 
C10 H101 PNT sing 282 n n 
C10 H102 PNT sing 283 n n 
C1' C2' PNT doub 284 n y 
C1' C6' PNT sing 285 n y 
C1' O1' PNT sing 286 n n 
C2' C3' PNT sing 287 n y 
C2' H2' PNT sing 288 n n 
C3' C4' PNT doub 289 n y 
C3' H3' PNT sing 290 n n 
C4' C5' PNT sing 291 n y 
C4' C9' PNT sing 292 n n 
C5' C6' PNT doub 293 n y 
C5' H5' PNT sing 294 n n 
C6' H6' PNT sing 295 n n 
C7' C8' PNT sing 296 n n 
C7' O1' PNT sing 297 n n 
C7' "H7'1" PNT sing 298 n n 
C7' "H7'2" PNT sing 299 n n 
C8' "H8'1" PNT sing 300 n n 
C8' "H8'2" PNT sing 301 n n 
C9' N1' PNT doub 302 n n 
C9' N2' PNT sing 303 n n 
N1 HN1 PNT sing 304 n n 
N2 HN2 PNT sing 305 n n 
N2 HN3 PNT sing 306 n n 
N1' "HN'1" PNT sing 307 n n 
N2' "HN'2" PNT sing 308 n n 
N2' "HN'3" PNT sing 309 n n 
#
_atom_sites.entry_id                     3CR4 
_atom_sites.fract_transf_matrix[1][1]    0.015726 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015726 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020726 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PNT X 1 101 101 PNT PNT . 
C 2 PNT X 1 102 101 PNT PNT . 
D 3 CA X 1 103 90 CA CA . 
E 3 CA X 1 104 91 CA CA . 
F 4 HOH X 1 105 1 HOH HOH . 
F 4 HOH X 2 106 2 HOH HOH . 
F 4 HOH X 3 107 3 HOH HOH . 
F 4 HOH X 4 108 4 HOH HOH . 
F 4 HOH X 5 109 5 HOH HOH . 
F 4 HOH X 6 110 6 HOH HOH . 
F 4 HOH X 7 111 7 HOH HOH . 
F 4 HOH X 8 112 8 HOH HOH . 
F 4 HOH X 9 113 9 HOH HOH . 
F 4 HOH X 10 114 10 HOH HOH . 
F 4 HOH X 11 115 11 HOH HOH . 
F 4 HOH X 12 116 12 HOH HOH . 
F 4 HOH X 13 117 13 HOH HOH . 
F 4 HOH X 14 118 14 HOH HOH . 
F 4 HOH X 15 119 15 HOH HOH . 
F 4 HOH X 16 120 16 HOH HOH . 
F 4 HOH X 17 121 17 HOH HOH . 
F 4 HOH X 18 122 18 HOH HOH . 
F 4 HOH X 19 123 19 HOH HOH . 
F 4 HOH X 20 124 20 HOH HOH . 
F 4 HOH X 21 125 21 HOH HOH . 
F 4 HOH X 22 126 22 HOH HOH . 
F 4 HOH X 23 127 23 HOH HOH . 
F 4 HOH X 24 128 24 HOH HOH . 
F 4 HOH X 25 129 25 HOH HOH . 
F 4 HOH X 26 130 26 HOH HOH . 
F 4 HOH X 27 131 27 HOH HOH . 
F 4 HOH X 28 132 28 HOH HOH . 
F 4 HOH X 29 133 29 HOH HOH . 
F 4 HOH X 30 134 30 HOH HOH . 
F 4 HOH X 31 135 31 HOH HOH . 
F 4 HOH X 32 136 32 HOH HOH . 
F 4 HOH X 33 137 33 HOH HOH . 
F 4 HOH X 34 138 34 HOH HOH . 
F 4 HOH X 35 139 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PNT . . . B 2 -0.678 2.685 23.737 0.5 45.59 ? C1 PNT 101 X 1 
HETATM 2 C C2 PNT . . . B 2 -1.628 2.848 22.727 0.5 45.41 ? C2 PNT 101 X 1 
HETATM 3 C C3 PNT . . . B 2 -2.665 1.922 22.585 0.5 45.63 ? C3 PNT 101 X 1 
HETATM 4 C C4 PNT . . . B 2 -2.764 0.827 23.451 0.5 45.7 ? C4 PNT 101 X 1 
HETATM 5 C C5 PNT . . . B 2 -1.812 0.674 24.458 0.5 45.73 ? C5 PNT 101 X 1 
HETATM 6 C C6 PNT . . . B 2 -0.776 1.595 24.603 0.5 45.57 ? C6 PNT 101 X 1 
HETATM 7 C C7 PNT . . . B 2 1.644 3.15 24.299 0.5 45.07 ? C7 PNT 101 X 1 
HETATM 8 C C8 PNT . . . B 2 2.733 4.185 24.016 0.5 44.23 ? C8 PNT 101 X 1 
HETATM 9 C C9 PNT . . . B 2 -3.887 -0.174 23.311 0.5 45.61 ? C9 PNT 101 X 1 
HETATM 10 C C10 PNT . . . B 2 4.084 3.512 23.773 0.5 43.26 ? C10 PNT 101 X 1 
HETATM 11 C C1' PNT . . . B 2 3.65 -0.424 25.058 0.5 40.56 ? C1' PNT 101 X 1 
HETATM 12 C C2' PNT . . . B 2 4.6 -1.279 25.607 0.5 40.1 ? C2' PNT 101 X 1 
HETATM 13 C C3' PNT . . . B 2 4.24 -2.549 26.045 0.5 39.98 ? C3' PNT 101 X 1 
HETATM 14 C C4' PNT . . . B 2 2.919 -2.978 25.948 0.5 40.28 ? C4' PNT 101 X 1 
HETATM 15 C C5' PNT . . . B 2 1.96 -2.125 25.396 0.5 40.14 ? C5' PNT 101 X 1 
HETATM 16 C C6' PNT . . . B 2 2.325 -0.853 24.951 0.5 40.31 ? C6' PNT 101 X 1 
HETATM 17 C C7' PNT . . . B 2 5.064 1.608 25.17 0.5 41.92 ? C7' PNT 101 X 1 
HETATM 18 C C8' PNT . . . B 2 4.766 3.106 25.079 0.5 42.61 ? C8' PNT 101 X 1 
HETATM 19 C C9' PNT . . . B 2 2.549 -4.354 26.433 0.5 40.31 ? C9' PNT 101 X 1 
HETATM 20 O O1 PNT . . . B 2 0.348 3.593 23.878 0.5 45.77 ? O1 PNT 101 X 1 
HETATM 21 O O1' PNT . . . B 2 3.999 0.83 24.611 0.5 41.2 ? O1' PNT 101 X 1 
HETATM 22 N N1 PNT . . . B 2 -3.874 -1.26 23.953 0.5 44.78 ? N1 PNT 101 X 1 
HETATM 23 N N2 PNT . . . B 2 -4.91 0.07 22.491 0.5 45.85 ? N2 PNT 101 X 1 
HETATM 24 N N1' PNT . . . B 2 3.402 -5.281 26.416 0.5 39.7 ? N1' PNT 101 X 1 
HETATM 25 N N2' PNT . . . B 2 1.323 -4.609 26.89 0.5 40 ? N2' PNT 101 X 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           25 
#