data_3CRL
#
_model_server_result.job_id            Hi6JaVVeh5X7rGuvo93yFA 
_model_server_result.datetime_utc      '2025-03-13 17:44:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3crl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1000}' 
#
_entry.id    3CRL 
#
_exptl.entry_id    3CRL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.29 
_cell.angle_gamma         90 
_cell.entry_id            3CRL 
_cell.length_a            71.413 
_cell.length_b            121.63 
_cell.length_c            71.452 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CRL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C ASP 45 C ASP 172 1_555 C N LA2 46 C LA2 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 C C LA2 46 C LA2 173 1_555 C N ALA 47 C ALA 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 D C ASP 45 D ASP 172 1_555 D N LA2 46 D LA2 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 D C LA2 46 D LA2 173 1_555 D N ALA 47 D ALA 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
metalc ? metalc1 A O SER 24 A SER 24 1_555 F K K . A K 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? 
metalc ? metalc2 A O PHE 26 A PHE 26 1_555 F K K . A K 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? 
metalc ? metalc3 A OD1 ASN 63 A ASN 63 1_555 F K K . A K 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? 
metalc ? metalc4 A OE1 GLU 251 A GLU 251 1_555 E MG MG . A MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc5 A OD1 ASN 255 A ASN 255 1_555 E MG MG . A MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc6 A O TYR 374 A TYR 374 1_555 F K K . A K 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc7 B O SER 24 B SER 24 1_555 I K K . B K 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? 
metalc ? metalc8 B O PHE 26 B PHE 26 1_555 I K K . B K 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? 
metalc ? metalc9 B OD1 ASN 255 B ASN 255 1_555 H MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc10 B O TYR 374 B TYR 374 1_555 I K K . B K 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc11 E MG MG . A MG 2000 1_555 G O3G ANP . A ANP 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? 
metalc ? metalc12 E MG MG . A MG 2000 1_555 G O2A ANP . A ANP 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc13 E MG MG . A MG 2000 1_555 G O1B ANP . A ANP 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc14 H MG MG . B MG 2001 1_555 J O3G ANP . B ANP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc15 H MG MG . B MG 2001 1_555 J O1B ANP . B ANP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc16 H MG MG . B MG 2001 1_555 J O2A ANP . B ANP 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3CRL 
_atom_sites.fract_transf_matrix[1][1]    0.014003 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00179 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008222 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014109 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MG A 1 2000 2000 MG MG . 
F 4 K A 1 3002 3002 K K . 
G 5 ANP A 1 1000 1000 ANP ANP . 
H 3 MG B 1 2001 2001 MG MG . 
I 4 K B 1 3001 3001 K K . 
J 5 ANP B 1 1001 1001 ANP ANP . 
K 6 HOH A 1 3003 1 HOH HOH . 
K 6 HOH A 2 3004 2 HOH HOH . 
K 6 HOH A 3 3005 3 HOH HOH . 
K 6 HOH A 4 3006 4 HOH HOH . 
K 6 HOH A 5 3007 6 HOH HOH . 
K 6 HOH A 6 3008 7 HOH HOH . 
K 6 HOH A 7 3009 8 HOH HOH . 
K 6 HOH A 8 3010 9 HOH HOH . 
K 6 HOH A 9 3011 10 HOH HOH . 
K 6 HOH A 10 3012 11 HOH HOH . 
K 6 HOH A 11 3013 12 HOH HOH . 
K 6 HOH A 12 3014 14 HOH HOH . 
K 6 HOH A 13 3015 15 HOH HOH . 
K 6 HOH A 14 3016 16 HOH HOH . 
K 6 HOH A 15 3017 17 HOH HOH . 
K 6 HOH A 16 3018 18 HOH HOH . 
K 6 HOH A 17 3019 19 HOH HOH . 
K 6 HOH A 18 3020 20 HOH HOH . 
K 6 HOH A 19 3021 21 HOH HOH . 
K 6 HOH A 20 3022 22 HOH HOH . 
K 6 HOH A 21 3023 23 HOH HOH . 
K 6 HOH A 22 3024 24 HOH HOH . 
K 6 HOH A 23 3025 25 HOH HOH . 
K 6 HOH A 24 3026 26 HOH HOH . 
K 6 HOH A 25 3027 27 HOH HOH . 
K 6 HOH A 26 3028 28 HOH HOH . 
K 6 HOH A 27 3029 30 HOH HOH . 
K 6 HOH A 28 3030 31 HOH HOH . 
K 6 HOH A 29 3031 32 HOH HOH . 
K 6 HOH A 30 3032 33 HOH HOH . 
K 6 HOH A 31 3033 51 HOH HOH . 
K 6 HOH A 32 3034 52 HOH HOH . 
K 6 HOH A 33 3035 54 HOH HOH . 
K 6 HOH A 34 3036 56 HOH HOH . 
K 6 HOH A 35 3037 57 HOH HOH . 
K 6 HOH A 36 3038 62 HOH HOH . 
K 6 HOH A 37 3039 65 HOH HOH . 
K 6 HOH A 38 3040 68 HOH HOH . 
K 6 HOH A 39 3041 72 HOH HOH . 
K 6 HOH A 40 3042 75 HOH HOH . 
K 6 HOH A 41 3043 80 HOH HOH . 
K 6 HOH A 42 3044 82 HOH HOH . 
K 6 HOH A 43 3045 84 HOH HOH . 
K 6 HOH A 44 3046 87 HOH HOH . 
K 6 HOH A 45 3047 89 HOH HOH . 
K 6 HOH A 46 3048 91 HOH HOH . 
K 6 HOH A 47 3049 92 HOH HOH . 
K 6 HOH A 48 3050 96 HOH HOH . 
K 6 HOH A 49 3051 97 HOH HOH . 
K 6 HOH A 50 3052 99 HOH HOH . 
K 6 HOH A 51 3053 100 HOH HOH . 
K 6 HOH A 52 3054 102 HOH HOH . 
K 6 HOH A 53 3055 104 HOH HOH . 
K 6 HOH A 54 3056 106 HOH HOH . 
K 6 HOH A 55 3057 113 HOH HOH . 
K 6 HOH A 56 3058 117 HOH HOH . 
K 6 HOH A 57 3059 119 HOH HOH . 
K 6 HOH A 58 3060 121 HOH HOH . 
K 6 HOH A 59 3061 122 HOH HOH . 
K 6 HOH A 60 3062 130 HOH HOH . 
K 6 HOH A 61 3063 131 HOH HOH . 
K 6 HOH A 62 3064 132 HOH HOH . 
K 6 HOH A 63 3065 133 HOH HOH . 
K 6 HOH A 64 3066 135 HOH HOH . 
K 6 HOH A 65 3067 136 HOH HOH . 
K 6 HOH A 66 3068 137 HOH HOH . 
K 6 HOH A 67 3069 138 HOH HOH . 
K 6 HOH A 68 3070 140 HOH HOH . 
K 6 HOH A 69 3071 67 HOH HOH . 
K 6 HOH A 70 3072 90 HOH HOH . 
L 6 HOH B 1 3041 70 HOH HOH . 
L 6 HOH B 2 3042 29 HOH HOH . 
L 6 HOH B 3 3043 34 HOH HOH . 
L 6 HOH B 4 3044 35 HOH HOH . 
L 6 HOH B 5 3045 36 HOH HOH . 
L 6 HOH B 6 3046 37 HOH HOH . 
L 6 HOH B 7 3047 38 HOH HOH . 
L 6 HOH B 8 3048 39 HOH HOH . 
L 6 HOH B 9 3049 40 HOH HOH . 
L 6 HOH B 10 3050 41 HOH HOH . 
L 6 HOH B 11 3051 42 HOH HOH . 
L 6 HOH B 12 3052 43 HOH HOH . 
L 6 HOH B 13 3053 44 HOH HOH . 
L 6 HOH B 14 3054 45 HOH HOH . 
L 6 HOH B 15 3055 46 HOH HOH . 
L 6 HOH B 16 3056 47 HOH HOH . 
L 6 HOH B 17 3057 48 HOH HOH . 
L 6 HOH B 18 3058 49 HOH HOH . 
L 6 HOH B 19 3059 50 HOH HOH . 
L 6 HOH B 20 3060 55 HOH HOH . 
L 6 HOH B 21 3061 58 HOH HOH . 
L 6 HOH B 22 3062 59 HOH HOH . 
L 6 HOH B 23 3063 60 HOH HOH . 
L 6 HOH B 24 3064 61 HOH HOH . 
L 6 HOH B 25 3065 63 HOH HOH . 
L 6 HOH B 26 3066 64 HOH HOH . 
L 6 HOH B 27 3067 71 HOH HOH . 
L 6 HOH B 28 3068 73 HOH HOH . 
L 6 HOH B 29 3069 74 HOH HOH . 
L 6 HOH B 30 3070 77 HOH HOH . 
L 6 HOH B 31 3071 78 HOH HOH . 
L 6 HOH B 32 3072 79 HOH HOH . 
L 6 HOH B 33 3073 81 HOH HOH . 
L 6 HOH B 34 3074 83 HOH HOH . 
L 6 HOH B 35 3075 85 HOH HOH . 
L 6 HOH B 36 3076 86 HOH HOH . 
L 6 HOH B 37 3077 93 HOH HOH . 
L 6 HOH B 38 3078 94 HOH HOH . 
L 6 HOH B 39 3079 98 HOH HOH . 
L 6 HOH B 40 3080 101 HOH HOH . 
L 6 HOH B 41 3081 103 HOH HOH . 
L 6 HOH B 42 3082 107 HOH HOH . 
L 6 HOH B 43 3083 109 HOH HOH . 
L 6 HOH B 44 3084 111 HOH HOH . 
L 6 HOH B 45 3085 112 HOH HOH . 
L 6 HOH B 46 3086 114 HOH HOH . 
L 6 HOH B 47 3087 115 HOH HOH . 
L 6 HOH B 48 3088 116 HOH HOH . 
L 6 HOH B 49 3089 118 HOH HOH . 
L 6 HOH B 50 3090 120 HOH HOH . 
L 6 HOH B 51 3091 123 HOH HOH . 
L 6 HOH B 52 3092 124 HOH HOH . 
L 6 HOH B 53 3093 126 HOH HOH . 
L 6 HOH B 54 3094 127 HOH HOH . 
L 6 HOH B 55 3095 128 HOH HOH . 
L 6 HOH B 56 3096 129 HOH HOH . 
L 6 HOH B 57 3097 134 HOH HOH . 
L 6 HOH B 58 3098 139 HOH HOH . 
L 6 HOH B 59 3099 142 HOH HOH . 
M 6 HOH C 1 5 5 HOH HOH . 
M 6 HOH C 2 13 13 HOH HOH . 
M 6 HOH C 3 53 53 HOH HOH . 
M 6 HOH C 4 69 69 HOH HOH . 
M 6 HOH C 5 76 76 HOH HOH . 
M 6 HOH C 6 88 88 HOH HOH . 
M 6 HOH C 7 108 108 HOH HOH . 
M 6 HOH C 8 110 110 HOH HOH . 
N 6 HOH D 1 215 66 HOH HOH . 
N 6 HOH D 2 216 95 HOH HOH . 
N 6 HOH D 3 217 105 HOH HOH . 
N 6 HOH D 4 218 125 HOH HOH . 
N 6 HOH D 5 219 141 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . G 5 54.17 115.624 55.025 1 57.63 ? PG ANP 1000 A 1 
HETATM 2 O O1G ANP . . . G 5 55.303 115.573 56.019 1 57.31 ? O1G ANP 1000 A 1 
HETATM 3 O O2G ANP . . . G 5 52.797 115.393 55.605 1 58.4 ? O2G ANP 1000 A 1 
HETATM 4 O O3G ANP . . . G 5 54.467 114.77 53.818 1 58.64 ? O3G ANP 1000 A 1 
HETATM 5 P PB ANP . . . G 5 55.288 117.787 53.265 1 55.07 ? PB ANP 1000 A 1 
HETATM 6 O O1B ANP . . . G 5 54.845 117.412 51.87 1 55.31 ? O1B ANP 1000 A 1 
HETATM 7 O O2B ANP . . . G 5 55.623 119.234 53.536 1 56.03 ? O2B ANP 1000 A 1 
HETATM 8 N N3B ANP . . . G 5 54.082 117.258 54.407 1 56.27 ? N3B ANP 1000 A 1 
HETATM 9 P PA ANP . . . G 5 57.545 116.202 52.563 1 55.65 ? PA ANP 1000 A 1 
HETATM 10 O O1A ANP . . . G 5 58.752 115.694 53.33 1 55.46 ? O1A ANP 1000 A 1 
HETATM 11 O O2A ANP . . . G 5 56.71 115.247 51.752 1 54.61 ? O2A ANP 1000 A 1 
HETATM 12 O O3A ANP . . . G 5 56.606 116.947 53.642 1 56.08 ? O3A ANP 1000 A 1 
HETATM 13 O O5' ANP . . . G 5 58.003 117.42 51.626 1 54.17 ? O5' ANP 1000 A 1 
HETATM 14 C C5' ANP . . . G 5 58.847 118.441 52.158 1 52.8 ? C5' ANP 1000 A 1 
HETATM 15 C C4' ANP . . . G 5 58.806 119.636 51.219 1 51.69 ? C4' ANP 1000 A 1 
HETATM 16 O O4' ANP . . . G 5 59.474 119.305 50.006 1 51.43 ? O4' ANP 1000 A 1 
HETATM 17 C C3' ANP . . . G 5 57.397 119.983 50.78 1 51.42 ? C3' ANP 1000 A 1 
HETATM 18 O O3' ANP . . . G 5 56.758 120.846 51.725 1 52.2 ? O3' ANP 1000 A 1 
HETATM 19 C C2' ANP . . . G 5 57.585 120.603 49.408 1 50.97 ? C2' ANP 1000 A 1 
HETATM 20 O O2' ANP . . . G 5 57.849 122.01 49.469 1 51.06 ? O2' ANP 1000 A 1 
HETATM 21 C C1' ANP . . . G 5 58.837 119.934 48.885 1 49.52 ? C1' ANP 1000 A 1 
HETATM 22 N N9 ANP . . . G 5 58.447 118.932 47.863 1 47.79 ? N9 ANP 1000 A 1 
HETATM 23 C C8 ANP . . . G 5 58.381 117.597 48.035 1 46.9 ? C8 ANP 1000 A 1 
HETATM 24 N N7 ANP . . . G 5 57.986 116.98 46.893 1 45.75 ? N7 ANP 1000 A 1 
HETATM 25 C C5 ANP . . . G 5 57.79 117.931 45.967 1 45.3 ? C5 ANP 1000 A 1 
HETATM 26 C C6 ANP . . . G 5 57.366 117.969 44.555 1 45.17 ? C6 ANP 1000 A 1 
HETATM 27 N N6 ANP . . . G 5 57.059 116.827 43.892 1 46.14 ? N6 ANP 1000 A 1 
HETATM 28 N N1 ANP . . . G 5 57.294 119.183 43.954 1 45.04 ? N1 ANP 1000 A 1 
HETATM 29 C C2 ANP . . . G 5 57.586 120.331 44.595 1 44.73 ? C2 ANP 1000 A 1 
HETATM 30 N N3 ANP . . . G 5 57.973 120.368 45.883 1 45.46 ? N3 ANP 1000 A 1 
HETATM 31 C C4 ANP . . . G 5 58.095 119.221 46.606 1 46.17 ? C4 ANP 1000 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           31 
#