data_3CS7 # _model_server_result.job_id VPBs80hEqbtG6G1gCTknaQ _model_server_result.datetime_utc '2024-11-21 23:11:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cs7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":298}' # _entry.id 3CS7 # _exptl.entry_id 3CS7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.551 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(4-methoxyphenyl)-6-(4-(1-(pyrrolidin-1-ylmethyl)cyclopropyl)phenyl)-3-(trifluoromethyl)-5,6-dihydro-1H-pyrazolo[3,4-c]pyridin-7(4H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CS7 _cell.length_a 56.5 _cell.length_b 72.6 _cell.length_c 79 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CS7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 46 L CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? disulf ? disulf6 B SG CYS 3 L CYS 89 1_555 B SG CYS 14 L CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? disulf ? disulf7 B SG CYS 10 L CYS 96 1_555 B SG CYS 23 L CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? disulf ? disulf8 B SG CYS 25 L CYS 111 1_555 B SG CYS 38 L CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc1 A OD2 ASP 56 A ASP 70 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc2 A O ASN 58 A ASN 72 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc3 A O GLN 61 A GLN 75 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc4 A OE2 GLU 66 A GLU 80 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc5 C CA CA . A CA 301 1_555 E O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? # _chem_comp.formula 'C28 H29 F3 N4 O2' _chem_comp.formula_weight 510.551 _chem_comp.id LG0 _chem_comp.mon_nstd_flag . _chem_comp.name 1-(4-methoxyphenyl)-6-(4-(1-(pyrrolidin-1-ylmethyl)cyclopropyl)phenyl)-3-(trifluoromethyl)-5,6-dihydro-1H-pyrazolo[3,4-c]pyridin-7(4H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C13 LG0 sing 194 n n C13 C12 LG0 doub 195 n y C13 N1 LG0 sing 196 n y C16 C18 LG0 doub 197 n y C18 C22 LG0 sing 198 n y C18 H18 LG0 sing 199 n n C23 C17 LG0 sing 200 n n C21 C17 LG0 sing 201 n n C17 C9 LG0 sing 202 n n C17 C16 LG0 sing 203 n n C14 C16 LG0 sing 204 n y O1 C15 LG0 sing 205 n n C15 H15 LG0 sing 206 n n C15 H15A LG0 sing 207 n n C15 H15B LG0 sing 208 n n C20 C19 LG0 sing 209 n n C19 C12 LG0 sing 210 n n C19 H19 LG0 sing 211 n n C19 H19A LG0 sing 212 n n N5 C20 LG0 sing 213 n n C20 H20 LG0 sing 214 n n C20 H20A LG0 sing 215 n n C21 C9 LG0 sing 216 n n C21 H21 LG0 sing 217 n n C21 H21A LG0 sing 218 n n C7 C22 LG0 doub 219 n y C22 H22 LG0 sing 220 n n N2 C23 LG0 sing 221 n n C23 H23 LG0 sing 222 n n C23 H23A LG0 sing 223 n n F2 C11 LG0 sing 224 n n C10 C11 LG0 sing 225 n n C11 F3 LG0 sing 226 n n C11 F1 LG0 sing 227 n n C12 C10 LG0 sing 228 n y C30 C27 LG0 sing 229 n n C27 N2 LG0 sing 230 n n C27 H27 LG0 sing 231 n n C27 H27A LG0 sing 232 n n C2 C1 LG0 doub 233 n y C1 O1 LG0 sing 234 n n C1 C6 LG0 sing 235 n y C3 C2 LG0 sing 236 n y C2 H2 LG0 sing 237 n n C3 C4 LG0 doub 238 n y C3 H3 LG0 sing 239 n n N1 C4 LG0 sing 240 n y C4 C5 LG0 sing 241 n y C5 C6 LG0 doub 242 n y C5 H5 LG0 sing 243 n n C6 H6 LG0 sing 244 n n N1 N6 LG0 sing 245 n y C10 N6 LG0 doub 246 n y C7 N5 LG0 sing 247 n n N5 C8 LG0 sing 248 n n C44 C7 LG0 sing 249 n y C14 C44 LG0 doub 250 n y C44 H44 LG0 sing 251 n n C14 H14 LG0 sing 252 n n O3 C8 LG0 doub 253 n n C9 H9 LG0 sing 254 n n C9 H9A LG0 sing 255 n n C25 N2 LG0 sing 256 n n C29 C25 LG0 sing 257 n n C25 H25 LG0 sing 258 n n C25 H25A LG0 sing 259 n n C30 C29 LG0 sing 260 n n C29 H29 LG0 sing 261 n n C29 H29A LG0 sing 262 n n C30 H30 LG0 sing 263 n n C30 H30A LG0 sing 264 n n # _atom_sites.entry_id 3CS7 _atom_sites.fract_transf_matrix[1][1] 0.017699 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013774 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012658 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 301 301 CA CA . D 4 LG0 A 1 298 298 LG0 LG0 . E 5 HOH A 1 302 1 HOH HOH . E 5 HOH A 2 303 4 HOH HOH . E 5 HOH A 3 304 6 HOH HOH . E 5 HOH A 4 305 7 HOH HOH . E 5 HOH A 5 306 9 HOH HOH . E 5 HOH A 6 307 10 HOH HOH . E 5 HOH A 7 308 11 HOH HOH . E 5 HOH A 8 309 12 HOH HOH . E 5 HOH A 9 310 13 HOH HOH . E 5 HOH A 10 311 14 HOH HOH . E 5 HOH A 11 312 15 HOH HOH . E 5 HOH A 12 313 16 HOH HOH . E 5 HOH A 13 314 20 HOH HOH . E 5 HOH A 14 315 22 HOH HOH . E 5 HOH A 15 316 23 HOH HOH . E 5 HOH A 16 317 24 HOH HOH . E 5 HOH A 17 318 25 HOH HOH . E 5 HOH A 18 319 26 HOH HOH . E 5 HOH A 19 320 28 HOH HOH . E 5 HOH A 20 321 29 HOH HOH . E 5 HOH A 21 322 31 HOH HOH . E 5 HOH A 22 323 32 HOH HOH . E 5 HOH A 23 324 34 HOH HOH . E 5 HOH A 24 325 35 HOH HOH . E 5 HOH A 25 326 36 HOH HOH . E 5 HOH A 26 327 37 HOH HOH . E 5 HOH A 27 328 44 HOH HOH . E 5 HOH A 28 329 45 HOH HOH . E 5 HOH A 29 330 46 HOH HOH . E 5 HOH A 30 331 47 HOH HOH . E 5 HOH A 31 332 48 HOH HOH . E 5 HOH A 32 333 50 HOH HOH . E 5 HOH A 33 334 51 HOH HOH . E 5 HOH A 34 335 53 HOH HOH . E 5 HOH A 35 336 54 HOH HOH . E 5 HOH A 36 337 55 HOH HOH . E 5 HOH A 37 338 56 HOH HOH . E 5 HOH A 38 339 59 HOH HOH . E 5 HOH A 39 340 60 HOH HOH . E 5 HOH A 40 341 62 HOH HOH . E 5 HOH A 41 342 63 HOH HOH . E 5 HOH A 42 343 65 HOH HOH . E 5 HOH A 43 344 66 HOH HOH . E 5 HOH A 44 345 67 HOH HOH . E 5 HOH A 45 346 68 HOH HOH . E 5 HOH A 46 347 69 HOH HOH . E 5 HOH A 47 348 71 HOH HOH . E 5 HOH A 48 349 72 HOH HOH . E 5 HOH A 49 350 73 HOH HOH . E 5 HOH A 50 351 74 HOH HOH . E 5 HOH A 51 352 76 HOH HOH . E 5 HOH A 52 353 77 HOH HOH . E 5 HOH A 53 354 79 HOH HOH . E 5 HOH A 54 355 80 HOH HOH . E 5 HOH A 55 356 81 HOH HOH . E 5 HOH A 56 357 82 HOH HOH . E 5 HOH A 57 358 83 HOH HOH . E 5 HOH A 58 359 84 HOH HOH . E 5 HOH A 59 360 85 HOH HOH . E 5 HOH A 60 361 86 HOH HOH . E 5 HOH A 61 362 87 HOH HOH . E 5 HOH A 62 363 88 HOH HOH . E 5 HOH A 63 364 89 HOH HOH . E 5 HOH A 64 365 90 HOH HOH . E 5 HOH A 65 366 91 HOH HOH . E 5 HOH A 66 367 92 HOH HOH . E 5 HOH A 67 368 93 HOH HOH . E 5 HOH A 68 369 94 HOH HOH . E 5 HOH A 69 370 97 HOH HOH . E 5 HOH A 70 371 99 HOH HOH . E 5 HOH A 71 372 100 HOH HOH . E 5 HOH A 72 373 101 HOH HOH . E 5 HOH A 73 374 103 HOH HOH . E 5 HOH A 74 375 105 HOH HOH . E 5 HOH A 75 376 106 HOH HOH . E 5 HOH A 76 377 107 HOH HOH . E 5 HOH A 77 378 108 HOH HOH . E 5 HOH A 78 379 109 HOH HOH . E 5 HOH A 79 380 110 HOH HOH . E 5 HOH A 80 381 111 HOH HOH . E 5 HOH A 81 382 112 HOH HOH . E 5 HOH A 82 383 114 HOH HOH . E 5 HOH A 83 384 115 HOH HOH . E 5 HOH A 84 385 117 HOH HOH . E 5 HOH A 85 386 118 HOH HOH . E 5 HOH A 86 387 120 HOH HOH . E 5 HOH A 87 388 122 HOH HOH . E 5 HOH A 88 389 123 HOH HOH . E 5 HOH A 89 390 125 HOH HOH . E 5 HOH A 90 391 70 HOH HOH . F 5 HOH L 1 139 2 HOH HOH . F 5 HOH L 2 140 3 HOH HOH . F 5 HOH L 3 141 5 HOH HOH . F 5 HOH L 4 142 17 HOH HOH . F 5 HOH L 5 143 18 HOH HOH . F 5 HOH L 6 144 21 HOH HOH . F 5 HOH L 7 145 27 HOH HOH . F 5 HOH L 8 146 33 HOH HOH . F 5 HOH L 9 147 38 HOH HOH . F 5 HOH L 10 148 39 HOH HOH . F 5 HOH L 11 149 40 HOH HOH . F 5 HOH L 12 150 41 HOH HOH . F 5 HOH L 13 151 43 HOH HOH . F 5 HOH L 14 152 49 HOH HOH . F 5 HOH L 15 153 52 HOH HOH . F 5 HOH L 16 154 57 HOH HOH . F 5 HOH L 17 155 58 HOH HOH . F 5 HOH L 18 156 61 HOH HOH . F 5 HOH L 19 157 64 HOH HOH . F 5 HOH L 20 159 75 HOH HOH . F 5 HOH L 21 160 95 HOH HOH . F 5 HOH L 22 161 96 HOH HOH . F 5 HOH L 23 162 98 HOH HOH . F 5 HOH L 24 163 102 HOH HOH . F 5 HOH L 25 164 104 HOH HOH . F 5 HOH L 26 165 116 HOH HOH . F 5 HOH L 27 166 119 HOH HOH . F 5 HOH L 28 306 8 HOH HOH . F 5 HOH L 29 355 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 LG0 . . . D 4 6.492 44.295 62.9 1 39.95 ? C13 LG0 298 A 1 HETATM 2 C C18 LG0 . . . D 4 7.178 39.426 59.571 1 38.98 ? C18 LG0 298 A 1 HETATM 3 C C17 LG0 . . . D 4 8.369 38.947 57.415 1 41.97 ? C17 LG0 298 A 1 HETATM 4 C C16 LG0 . . . D 4 7.834 39.965 58.392 1 40.21 ? C16 LG0 298 A 1 HETATM 5 C C15 LG0 . . . D 4 13.002 44.088 66.619 1 30.96 ? C15 LG0 298 A 1 HETATM 6 C C19 LG0 . . . D 4 4.211 43.935 61.92 1 41.14 ? C19 LG0 298 A 1 HETATM 7 C C20 LG0 . . . D 4 4.79 42.574 61.553 1 40.64 ? C20 LG0 298 A 1 HETATM 8 C C21 LG0 . . . D 4 9.764 39.012 56.802 1 42.49 ? C21 LG0 298 A 1 HETATM 9 C C22 LG0 . . . D 4 6.615 40.354 60.507 1 40.03 ? C22 LG0 298 A 1 HETATM 10 C C23 LG0 . . . D 4 7.508 38.097 56.517 1 44 ? C23 LG0 298 A 1 HETATM 11 C C11 LG0 . . . D 4 3.468 45.887 64.467 1 42.79 ? C11 LG0 298 A 1 HETATM 12 C C12 LG0 . . . D 4 5.118 44.531 62.953 1 40.03 ? C12 LG0 298 A 1 HETATM 13 C C27 LG0 . . . D 4 6.672 39.555 54.715 1 46.83 ? C27 LG0 298 A 1 HETATM 14 C C1 LG0 . . . D 4 11.082 44.915 65.308 1 31.49 ? C1 LG0 298 A 1 HETATM 15 C C2 LG0 . . . D 4 10.674 45.954 64.348 1 31.37 ? C2 LG0 298 A 1 HETATM 16 C C3 LG0 . . . D 4 9.293 46.016 63.893 1 32.74 ? C3 LG0 298 A 1 HETATM 17 C C4 LG0 . . . D 4 8.347 45.02 64.412 1 34.98 ? C4 LG0 298 A 1 HETATM 18 C C5 LG0 . . . D 4 8.73 44.019 65.422 1 35.18 ? C5 LG0 298 A 1 HETATM 19 C C6 LG0 . . . D 4 10.111 43.959 65.876 1 32.63 ? C6 LG0 298 A 1 HETATM 20 N N1 LG0 . . . D 4 7.035 44.982 63.955 1 37.71 ? N1 LG0 298 A 1 HETATM 21 N N6 LG0 . . . D 4 6.017 45.614 64.626 1 38.75 ? N6 LG0 298 A 1 HETATM 22 N N5 LG0 . . . D 4 6.235 42.643 61.202 1 40.26 ? N5 LG0 298 A 1 HETATM 23 C C7 LG0 . . . D 4 6.734 41.789 60.237 1 39.67 ? C7 LG0 298 A 1 HETATM 24 C C44 LG0 . . . D 4 7.394 42.336 59.043 1 39.69 ? C44 LG0 298 A 1 HETATM 25 C C14 LG0 . . . D 4 7.972 41.391 58.1 1 40.24 ? C14 LG0 298 A 1 HETATM 26 C C8 LG0 . . . D 4 7.084 43.452 61.943 1 40.02 ? C8 LG0 298 A 1 HETATM 27 C C10 LG0 . . . D 4 4.843 45.366 64.048 1 41.1 ? C10 LG0 298 A 1 HETATM 28 O O3 LG0 . . . D 4 8.304 43.446 61.802 1 40.74 ? O3 LG0 298 A 1 HETATM 29 F F1 LG0 . . . D 4 3.599 46.926 65.318 1 43.74 ? F1 LG0 298 A 1 HETATM 30 F F2 LG0 . . . D 4 2.814 46.282 63.386 1 42.2 ? F2 LG0 298 A 1 HETATM 31 F F3 LG0 . . . D 4 2.848 44.88 65.079 1 43.39 ? F3 LG0 298 A 1 HETATM 32 O O1 LG0 . . . D 4 12.44 44.931 65.623 1 31.49 ? O1 LG0 298 A 1 HETATM 33 C C9 LG0 . . . D 4 9.496 38.009 57.879 1 41.27 ? C9 LG0 298 A 1 HETATM 34 N N2 LG0 . . . D 4 6.377 38.88 55.997 1 46.51 ? N2 LG0 298 A 1 HETATM 35 C C25 LG0 . . . D 4 5.169 38.044 55.736 1 47.68 ? C25 LG0 298 A 1 HETATM 36 C C29 LG0 . . . D 4 5.026 38.048 54.225 1 47.32 ? C29 LG0 298 A 1 HETATM 37 C C30 LG0 . . . D 4 5.341 39.512 53.982 1 47.77 ? C30 LG0 298 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 37 #