data_3CSD # _model_server_result.job_id GG2IQifua5b9FwReHZib5A _model_server_result.datetime_utc '2024-10-12 23:25:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3csd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":303}' # _entry.id 3CSD # _exptl.entry_id 3CSD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.237 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-METHYL-1,6,8-TRIHYDROXYANTHRAQUINONE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3CSD _cell.length_a 105.089 _cell.length_b 105.089 _cell.length_c 123.65 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CSD _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1,2 A,B,C,D,E,F,G,H,I,J 2 1 A,C,D,E,I 3 2 B,F,G,H,J 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_643 y+1,x-1,-z-2 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 157.6335 -91.009744 -247.3 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C15 H10 O5' _chem_comp.formula_weight 270.237 _chem_comp.id EMO _chem_comp.mon_nstd_flag . _chem_comp.name 3-METHYL-1,6,8-TRIHYDROXYANTHRAQUINONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms EMODIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EMO sing 83 n n C1 C2 EMO doub 84 n y C1 C20 EMO sing 85 n y O1 HO1 EMO sing 86 n n C2 C3 EMO sing 87 n y C2 H2 EMO sing 88 n n C3 O3 EMO sing 89 n n C3 C4 EMO doub 90 n y O3 HO3 EMO sing 91 n n C4 C5 EMO sing 92 n y C4 H4 EMO sing 93 n n C5 C6 EMO sing 94 n n C5 C20 EMO doub 95 n y C6 O6 EMO doub 96 n n C6 C7 EMO sing 97 n n C7 C8 EMO doub 98 n y C7 C18 EMO sing 99 n y C8 C9 EMO sing 100 n y C8 H8 EMO sing 101 n n C9 C10 EMO sing 102 n n C9 C16 EMO doub 103 n y C10 H101 EMO sing 104 n n C10 H102 EMO sing 105 n n C10 H103 EMO sing 106 n n C16 C17 EMO sing 107 n y C16 H16 EMO sing 108 n n C17 O17 EMO sing 109 n n C17 C18 EMO doub 110 n y O17 H17 EMO sing 111 n n C18 C19 EMO sing 112 n n C19 O19 EMO doub 113 n n C19 C20 EMO sing 114 n n # _atom_sites.entry_id 3CSD _atom_sites.fract_transf_matrix[1][1] 0.009516 _atom_sites.fract_transf_matrix[1][2] 0.005494 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008087 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP B 1 301 301 NDP NDP . D 3 EMO B 1 302 302 EMO EMO . E 3 EMO B 1 303 303 EMO EMO . F 2 NDP A 1 301 301 NDP NDP . G 3 EMO A 1 302 302 EMO EMO . H 3 EMO A 1 303 303 EMO EMO . I 4 HOH B 1 304 304 HOH HOH . I 4 HOH B 2 305 305 HOH HOH . I 4 HOH B 3 306 306 HOH HOH . I 4 HOH B 4 307 307 HOH HOH . I 4 HOH B 5 308 308 HOH HOH . I 4 HOH B 6 309 309 HOH HOH . I 4 HOH B 7 310 310 HOH HOH . I 4 HOH B 8 311 311 HOH HOH . I 4 HOH B 9 312 312 HOH HOH . I 4 HOH B 10 313 313 HOH HOH . I 4 HOH B 11 314 314 HOH HOH . I 4 HOH B 12 315 315 HOH HOH . I 4 HOH B 13 316 316 HOH HOH . I 4 HOH B 14 317 317 HOH HOH . I 4 HOH B 15 318 318 HOH HOH . I 4 HOH B 16 319 319 HOH HOH . I 4 HOH B 17 320 320 HOH HOH . I 4 HOH B 18 321 321 HOH HOH . I 4 HOH B 19 322 322 HOH HOH . I 4 HOH B 20 323 323 HOH HOH . I 4 HOH B 21 324 324 HOH HOH . I 4 HOH B 22 325 325 HOH HOH . I 4 HOH B 23 326 326 HOH HOH . I 4 HOH B 24 327 327 HOH HOH . I 4 HOH B 25 328 328 HOH HOH . I 4 HOH B 26 329 329 HOH HOH . I 4 HOH B 27 330 330 HOH HOH . I 4 HOH B 28 331 331 HOH HOH . I 4 HOH B 29 332 332 HOH HOH . I 4 HOH B 30 333 333 HOH HOH . I 4 HOH B 31 334 334 HOH HOH . I 4 HOH B 32 335 335 HOH HOH . I 4 HOH B 33 336 336 HOH HOH . I 4 HOH B 34 337 337 HOH HOH . I 4 HOH B 35 338 338 HOH HOH . I 4 HOH B 36 339 339 HOH HOH . I 4 HOH B 37 340 340 HOH HOH . I 4 HOH B 38 341 341 HOH HOH . I 4 HOH B 39 342 342 HOH HOH . I 4 HOH B 40 343 343 HOH HOH . I 4 HOH B 41 344 344 HOH HOH . I 4 HOH B 42 345 345 HOH HOH . I 4 HOH B 43 346 346 HOH HOH . I 4 HOH B 44 347 347 HOH HOH . I 4 HOH B 45 348 348 HOH HOH . I 4 HOH B 46 349 349 HOH HOH . I 4 HOH B 47 350 350 HOH HOH . I 4 HOH B 48 351 351 HOH HOH . I 4 HOH B 49 352 352 HOH HOH . I 4 HOH B 50 353 353 HOH HOH . I 4 HOH B 51 354 354 HOH HOH . I 4 HOH B 52 355 355 HOH HOH . I 4 HOH B 53 356 356 HOH HOH . I 4 HOH B 54 357 357 HOH HOH . I 4 HOH B 55 358 358 HOH HOH . I 4 HOH B 56 359 359 HOH HOH . I 4 HOH B 57 360 360 HOH HOH . I 4 HOH B 58 361 361 HOH HOH . I 4 HOH B 59 362 362 HOH HOH . I 4 HOH B 60 363 363 HOH HOH . I 4 HOH B 61 364 364 HOH HOH . I 4 HOH B 62 365 365 HOH HOH . I 4 HOH B 63 366 366 HOH HOH . I 4 HOH B 64 367 367 HOH HOH . I 4 HOH B 65 368 368 HOH HOH . I 4 HOH B 66 369 369 HOH HOH . I 4 HOH B 67 370 370 HOH HOH . I 4 HOH B 68 371 371 HOH HOH . I 4 HOH B 69 372 372 HOH HOH . I 4 HOH B 70 373 373 HOH HOH . I 4 HOH B 71 374 374 HOH HOH . I 4 HOH B 72 375 375 HOH HOH . I 4 HOH B 73 376 376 HOH HOH . I 4 HOH B 74 377 377 HOH HOH . I 4 HOH B 75 378 378 HOH HOH . I 4 HOH B 76 379 379 HOH HOH . I 4 HOH B 77 380 380 HOH HOH . I 4 HOH B 78 381 381 HOH HOH . I 4 HOH B 79 382 382 HOH HOH . I 4 HOH B 80 383 383 HOH HOH . I 4 HOH B 81 384 384 HOH HOH . I 4 HOH B 82 385 385 HOH HOH . I 4 HOH B 83 386 386 HOH HOH . I 4 HOH B 84 387 387 HOH HOH . I 4 HOH B 85 388 388 HOH HOH . I 4 HOH B 86 389 389 HOH HOH . I 4 HOH B 87 390 390 HOH HOH . I 4 HOH B 88 391 391 HOH HOH . I 4 HOH B 89 392 392 HOH HOH . I 4 HOH B 90 393 393 HOH HOH . J 4 HOH A 1 304 304 HOH HOH . J 4 HOH A 2 305 305 HOH HOH . J 4 HOH A 3 306 306 HOH HOH . J 4 HOH A 4 307 307 HOH HOH . J 4 HOH A 5 308 308 HOH HOH . J 4 HOH A 6 309 309 HOH HOH . J 4 HOH A 7 310 310 HOH HOH . J 4 HOH A 8 311 311 HOH HOH . J 4 HOH A 9 312 312 HOH HOH . J 4 HOH A 10 313 313 HOH HOH . J 4 HOH A 11 314 314 HOH HOH . J 4 HOH A 12 315 315 HOH HOH . J 4 HOH A 13 316 316 HOH HOH . J 4 HOH A 14 317 317 HOH HOH . J 4 HOH A 15 318 318 HOH HOH . J 4 HOH A 16 319 319 HOH HOH . J 4 HOH A 17 320 320 HOH HOH . J 4 HOH A 18 321 321 HOH HOH . J 4 HOH A 19 322 322 HOH HOH . J 4 HOH A 20 323 323 HOH HOH . J 4 HOH A 21 324 324 HOH HOH . J 4 HOH A 22 325 325 HOH HOH . J 4 HOH A 23 326 326 HOH HOH . J 4 HOH A 24 327 327 HOH HOH . J 4 HOH A 25 328 328 HOH HOH . J 4 HOH A 26 329 329 HOH HOH . J 4 HOH A 27 330 330 HOH HOH . J 4 HOH A 28 331 331 HOH HOH . J 4 HOH A 29 332 332 HOH HOH . J 4 HOH A 30 333 333 HOH HOH . J 4 HOH A 31 334 334 HOH HOH . J 4 HOH A 32 335 335 HOH HOH . J 4 HOH A 33 336 336 HOH HOH . J 4 HOH A 34 337 337 HOH HOH . J 4 HOH A 35 338 338 HOH HOH . J 4 HOH A 36 339 339 HOH HOH . J 4 HOH A 37 340 340 HOH HOH . J 4 HOH A 38 341 341 HOH HOH . J 4 HOH A 39 342 342 HOH HOH . J 4 HOH A 40 343 343 HOH HOH . J 4 HOH A 41 344 344 HOH HOH . J 4 HOH A 42 345 345 HOH HOH . J 4 HOH A 43 346 346 HOH HOH . J 4 HOH A 44 347 347 HOH HOH . J 4 HOH A 45 348 348 HOH HOH . J 4 HOH A 46 349 349 HOH HOH . J 4 HOH A 47 350 350 HOH HOH . J 4 HOH A 48 351 351 HOH HOH . J 4 HOH A 49 352 352 HOH HOH . J 4 HOH A 50 353 353 HOH HOH . J 4 HOH A 51 354 354 HOH HOH . J 4 HOH A 52 355 355 HOH HOH . J 4 HOH A 53 356 356 HOH HOH . J 4 HOH A 54 357 357 HOH HOH . J 4 HOH A 55 358 358 HOH HOH . J 4 HOH A 56 359 359 HOH HOH . J 4 HOH A 57 360 360 HOH HOH . J 4 HOH A 58 361 361 HOH HOH . J 4 HOH A 59 362 362 HOH HOH . J 4 HOH A 60 363 363 HOH HOH . J 4 HOH A 61 364 364 HOH HOH . J 4 HOH A 62 365 365 HOH HOH . J 4 HOH A 63 366 366 HOH HOH . J 4 HOH A 64 367 367 HOH HOH . J 4 HOH A 65 368 368 HOH HOH . J 4 HOH A 66 369 369 HOH HOH . J 4 HOH A 67 370 370 HOH HOH . J 4 HOH A 68 371 371 HOH HOH . J 4 HOH A 69 372 372 HOH HOH . J 4 HOH A 70 373 373 HOH HOH . J 4 HOH A 71 374 374 HOH HOH . J 4 HOH A 72 375 375 HOH HOH . J 4 HOH A 73 376 376 HOH HOH . J 4 HOH A 74 377 377 HOH HOH . J 4 HOH A 75 378 378 HOH HOH . J 4 HOH A 76 379 379 HOH HOH . J 4 HOH A 77 380 380 HOH HOH . J 4 HOH A 78 381 381 HOH HOH . J 4 HOH A 79 382 382 HOH HOH . J 4 HOH A 80 383 383 HOH HOH . J 4 HOH A 81 384 384 HOH HOH . J 4 HOH A 82 385 385 HOH HOH . J 4 HOH A 83 386 386 HOH HOH . J 4 HOH A 84 387 387 HOH HOH . J 4 HOH A 85 388 388 HOH HOH . J 4 HOH A 86 389 389 HOH HOH . J 4 HOH A 87 390 390 HOH HOH . J 4 HOH A 88 391 391 HOH HOH . J 4 HOH A 89 392 392 HOH HOH . J 4 HOH A 90 393 393 HOH HOH . J 4 HOH A 91 394 394 HOH HOH . J 4 HOH A 92 395 395 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EMO . . . H 3 130.249 47.798 -116.838 1 53.14 ? C1 EMO 303 A 1 HETATM 2 O O1 EMO . . . H 3 131.198 48.774 -116.801 1 54.53 ? O1 EMO 303 A 1 HETATM 3 C C2 EMO . . . H 3 130.274 46.823 -117.829 1 52.32 ? C2 EMO 303 A 1 HETATM 4 C C3 EMO . . . H 3 129.309 45.816 -117.881 1 53.97 ? C3 EMO 303 A 1 HETATM 5 O O3 EMO . . . H 3 129.377 44.885 -118.873 1 58.18 ? O3 EMO 303 A 1 HETATM 6 C C4 EMO . . . H 3 128.277 45.736 -116.946 1 51.25 ? C4 EMO 303 A 1 HETATM 7 C C5 EMO . . . H 3 128.166 46.663 -115.916 1 49.64 ? C5 EMO 303 A 1 HETATM 8 C C6 EMO . . . H 3 127.061 46.573 -114.92 1 50.05 ? C6 EMO 303 A 1 HETATM 9 O O6 EMO . . . H 3 126.216 45.655 -114.999 1 50.84 ? O6 EMO 303 A 1 HETATM 10 C C7 EMO . . . H 3 126.972 47.583 -113.828 1 48.4 ? C7 EMO 303 A 1 HETATM 11 C C8 EMO . . . H 3 125.953 47.527 -112.883 1 49.12 ? C8 EMO 303 A 1 HETATM 12 C C9 EMO . . . H 3 125.865 48.47 -111.86 1 49.71 ? C9 EMO 303 A 1 HETATM 13 C C10 EMO . . . H 3 124.742 48.363 -110.862 1 51.21 ? C10 EMO 303 A 1 HETATM 14 C C16 EMO . . . H 3 126.787 49.509 -111.734 1 49.79 ? C16 EMO 303 A 1 HETATM 15 C C17 EMO . . . H 3 127.841 49.652 -112.629 1 49.6 ? C17 EMO 303 A 1 HETATM 16 O O17 EMO . . . H 3 128.733 50.673 -112.493 1 49.6 ? O17 EMO 303 A 1 HETATM 17 C C18 EMO . . . H 3 127.977 48.672 -113.736 1 48.85 ? C18 EMO 303 A 1 HETATM 18 C C19 EMO . . . H 3 129.083 48.766 -114.73 1 49.44 ? C19 EMO 303 A 1 HETATM 19 O O19 EMO . . . H 3 129.928 49.683 -114.65 1 51.05 ? O19 EMO 303 A 1 HETATM 20 C C20 EMO . . . H 3 129.169 47.754 -115.819 1 48.85 ? C20 EMO 303 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #