data_3CSF # _model_server_result.job_id hgQaK_FKqw7mYJs6ua6R8Q _model_server_result.datetime_utc '2024-12-21 17:44:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3csf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3CSF # _exptl.entry_id 3CSF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 496.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RU-PYRIDOCARBAZOLE-2 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.26 _cell.angle_gamma 90 _cell.entry_id 3CSF _cell.length_a 143.635 _cell.length_b 68.082 _cell.length_c 106.27 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CSF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H13 N3 O4 Ru' _chem_comp.formula_weight 496.437 _chem_comp.id DW2 _chem_comp.mon_nstd_flag . _chem_comp.name RU-PYRIDOCARBAZOLE-2 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C10 DW2 trip 83 n n C10 RU18 DW2 sing 84 n n RU18 C12 DW2 sing 85 n n RU18 C13 DW2 sing 86 n n RU18 C14 DW2 sing 87 n n RU18 C16 DW2 sing 88 n n RU18 C17 DW2 sing 89 n n RU18 N21 DW2 sing 90 n n RU18 N19 DW2 sing 91 n n C12 C13 DW2 doub 92 n n C12 C17 DW2 sing 93 n n C13 C14 DW2 sing 94 n n C14 C16 DW2 doub 95 n n C16 C17 DW2 sing 96 n n N21 C6 DW2 doub 97 n n N21 C7 DW2 sing 98 n n C6 C5 DW2 sing 99 n n C6 H6 DW2 sing 100 n n C5 C4 DW2 doub 101 n n C5 H5 DW2 sing 102 n y C4 H4 DW2 sing 103 n y N19 C23 DW2 sing 104 n y N19 C22 DW2 sing 105 n n C23 C28 DW2 doub 106 n y C23 C24 DW2 sing 107 n n C28 C27 DW2 sing 108 n n C28 C29 DW2 sing 109 n y C27 C26 DW2 doub 110 n y C27 H27 DW2 sing 111 n y C26 C25 DW2 sing 112 n y C26 O15 DW2 sing 113 n y C25 C24 DW2 doub 114 n y C25 H25 DW2 sing 115 n y C24 H24 DW2 sing 116 n n O15 H15 DW2 sing 117 n y C29 C22 DW2 doub 118 n n C29 C30 DW2 sing 119 n y C22 C7 DW2 sing 120 n n C7 C3 DW2 doub 121 n n C3 C2 DW2 sing 122 n n C3 C4 DW2 sing 123 n y C30 C2 DW2 doub 124 n y C30 C31 DW2 sing 125 n y C2 C1 DW2 sing 126 n y C31 O8 DW2 doub 127 n y C31 N20 DW2 sing 128 n y N20 C1 DW2 sing 129 n y N20 H20 DW2 sing 130 n n C1 O9 DW2 doub 131 n n C13 H131 DW2 sing 132 n n C14 H141 DW2 sing 133 n n C12 H121 DW2 sing 134 n n C16 H161 DW2 sing 135 n n C17 H13 DW2 sing 136 n n # _atom_sites.entry_id 3CSF _atom_sites.fract_transf_matrix[1][1] 0.006962 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000641 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014688 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00945 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DW2 A 1 1 1 DW2 DW2 . C 3 HOH A 1 1109 1089 HOH HOH . C 3 HOH A 2 1110 1090 HOH HOH . C 3 HOH A 3 1111 1091 HOH HOH . C 3 HOH A 4 1113 1093 HOH HOH . C 3 HOH A 5 1114 1094 HOH HOH . C 3 HOH A 6 1115 1095 HOH HOH . C 3 HOH A 7 1116 1096 HOH HOH . C 3 HOH A 8 1117 1097 HOH HOH . C 3 HOH A 9 1118 1098 HOH HOH . C 3 HOH A 10 1119 1099 HOH HOH . C 3 HOH A 11 1120 1100 HOH HOH . C 3 HOH A 12 1121 1101 HOH HOH . C 3 HOH A 13 1122 1102 HOH HOH . C 3 HOH A 14 1123 1103 HOH HOH . C 3 HOH A 15 1124 1104 HOH HOH . C 3 HOH A 16 1125 1105 HOH HOH . C 3 HOH A 17 1126 1106 HOH HOH . C 3 HOH A 18 1127 1107 HOH HOH . C 3 HOH A 19 1128 1108 HOH HOH . C 3 HOH A 20 1129 1109 HOH HOH . C 3 HOH A 21 1130 1110 HOH HOH . C 3 HOH A 22 1131 1111 HOH HOH . C 3 HOH A 23 1132 1112 HOH HOH . C 3 HOH A 24 1133 1113 HOH HOH . C 3 HOH A 25 1134 1114 HOH HOH . C 3 HOH A 26 1135 1115 HOH HOH . C 3 HOH A 27 1136 1116 HOH HOH . C 3 HOH A 28 1137 1117 HOH HOH . C 3 HOH A 29 1138 1118 HOH HOH . C 3 HOH A 30 1139 1119 HOH HOH . C 3 HOH A 31 1140 1120 HOH HOH . C 3 HOH A 32 1141 1121 HOH HOH . C 3 HOH A 33 1142 1122 HOH HOH . C 3 HOH A 34 1143 1123 HOH HOH . C 3 HOH A 35 1144 1124 HOH HOH . C 3 HOH A 36 1145 1125 HOH HOH . C 3 HOH A 37 1146 1126 HOH HOH . C 3 HOH A 38 1147 1127 HOH HOH . C 3 HOH A 39 1148 1128 HOH HOH . C 3 HOH A 40 1149 1129 HOH HOH . C 3 HOH A 41 1150 1130 HOH HOH . C 3 HOH A 42 1151 1131 HOH HOH . C 3 HOH A 43 1152 1132 HOH HOH . C 3 HOH A 44 1153 1133 HOH HOH . C 3 HOH A 45 1154 1134 HOH HOH . C 3 HOH A 46 1155 1135 HOH HOH . C 3 HOH A 47 1156 1136 HOH HOH . C 3 HOH A 48 1157 1137 HOH HOH . C 3 HOH A 49 1158 1138 HOH HOH . C 3 HOH A 50 1159 1139 HOH HOH . C 3 HOH A 51 1160 1140 HOH HOH . C 3 HOH A 52 1161 1141 HOH HOH . C 3 HOH A 53 1162 1142 HOH HOH . C 3 HOH A 54 1163 1143 HOH HOH . C 3 HOH A 55 1164 1144 HOH HOH . C 3 HOH A 56 1165 1145 HOH HOH . C 3 HOH A 57 1166 1146 HOH HOH . C 3 HOH A 58 1167 1147 HOH HOH . C 3 HOH A 59 1168 1148 HOH HOH . C 3 HOH A 60 1169 1149 HOH HOH . C 3 HOH A 61 1170 1150 HOH HOH . C 3 HOH A 62 1171 1151 HOH HOH . C 3 HOH A 63 1172 1152 HOH HOH . C 3 HOH A 64 1173 1153 HOH HOH . C 3 HOH A 65 1174 1154 HOH HOH . C 3 HOH A 66 1175 1155 HOH HOH . C 3 HOH A 67 1176 1156 HOH HOH . C 3 HOH A 68 1177 1157 HOH HOH . C 3 HOH A 69 1178 1158 HOH HOH . C 3 HOH A 70 1179 1159 HOH HOH . C 3 HOH A 71 1180 1160 HOH HOH . C 3 HOH A 72 1181 1161 HOH HOH . C 3 HOH A 73 1182 1162 HOH HOH . C 3 HOH A 74 1183 1163 HOH HOH . C 3 HOH A 75 1184 1164 HOH HOH . C 3 HOH A 76 1185 1165 HOH HOH . C 3 HOH A 77 1186 1166 HOH HOH . C 3 HOH A 78 1187 1167 HOH HOH . C 3 HOH A 79 1188 1168 HOH HOH . C 3 HOH A 80 1189 1169 HOH HOH . C 3 HOH A 81 1190 1170 HOH HOH . C 3 HOH A 82 1191 1171 HOH HOH . C 3 HOH A 83 1192 1172 HOH HOH . C 3 HOH A 84 1193 1173 HOH HOH . C 3 HOH A 85 1194 1174 HOH HOH . C 3 HOH A 86 1195 1175 HOH HOH . C 3 HOH A 87 1196 1176 HOH HOH . C 3 HOH A 88 1197 1177 HOH HOH . C 3 HOH A 89 1198 1178 HOH HOH . C 3 HOH A 90 1199 1179 HOH HOH . C 3 HOH A 91 1200 1180 HOH HOH . C 3 HOH A 92 1201 1181 HOH HOH . C 3 HOH A 93 1202 1182 HOH HOH . C 3 HOH A 94 1203 1183 HOH HOH . C 3 HOH A 95 1204 1184 HOH HOH . C 3 HOH A 96 1205 1185 HOH HOH . C 3 HOH A 97 1206 1186 HOH HOH . C 3 HOH A 98 1207 1187 HOH HOH . C 3 HOH A 99 1208 1188 HOH HOH . C 3 HOH A 100 1209 1189 HOH HOH . C 3 HOH A 101 1210 1190 HOH HOH . C 3 HOH A 102 1211 1191 HOH HOH . C 3 HOH A 103 1212 1192 HOH HOH . C 3 HOH A 104 1213 1193 HOH HOH . C 3 HOH A 105 1214 1194 HOH HOH . C 3 HOH A 106 1215 1195 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 DW2 . . . B 2 48.063 21.186 30.828 0.92 162.18 ? O11 DW2 1 A 1 HETATM 2 C C10 DW2 . . . B 2 48.25 20.467 31.68 0.92 162.02 ? C10 DW2 1 A 1 HETATM 3 RU RU18 DW2 . . . B 2 48.535 19.147 33.222 0.92 161.99 ? RU18 DW2 1 A 1 HETATM 4 C C12 DW2 . . . B 2 50.365 19.996 33.866 0.92 191.12 ? C12 DW2 1 A 1 HETATM 5 C C13 DW2 . . . B 2 49.308 20.698 34.446 0.92 191.34 ? C13 DW2 1 A 1 HETATM 6 C C14 DW2 . . . B 2 48.591 19.819 35.239 0.92 191.31 ? C14 DW2 1 A 1 HETATM 7 C C16 DW2 . . . B 2 49.198 18.57 35.157 0.92 191.28 ? C16 DW2 1 A 1 HETATM 8 C C17 DW2 . . . B 2 50.293 18.675 34.311 0.92 191.09 ? C17 DW2 1 A 1 HETATM 9 N N21 DW2 . . . B 2 46.722 18.325 33.208 0.92 161.43 ? N21 DW2 1 A 1 HETATM 10 C C6 DW2 . . . B 2 45.606 18.694 33.911 0.92 160.81 ? C6 DW2 1 A 1 HETATM 11 C C5 DW2 . . . B 2 44.386 17.956 33.747 0.92 160.48 ? C5 DW2 1 A 1 HETATM 12 C C4 DW2 . . . B 2 44.33 16.839 32.843 0.92 160.77 ? C4 DW2 1 A 1 HETATM 13 N N19 DW2 . . . B 2 48.967 17.681 31.874 0.92 161.85 ? N19 DW2 1 A 1 HETATM 14 C C23 DW2 . . . B 2 49.968 17.127 31.062 0.92 161.6 ? C23 DW2 1 A 1 HETATM 15 C C28 DW2 . . . B 2 49.427 16.035 30.379 0.92 161.59 ? C28 DW2 1 A 1 HETATM 16 C C27 DW2 . . . B 2 50.258 15.288 29.494 0.92 162.26 ? C27 DW2 1 A 1 HETATM 17 C C26 DW2 . . . B 2 51.642 15.643 29.322 0.92 162.36 ? C26 DW2 1 A 1 HETATM 18 C C25 DW2 . . . B 2 52.173 16.758 30.038 0.92 161.76 ? C25 DW2 1 A 1 HETATM 19 C C24 DW2 . . . B 2 51.332 17.507 30.923 0.92 161.5 ? C24 DW2 1 A 1 HETATM 20 O O15 DW2 . . . B 2 52.397 14.896 28.471 0.92 162.9 ? O15 DW2 1 A 1 HETATM 21 C C29 DW2 . . . B 2 48.075 15.904 30.743 0.92 161.14 ? C29 DW2 1 A 1 HETATM 22 C C22 DW2 . . . B 2 47.867 16.936 31.658 0.92 161.57 ? C22 DW2 1 A 1 HETATM 23 C C7 DW2 . . . B 2 46.665 17.239 32.325 0.92 161.31 ? C7 DW2 1 A 1 HETATM 24 C C3 DW2 . . . B 2 45.495 16.435 32.095 0.92 160.77 ? C3 DW2 1 A 1 HETATM 25 C C30 DW2 . . . B 2 46.93 15.097 30.464 0.92 160.16 ? C30 DW2 1 A 1 HETATM 26 C C2 DW2 . . . B 2 45.664 15.339 31.134 0.92 160.21 ? C2 DW2 1 A 1 HETATM 27 C C31 DW2 . . . B 2 46.724 13.987 29.643 0.92 159.38 ? C31 DW2 1 A 1 HETATM 28 O O8 DW2 . . . B 2 47.519 13.452 28.913 0.92 158.24 ? O8 DW2 1 A 1 HETATM 29 N N20 DW2 . . . B 2 45.435 13.568 29.753 0.92 159.21 ? N20 DW2 1 A 1 HETATM 30 C C1 DW2 . . . B 2 44.784 14.37 30.645 0.92 159.54 ? C1 DW2 1 A 1 HETATM 31 O O9 DW2 . . . B 2 43.617 14.182 30.917 0.92 159.16 ? O9 DW2 1 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #