data_3CSL # _model_server_result.job_id XsrTuGEaWvAGAWSaf_MHRQ _model_server_result.datetime_utc '2024-11-21 13:37:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3csl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":866}' # _entry.id 3CSL # _exptl.entry_id 3CSL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CSL _cell.length_a 157.02 _cell.length_b 163.4 _cell.length_c 595.53 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CSL _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,J,N 1 1 B,D,K,L,M,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 538 A CYS 538 1_555 A SG CYS 546 A CYS 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 715 A CYS 715 1_555 A SG CYS 750 A CYS 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 538 B CYS 538 1_555 B SG CYS 546 B CYS 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 715 B CYS 715 1_555 B SG CYS 750 B CYS 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A NE2 HIS 189 A HIS 189 1_555 E FE HEM . A HEM 866 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc2 A NE2 HIS 603 A HIS 603 1_555 E FE HEM . A HEM 866 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc3 B NE2 HIS 189 B HIS 189 1_555 K FE HEM . B HEM 866 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc4 B NE2 HIS 603 B HIS 603 1_555 K FE HEM . B HEM 866 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 142 n n CHA C4D HEM doub 143 n n CHA HHA HEM sing 144 n n CHB C4A HEM sing 145 n n CHB C1B HEM doub 146 n n CHB HHB HEM sing 147 n n CHC C4B HEM sing 148 n n CHC C1C HEM doub 149 n n CHC HHC HEM sing 150 n n CHD C4C HEM doub 151 n n CHD C1D HEM sing 152 n n CHD HHD HEM sing 153 n n C1A C2A HEM doub 154 n y C1A NA HEM sing 155 n y C2A C3A HEM sing 156 n y C2A CAA HEM sing 157 n n C3A C4A HEM doub 158 n y C3A CMA HEM sing 159 n n C4A NA HEM sing 160 n y CMA HMA HEM sing 161 n n CMA HMAA HEM sing 162 n n CMA HMAB HEM sing 163 n n CAA CBA HEM sing 164 n n CAA HAA HEM sing 165 n n CAA HAAA HEM sing 166 n n CBA CGA HEM sing 167 n n CBA HBA HEM sing 168 n n CBA HBAA HEM sing 169 n n CGA O1A HEM doub 170 n n CGA O2A HEM sing 171 n n C1B C2B HEM sing 172 n n C1B NB HEM sing 173 n n C2B C3B HEM doub 174 n n C2B CMB HEM sing 175 n n C3B C4B HEM sing 176 n n C3B CAB HEM sing 177 n n C4B NB HEM doub 178 n n CMB HMB HEM sing 179 n n CMB HMBA HEM sing 180 n n CMB HMBB HEM sing 181 n n CAB CBB HEM doub 182 n n CAB HAB HEM sing 183 n n CBB HBB HEM sing 184 n n CBB HBBA HEM sing 185 n n C1C C2C HEM sing 186 n y C1C NC HEM sing 187 n y C2C C3C HEM doub 188 n y C2C CMC HEM sing 189 n n C3C C4C HEM sing 190 n y C3C CAC HEM sing 191 n n C4C NC HEM sing 192 n y CMC HMC HEM sing 193 n n CMC HMCA HEM sing 194 n n CMC HMCB HEM sing 195 n n CAC CBC HEM doub 196 n n CAC HAC HEM sing 197 n n CBC HBC HEM sing 198 n n CBC HBCA HEM sing 199 n n C1D C2D HEM sing 200 n n C1D ND HEM doub 201 n n C2D C3D HEM doub 202 n n C2D CMD HEM sing 203 n n C3D C4D HEM sing 204 n n C3D CAD HEM sing 205 n n C4D ND HEM sing 206 n n CMD HMD HEM sing 207 n n CMD HMDA HEM sing 208 n n CMD HMDB HEM sing 209 n n CAD CBD HEM sing 210 n n CAD HAD HEM sing 211 n n CAD HADA HEM sing 212 n n CBD CGD HEM sing 213 n n CBD HBD HEM sing 214 n n CBD HBDA HEM sing 215 n n CGD O1D HEM doub 216 n n CGD O2D HEM sing 217 n n O2A H2A HEM sing 218 n n O2D H2D HEM sing 219 n n FE NA HEM sing 220 n n FE NB HEM sing 221 n n FE NC HEM sing 222 n n FE ND HEM sing 223 n n # _atom_sites.entry_id 3CSL _atom_sites.fract_transf_matrix[1][1] 0.006369 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HEM A 1 866 1 HEM HEM . F 4 GOL A 1 867 1 GOL GOL . G 4 GOL A 1 868 3 GOL GOL . H 4 GOL A 1 869 5 GOL GOL . I 4 GOL A 1 870 6 GOL GOL . J 4 GOL A 1 871 7 GOL GOL . K 3 HEM B 1 866 2 HEM HEM . L 4 GOL B 1 867 2 GOL GOL . M 4 GOL B 1 868 4 GOL GOL . N 5 HOH A 1 872 1 HOH HOH . N 5 HOH A 2 873 2 HOH HOH . N 5 HOH A 3 874 3 HOH HOH . N 5 HOH A 4 875 4 HOH HOH . N 5 HOH A 5 876 7 HOH HOH . N 5 HOH A 6 877 8 HOH HOH . N 5 HOH A 7 878 10 HOH HOH . N 5 HOH A 8 879 13 HOH HOH . N 5 HOH A 9 880 16 HOH HOH . N 5 HOH A 10 881 18 HOH HOH . N 5 HOH A 11 882 19 HOH HOH . N 5 HOH A 12 883 20 HOH HOH . N 5 HOH A 13 884 22 HOH HOH . N 5 HOH A 14 885 23 HOH HOH . N 5 HOH A 15 886 27 HOH HOH . N 5 HOH A 16 887 29 HOH HOH . N 5 HOH A 17 888 30 HOH HOH . N 5 HOH A 18 889 32 HOH HOH . N 5 HOH A 19 890 33 HOH HOH . N 5 HOH A 20 891 34 HOH HOH . N 5 HOH A 21 892 35 HOH HOH . N 5 HOH A 22 893 37 HOH HOH . N 5 HOH A 23 894 38 HOH HOH . N 5 HOH A 24 895 39 HOH HOH . N 5 HOH A 25 896 41 HOH HOH . N 5 HOH A 26 897 43 HOH HOH . O 5 HOH B 1 869 6 HOH HOH . O 5 HOH B 2 870 9 HOH HOH . O 5 HOH B 3 871 11 HOH HOH . O 5 HOH B 4 872 12 HOH HOH . O 5 HOH B 5 873 14 HOH HOH . O 5 HOH B 6 874 15 HOH HOH . O 5 HOH B 7 875 17 HOH HOH . O 5 HOH B 8 876 21 HOH HOH . O 5 HOH B 9 877 24 HOH HOH . O 5 HOH B 10 878 25 HOH HOH . O 5 HOH B 11 879 26 HOH HOH . O 5 HOH B 12 880 28 HOH HOH . O 5 HOH B 13 881 31 HOH HOH . O 5 HOH B 14 882 36 HOH HOH . O 5 HOH B 15 883 40 HOH HOH . O 5 HOH B 16 884 42 HOH HOH . P 5 HOH D 1 189 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 3 48.071 54.653 262.928 1 82.44 ? CHA HEM 866 A 1 HETATM 2 C CHB HEM . . . E 3 45.226 57.169 259.912 1 91.16 ? CHB HEM 866 A 1 HETATM 3 C CHC HEM . . . E 3 47.746 61.192 260.955 1 61.52 ? CHC HEM 866 A 1 HETATM 4 C CHD HEM . . . E 3 50.61 58.695 263.973 1 79.79 ? CHD HEM 866 A 1 HETATM 5 C C1A HEM . . . E 3 47.087 54.993 262.031 1 76.64 ? C1A HEM 866 A 1 HETATM 6 C C2A HEM . . . E 3 46.111 54.077 261.489 1 95.17 ? C2A HEM 866 A 1 HETATM 7 C C3A HEM . . . E 3 45.321 54.759 260.654 1 89.22 ? C3A HEM 866 A 1 HETATM 8 C C4A HEM . . . E 3 45.771 56.137 260.645 1 72.4 ? C4A HEM 866 A 1 HETATM 9 C CMA HEM . . . E 3 44.134 54.191 259.845 1 72.66 ? CMA HEM 866 A 1 HETATM 10 C CAA HEM . . . E 3 46.034 52.577 261.845 1 116.86 ? CAA HEM 866 A 1 HETATM 11 C CBA HEM . . . E 3 44.777 52.327 262.673 1 141.74 ? CBA HEM 866 A 1 HETATM 12 C CGA HEM . . . E 3 45.071 51.306 263.741 1 148.11 ? CGA HEM 866 A 1 HETATM 13 O O1A HEM . . . E 3 44.189 51.075 264.608 1 131.43 ? O1A HEM 866 A 1 HETATM 14 O O2A HEM . . . E 3 46.189 50.729 263.731 1 164.31 ? O2A HEM 866 A 1 HETATM 15 C C1B HEM . . . E 3 45.66 58.477 259.921 1 61.33 ? C1B HEM 866 A 1 HETATM 16 C C2B HEM . . . E 3 45.097 59.571 259.155 1 67.05 ? C2B HEM 866 A 1 HETATM 17 C C3B HEM . . . E 3 45.787 60.676 259.441 1 85.84 ? C3B HEM 866 A 1 HETATM 18 C C4B HEM . . . E 3 46.821 60.331 260.401 1 74.97 ? C4B HEM 866 A 1 HETATM 19 C CMB HEM . . . E 3 43.909 59.485 258.171 1 55.32 ? CMB HEM 866 A 1 HETATM 20 C CAB HEM . . . E 3 45.513 62.07 258.833 1 79.87 ? CAB HEM 866 A 1 HETATM 21 C CBB HEM . . . E 3 46.232 63.135 259.202 1 126.99 ? CBB HEM 866 A 1 HETATM 22 C C1C HEM . . . E 3 48.73 60.871 261.863 1 76.84 ? C1C HEM 866 A 1 HETATM 23 C C2C HEM . . . E 3 49.694 61.792 262.435 1 76.32 ? C2C HEM 866 A 1 HETATM 24 C C3C HEM . . . E 3 50.483 61.1 263.269 1 74.76 ? C3C HEM 866 A 1 HETATM 25 C C4C HEM . . . E 3 50.045 59.72 263.249 1 72.27 ? C4C HEM 866 A 1 HETATM 26 C CMC HEM . . . E 3 49.763 63.303 262.119 1 64.67 ? CMC HEM 866 A 1 HETATM 27 C CAC HEM . . . E 3 51.661 61.619 264.127 1 70.61 ? CAC HEM 866 A 1 HETATM 28 C CBC HEM . . . E 3 51.976 62.916 264.19 1 102 ? CBC HEM 866 A 1 HETATM 29 C C1D HEM . . . E 3 50.214 57.377 263.977 1 76.39 ? C1D HEM 866 A 1 HETATM 30 C C2D HEM . . . E 3 50.84 56.324 264.747 1 80.13 ? C2D HEM 866 A 1 HETATM 31 C C3D HEM . . . E 3 50.05 55.051 264.424 1 82.62 ? C3D HEM 866 A 1 HETATM 32 C C4D HEM . . . E 3 49.025 55.472 263.487 1 81.62 ? C4D HEM 866 A 1 HETATM 33 C CMD HEM . . . E 3 52.057 56.453 265.689 1 87.19 ? CMD HEM 866 A 1 HETATM 34 C CAD HEM . . . E 3 50.323 53.634 264.984 1 90.26 ? CAD HEM 866 A 1 HETATM 35 C CBD HEM . . . E 3 49.781 52.566 264.036 1 115.98 ? CBD HEM 866 A 1 HETATM 36 C CGD HEM . . . E 3 50.603 51.309 264.118 1 146.79 ? CGD HEM 866 A 1 HETATM 37 O O1D HEM . . . E 3 50.147 50.265 263.586 1 171.42 ? O1D HEM 866 A 1 HETATM 38 O O2D HEM . . . E 3 51.71 51.352 264.713 1 151.38 ? O2D HEM 866 A 1 HETATM 39 N NA HEM . . . E 3 46.855 56.241 261.497 1 50.89 ? NA HEM 866 A 1 HETATM 40 N NB HEM . . . E 3 46.709 58.979 260.671 1 63.79 ? NB HEM 866 A 1 HETATM 41 N NC HEM . . . E 3 48.977 59.616 262.381 1 42.18 ? NC HEM 866 A 1 HETATM 42 N ND HEM . . . E 3 49.153 56.838 263.256 1 60.98 ? ND HEM 866 A 1 HETATM 43 FE FE HEM . . . E 3 47.913 57.914 261.986 1 73.59 ? FE HEM 866 A 1 # _model_server_stats.io_time_ms 134 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #