data_3CSV # _model_server_result.job_id zmQQqyE0FqWWG-3ypaN5dA _model_server_result.datetime_utc '2024-11-13 13:54:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3csv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":341}' # _entry.id 3CSV # _exptl.entry_id 3CSV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.9 _cell.angle_gamma 90 _cell.entry_id 3CSV _cell.length_a 113.68 _cell.length_b 55.94 _cell.length_c 61.22 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CSV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -13.667372 0 59.67488 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 48 A LEU 47 1_555 A N MSE 49 A MSE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C MSE 49 A MSE 48 1_555 A N ASP 50 A ASP 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C GLU 110 A GLU 109 1_555 A N MSE 111 A MSE 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 111 A MSE 110 1_555 A N PRO 112 A PRO 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale5 A C GLU 142 A GLU 141 1_555 A N MSE 143 A MSE 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C MSE 143 A MSE 142 1_555 A N THR 144 A THR 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale7 A C ASP 182 A ASP 181 1_555 A N MSE 183 A MSE 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 A C MSE 183 A MSE 182 1_555 A N VAL 184 A VAL 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale9 A C GLN 242 A GLN 241 1_555 A N MSE 243 A MSE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 A C MSE 243 A MSE 242 1_555 A N ILE 244 A ILE 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale11 A C ASN 270 A ASN 269 1_555 A N MSE 271 A MSE 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 A C MSE 271 A MSE 270 1_555 A N ARG 272 A ARG 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OG SER 40 A SER 39 1_555 C NA NA . A NA 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.954 ? metalc ? metalc2 A OE2 GLU 82 A GLU 81 1_555 B ZN ZN . A ZN 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc3 A NE2 HIS 84 A HIS 83 1_555 B ZN ZN . A ZN 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 3CSV _atom_sites.fract_transf_matrix[1][1] 0.008797 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002014 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017876 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 333 1 ZN ZN . C 3 NA A 1 334 2 NA NA . D 4 CL A 1 335 3 CL CL . E 5 SO4 A 1 336 4 SO4 SO4 . F 6 EDO A 1 337 5 EDO EDO . G 6 EDO A 1 338 6 EDO EDO . H 6 EDO A 1 339 7 EDO EDO . I 6 EDO A 1 340 8 EDO EDO . J 6 EDO A 1 341 9 EDO EDO . K 6 EDO A 1 342 10 EDO EDO . L 6 EDO A 1 343 11 EDO EDO . M 6 EDO A 1 344 12 EDO EDO . N 6 EDO A 1 345 13 EDO EDO . O 6 EDO A 1 346 14 EDO EDO . P 6 EDO A 1 347 15 EDO EDO . Q 7 HOH A 1 348 16 HOH HOH . Q 7 HOH A 2 349 17 HOH HOH . Q 7 HOH A 3 350 18 HOH HOH . Q 7 HOH A 4 351 19 HOH HOH . Q 7 HOH A 5 352 20 HOH HOH . Q 7 HOH A 6 353 21 HOH HOH . Q 7 HOH A 7 354 22 HOH HOH . Q 7 HOH A 8 355 23 HOH HOH . Q 7 HOH A 9 356 24 HOH HOH . Q 7 HOH A 10 357 25 HOH HOH . Q 7 HOH A 11 358 26 HOH HOH . Q 7 HOH A 12 359 27 HOH HOH . Q 7 HOH A 13 360 28 HOH HOH . Q 7 HOH A 14 361 29 HOH HOH . Q 7 HOH A 15 362 30 HOH HOH . Q 7 HOH A 16 363 31 HOH HOH . Q 7 HOH A 17 364 32 HOH HOH . Q 7 HOH A 18 365 33 HOH HOH . Q 7 HOH A 19 366 34 HOH HOH . Q 7 HOH A 20 367 35 HOH HOH . Q 7 HOH A 21 368 36 HOH HOH . Q 7 HOH A 22 369 37 HOH HOH . Q 7 HOH A 23 370 38 HOH HOH . Q 7 HOH A 24 371 39 HOH HOH . Q 7 HOH A 25 372 40 HOH HOH . Q 7 HOH A 26 373 41 HOH HOH . Q 7 HOH A 27 374 42 HOH HOH . Q 7 HOH A 28 375 43 HOH HOH . Q 7 HOH A 29 376 44 HOH HOH . Q 7 HOH A 30 377 45 HOH HOH . Q 7 HOH A 31 378 46 HOH HOH . Q 7 HOH A 32 379 47 HOH HOH . Q 7 HOH A 33 380 48 HOH HOH . Q 7 HOH A 34 381 49 HOH HOH . Q 7 HOH A 35 382 50 HOH HOH . Q 7 HOH A 36 383 51 HOH HOH . Q 7 HOH A 37 384 52 HOH HOH . Q 7 HOH A 38 385 53 HOH HOH . Q 7 HOH A 39 386 54 HOH HOH . Q 7 HOH A 40 387 55 HOH HOH . Q 7 HOH A 41 388 56 HOH HOH . Q 7 HOH A 42 389 57 HOH HOH . Q 7 HOH A 43 390 58 HOH HOH . Q 7 HOH A 44 391 59 HOH HOH . Q 7 HOH A 45 392 60 HOH HOH . Q 7 HOH A 46 393 61 HOH HOH . Q 7 HOH A 47 394 62 HOH HOH . Q 7 HOH A 48 395 63 HOH HOH . Q 7 HOH A 49 396 64 HOH HOH . Q 7 HOH A 50 397 65 HOH HOH . Q 7 HOH A 51 398 66 HOH HOH . Q 7 HOH A 52 399 67 HOH HOH . Q 7 HOH A 53 400 68 HOH HOH . Q 7 HOH A 54 401 69 HOH HOH . Q 7 HOH A 55 402 70 HOH HOH . Q 7 HOH A 56 403 71 HOH HOH . Q 7 HOH A 57 404 72 HOH HOH . Q 7 HOH A 58 405 73 HOH HOH . Q 7 HOH A 59 406 74 HOH HOH . Q 7 HOH A 60 407 75 HOH HOH . Q 7 HOH A 61 408 76 HOH HOH . Q 7 HOH A 62 409 77 HOH HOH . Q 7 HOH A 63 410 78 HOH HOH . Q 7 HOH A 64 411 79 HOH HOH . Q 7 HOH A 65 412 80 HOH HOH . Q 7 HOH A 66 413 81 HOH HOH . Q 7 HOH A 67 414 82 HOH HOH . Q 7 HOH A 68 415 83 HOH HOH . Q 7 HOH A 69 416 84 HOH HOH . Q 7 HOH A 70 417 85 HOH HOH . Q 7 HOH A 71 418 86 HOH HOH . Q 7 HOH A 72 419 87 HOH HOH . Q 7 HOH A 73 420 88 HOH HOH . Q 7 HOH A 74 421 89 HOH HOH . Q 7 HOH A 75 422 90 HOH HOH . Q 7 HOH A 76 423 91 HOH HOH . Q 7 HOH A 77 424 92 HOH HOH . Q 7 HOH A 78 425 93 HOH HOH . Q 7 HOH A 79 426 94 HOH HOH . Q 7 HOH A 80 427 95 HOH HOH . Q 7 HOH A 81 428 96 HOH HOH . Q 7 HOH A 82 429 97 HOH HOH . Q 7 HOH A 83 430 98 HOH HOH . Q 7 HOH A 84 431 99 HOH HOH . Q 7 HOH A 85 432 100 HOH HOH . Q 7 HOH A 86 433 101 HOH HOH . Q 7 HOH A 87 434 102 HOH HOH . Q 7 HOH A 88 435 103 HOH HOH . Q 7 HOH A 89 436 104 HOH HOH . Q 7 HOH A 90 437 105 HOH HOH . Q 7 HOH A 91 438 106 HOH HOH . Q 7 HOH A 92 439 107 HOH HOH . Q 7 HOH A 93 440 108 HOH HOH . Q 7 HOH A 94 441 109 HOH HOH . Q 7 HOH A 95 442 110 HOH HOH . Q 7 HOH A 96 443 111 HOH HOH . Q 7 HOH A 97 444 112 HOH HOH . Q 7 HOH A 98 445 113 HOH HOH . Q 7 HOH A 99 446 114 HOH HOH . Q 7 HOH A 100 447 115 HOH HOH . Q 7 HOH A 101 448 116 HOH HOH . Q 7 HOH A 102 449 117 HOH HOH . Q 7 HOH A 103 450 118 HOH HOH . Q 7 HOH A 104 451 119 HOH HOH . Q 7 HOH A 105 452 120 HOH HOH . Q 7 HOH A 106 453 121 HOH HOH . Q 7 HOH A 107 454 122 HOH HOH . Q 7 HOH A 108 455 123 HOH HOH . Q 7 HOH A 109 456 124 HOH HOH . Q 7 HOH A 110 457 125 HOH HOH . Q 7 HOH A 111 458 126 HOH HOH . Q 7 HOH A 112 459 127 HOH HOH . Q 7 HOH A 113 460 128 HOH HOH . Q 7 HOH A 114 461 129 HOH HOH . Q 7 HOH A 115 462 130 HOH HOH . Q 7 HOH A 116 463 131 HOH HOH . Q 7 HOH A 117 464 132 HOH HOH . Q 7 HOH A 118 465 133 HOH HOH . Q 7 HOH A 119 466 134 HOH HOH . Q 7 HOH A 120 467 135 HOH HOH . Q 7 HOH A 121 468 136 HOH HOH . Q 7 HOH A 122 469 137 HOH HOH . Q 7 HOH A 123 470 138 HOH HOH . Q 7 HOH A 124 471 139 HOH HOH . Q 7 HOH A 125 472 140 HOH HOH . Q 7 HOH A 126 473 141 HOH HOH . Q 7 HOH A 127 474 142 HOH HOH . Q 7 HOH A 128 475 143 HOH HOH . Q 7 HOH A 129 476 144 HOH HOH . Q 7 HOH A 130 477 145 HOH HOH . Q 7 HOH A 131 478 146 HOH HOH . Q 7 HOH A 132 479 147 HOH HOH . Q 7 HOH A 133 480 148 HOH HOH . Q 7 HOH A 134 481 149 HOH HOH . Q 7 HOH A 135 482 150 HOH HOH . Q 7 HOH A 136 483 151 HOH HOH . Q 7 HOH A 137 484 152 HOH HOH . Q 7 HOH A 138 485 153 HOH HOH . Q 7 HOH A 139 486 154 HOH HOH . Q 7 HOH A 140 487 155 HOH HOH . Q 7 HOH A 141 488 156 HOH HOH . Q 7 HOH A 142 489 157 HOH HOH . Q 7 HOH A 143 490 158 HOH HOH . Q 7 HOH A 144 491 159 HOH HOH . Q 7 HOH A 145 492 160 HOH HOH . Q 7 HOH A 146 493 161 HOH HOH . Q 7 HOH A 147 494 162 HOH HOH . Q 7 HOH A 148 495 163 HOH HOH . Q 7 HOH A 149 496 164 HOH HOH . Q 7 HOH A 150 497 165 HOH HOH . Q 7 HOH A 151 498 166 HOH HOH . Q 7 HOH A 152 499 167 HOH HOH . Q 7 HOH A 153 500 168 HOH HOH . Q 7 HOH A 154 501 169 HOH HOH . Q 7 HOH A 155 502 170 HOH HOH . Q 7 HOH A 156 503 171 HOH HOH . Q 7 HOH A 157 504 172 HOH HOH . Q 7 HOH A 158 505 173 HOH HOH . Q 7 HOH A 159 506 174 HOH HOH . Q 7 HOH A 160 507 175 HOH HOH . Q 7 HOH A 161 508 176 HOH HOH . Q 7 HOH A 162 509 177 HOH HOH . Q 7 HOH A 163 510 178 HOH HOH . Q 7 HOH A 164 511 179 HOH HOH . Q 7 HOH A 165 512 180 HOH HOH . Q 7 HOH A 166 513 181 HOH HOH . Q 7 HOH A 167 514 182 HOH HOH . Q 7 HOH A 168 515 183 HOH HOH . Q 7 HOH A 169 516 184 HOH HOH . Q 7 HOH A 170 517 185 HOH HOH . Q 7 HOH A 171 518 186 HOH HOH . Q 7 HOH A 172 519 187 HOH HOH . Q 7 HOH A 173 520 188 HOH HOH . Q 7 HOH A 174 521 189 HOH HOH . Q 7 HOH A 175 522 190 HOH HOH . Q 7 HOH A 176 523 191 HOH HOH . Q 7 HOH A 177 524 192 HOH HOH . Q 7 HOH A 178 525 193 HOH HOH . Q 7 HOH A 179 526 194 HOH HOH . Q 7 HOH A 180 527 195 HOH HOH . Q 7 HOH A 181 528 196 HOH HOH . Q 7 HOH A 182 529 197 HOH HOH . Q 7 HOH A 183 530 198 HOH HOH . Q 7 HOH A 184 531 199 HOH HOH . Q 7 HOH A 185 532 200 HOH HOH . Q 7 HOH A 186 533 201 HOH HOH . Q 7 HOH A 187 534 202 HOH HOH . Q 7 HOH A 188 535 203 HOH HOH . Q 7 HOH A 189 536 204 HOH HOH . Q 7 HOH A 190 537 205 HOH HOH . Q 7 HOH A 191 538 206 HOH HOH . Q 7 HOH A 192 539 207 HOH HOH . Q 7 HOH A 193 540 208 HOH HOH . Q 7 HOH A 194 541 209 HOH HOH . Q 7 HOH A 195 542 210 HOH HOH . Q 7 HOH A 196 543 211 HOH HOH . Q 7 HOH A 197 544 212 HOH HOH . Q 7 HOH A 198 545 213 HOH HOH . Q 7 HOH A 199 546 214 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 6 22.789 24.376 3.768 1 48.32 ? C1 EDO 341 A 1 HETATM 2 O O1 EDO . . . J 6 21.77 23.366 3.82 1 51.04 ? O1 EDO 341 A 1 HETATM 3 C C2 EDO . . . J 6 22.736 25.242 5.028 1 51.14 ? C2 EDO 341 A 1 HETATM 4 O O2 EDO . . . J 6 23.889 25.079 5.875 1 38.25 ? O2 EDO 341 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 89 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 4 #