data_3CTR # _model_server_result.job_id Cc3HKUR335r0yZfT2akAow _model_server_result.datetime_utc '2025-03-09 04:33:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ctr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3CTR # _exptl.entry_id 3CTR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 538.215 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CTR _cell.length_a 81.107 _cell.length_b 81.107 _cell.length_c 78.058 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CTR _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_545 y+1/2,x-1/2,-z+1/2 0 1 0 1 0 0 0 0 -1 40.5535 -40.5535 39.029 3 'crystal symmetry operation' 10_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 81.107 0 0 4 'crystal symmetry operation' 16_555 -y+1/2,-x+1/2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 40.5535 40.5535 39.029 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H19 N5 O14 P3 1' _chem_comp.formula_weight 538.215 _chem_comp.id MGP _chem_comp.mon_nstd_flag . _chem_comp.name "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A MGP sing 224 n n PA O2A MGP doub 225 n n PA O3A MGP sing 226 n n PA O5' MGP sing 227 n n O3A PB MGP sing 228 n n O5' C5' MGP sing 229 n n PB O1B MGP sing 230 n n PB O2B MGP doub 231 n n PB O3B MGP sing 232 n n O3B PC MGP sing 233 n n PC O1C MGP sing 234 n n PC O2C MGP doub 235 n n PC O3C MGP sing 236 n n C5' C4' MGP sing 237 n n C5' H5' MGP sing 238 n n C5' "H5'A" MGP sing 239 n n C4' O4' MGP sing 240 n n C4' C3' MGP sing 241 n n C4' H4' MGP sing 242 n n O4' C1' MGP sing 243 n n C3' O3' MGP sing 244 n n C3' C2' MGP sing 245 n n C3' H3' MGP sing 246 n n O3' HO3' MGP sing 247 n n C2' O2' MGP sing 248 n n C2' C1' MGP sing 249 n n C2' H2' MGP sing 250 n n O2' HO2' MGP sing 251 n n C1' N9 MGP sing 252 n n C1' H1' MGP sing 253 n n N9 C8 MGP sing 254 n y N9 C4 MGP sing 255 n y C8 N7 MGP doub 256 n y C8 H8 MGP sing 257 n n N7 CM7 MGP sing 258 n n N7 C5 MGP sing 259 n y CM7 HM7 MGP sing 260 n n CM7 HM7A MGP sing 261 n n CM7 HM7B MGP sing 262 n n C5 C6 MGP sing 263 n n C5 C4 MGP doub 264 n y C6 O6 MGP doub 265 n n C6 N1 MGP sing 266 n n N1 C2 MGP sing 267 n n N1 HN1 MGP sing 268 n n C2 N2 MGP sing 269 n n C2 N3 MGP doub 270 n n N2 HN2 MGP sing 271 n n N2 HN2A MGP sing 272 n n N3 C4 MGP sing 273 n n O1A H16 MGP sing 274 n n O1B H17 MGP sing 275 n n O1C H18 MGP sing 276 n n O3C H19 MGP sing 277 n n # _atom_sites.entry_id 3CTR _atom_sites.fract_transf_matrix[1][1] 0.012329 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012329 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MGP A 1 1 1 MGP MGP . C 3 HOH A 1 541 1 HOH HOH . C 3 HOH A 2 542 2 HOH HOH . C 3 HOH A 3 543 3 HOH HOH . C 3 HOH A 4 544 4 HOH HOH . C 3 HOH A 5 545 5 HOH HOH . C 3 HOH A 6 546 6 HOH HOH . C 3 HOH A 7 547 7 HOH HOH . C 3 HOH A 8 548 8 HOH HOH . C 3 HOH A 9 549 9 HOH HOH . C 3 HOH A 10 550 10 HOH HOH . C 3 HOH A 11 551 11 HOH HOH . C 3 HOH A 12 552 12 HOH HOH . C 3 HOH A 13 553 13 HOH HOH . C 3 HOH A 14 554 14 HOH HOH . C 3 HOH A 15 555 15 HOH HOH . C 3 HOH A 16 556 16 HOH HOH . C 3 HOH A 17 557 17 HOH HOH . C 3 HOH A 18 558 18 HOH HOH . C 3 HOH A 19 559 19 HOH HOH . C 3 HOH A 20 560 20 HOH HOH . C 3 HOH A 21 561 21 HOH HOH . C 3 HOH A 22 562 22 HOH HOH . C 3 HOH A 23 563 23 HOH HOH . C 3 HOH A 24 564 24 HOH HOH . C 3 HOH A 25 565 25 HOH HOH . C 3 HOH A 26 566 26 HOH HOH . C 3 HOH A 27 567 27 HOH HOH . C 3 HOH A 28 568 28 HOH HOH . C 3 HOH A 29 569 29 HOH HOH . C 3 HOH A 30 570 30 HOH HOH . C 3 HOH A 31 571 31 HOH HOH . C 3 HOH A 32 572 32 HOH HOH . C 3 HOH A 33 573 33 HOH HOH . C 3 HOH A 34 574 34 HOH HOH . C 3 HOH A 35 575 35 HOH HOH . C 3 HOH A 36 576 36 HOH HOH . C 3 HOH A 37 577 37 HOH HOH . C 3 HOH A 38 578 38 HOH HOH . C 3 HOH A 39 579 39 HOH HOH . C 3 HOH A 40 580 40 HOH HOH . C 3 HOH A 41 581 41 HOH HOH . C 3 HOH A 42 582 42 HOH HOH . C 3 HOH A 43 583 43 HOH HOH . C 3 HOH A 44 584 44 HOH HOH . C 3 HOH A 45 585 45 HOH HOH . C 3 HOH A 46 586 46 HOH HOH . C 3 HOH A 47 587 47 HOH HOH . C 3 HOH A 48 588 48 HOH HOH . C 3 HOH A 49 589 49 HOH HOH . C 3 HOH A 50 590 50 HOH HOH . C 3 HOH A 51 591 51 HOH HOH . C 3 HOH A 52 592 52 HOH HOH . C 3 HOH A 53 593 53 HOH HOH . C 3 HOH A 54 594 54 HOH HOH . C 3 HOH A 55 595 55 HOH HOH . C 3 HOH A 56 596 56 HOH HOH . C 3 HOH A 57 597 57 HOH HOH . C 3 HOH A 58 598 58 HOH HOH . C 3 HOH A 59 599 59 HOH HOH . C 3 HOH A 60 600 60 HOH HOH . C 3 HOH A 61 601 61 HOH HOH . C 3 HOH A 62 602 62 HOH HOH . C 3 HOH A 63 603 63 HOH HOH . C 3 HOH A 64 604 64 HOH HOH . C 3 HOH A 65 605 65 HOH HOH . C 3 HOH A 66 606 66 HOH HOH . C 3 HOH A 67 607 67 HOH HOH . C 3 HOH A 68 608 68 HOH HOH . C 3 HOH A 69 609 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA MGP . . . B 2 26.43 21.075 0.589 1 74.64 ? PA MGP 1 A 1 HETATM 2 O O1A MGP . . . B 2 25.622 19.989 -0.029 1 74.73 ? O1A MGP 1 A 1 HETATM 3 O O2A MGP . . . B 2 26.095 22.5 0.292 1 74.29 ? O2A MGP 1 A 1 HETATM 4 O O3A MGP . . . B 2 26.429 20.832 2.18 1 73.85 ? O3A MGP 1 A 1 HETATM 5 O O5' MGP . . . B 2 27.996 20.8 0.244 1 70.57 ? O5' MGP 1 A 1 HETATM 6 P PB MGP . . . B 2 27.443 21.627 3.144 0.3 74.33 ? PB MGP 1 A 1 HETATM 7 O O1B MGP . . . B 2 27.308 23.079 2.882 0.3 74.26 ? O1B MGP 1 A 1 HETATM 8 O O2B MGP . . . B 2 28.776 20.992 3.068 0.3 74.09 ? O2B MGP 1 A 1 HETATM 9 O O3B MGP . . . B 2 26.793 21.312 4.578 0.3 73.82 ? O3B MGP 1 A 1 HETATM 10 P PC MGP . . . B 2 26.761 19.82 5.197 0.3 73.72 ? PC MGP 1 A 1 HETATM 11 O O1C MGP . . . B 2 28.099 19.217 5.433 0.3 73.76 ? O1C MGP 1 A 1 HETATM 12 O O2C MGP . . . B 2 25.834 18.894 4.247 0.3 73.03 ? O2C MGP 1 A 1 HETATM 13 O O3C MGP . . . B 2 25.929 19.996 6.579 0.3 73.4 ? O3C MGP 1 A 1 HETATM 14 C C5' MGP . . . B 2 28.745 21.618 -0.664 1 65.78 ? C5' MGP 1 A 1 HETATM 15 C C4' MGP . . . B 2 29.581 20.788 -1.65 1 62.36 ? C4' MGP 1 A 1 HETATM 16 O O4' MGP . . . B 2 30.173 19.607 -1.019 1 60.05 ? O4' MGP 1 A 1 HETATM 17 C C3' MGP . . . B 2 28.694 20.253 -2.778 1 61.39 ? C3' MGP 1 A 1 HETATM 18 O O3' MGP . . . B 2 28.624 21.239 -3.826 1 63.57 ? O3' MGP 1 A 1 HETATM 19 C C2' MGP . . . B 2 29.478 19.024 -3.245 1 58.89 ? C2' MGP 1 A 1 HETATM 20 O O2' MGP . . . B 2 30.54 19.418 -4.124 1 57.59 ? O2' MGP 1 A 1 HETATM 21 C C1' MGP . . . B 2 30.08 18.485 -1.932 1 55.01 ? C1' MGP 1 A 1 HETATM 22 N N9 MGP . . . B 2 29.176 17.475 -1.325 1 53.47 ? N9 MGP 1 A 1 HETATM 23 C C8 MGP . . . B 2 28.265 17.691 -0.373 1 52.88 ? C8 MGP 1 A 1 HETATM 24 N N7 MGP . . . B 2 27.653 16.541 -0.113 1 52.97 ? N7 MGP 1 A 1 HETATM 25 C CM7 MGP . . . B 2 26.58 16.415 0.905 1 53.38 ? CM7 MGP 1 A 1 HETATM 26 C C5 MGP . . . B 2 28.157 15.567 -0.879 1 52.8 ? C5 MGP 1 A 1 HETATM 27 C C6 MGP . . . B 2 27.934 14.192 -1.035 1 52.8 ? C6 MGP 1 A 1 HETATM 28 O O6 MGP . . . B 2 27.095 13.579 -0.371 1 53.07 ? O6 MGP 1 A 1 HETATM 29 N N1 MGP . . . B 2 28.695 13.498 -1.977 1 52.29 ? N1 MGP 1 A 1 HETATM 30 C C2 MGP . . . B 2 29.661 14.187 -2.724 1 52.9 ? C2 MGP 1 A 1 HETATM 31 N N2 MGP . . . B 2 30.411 13.558 -3.623 1 53.22 ? N2 MGP 1 A 1 HETATM 32 N N3 MGP . . . B 2 29.846 15.497 -2.553 1 52.33 ? N3 MGP 1 A 1 HETATM 33 C C4 MGP . . . B 2 29.136 16.187 -1.654 1 52.64 ? C4 MGP 1 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #