data_3CU4
#
_model_server_result.job_id            UhGe_bGgb0pHpx0Qjt8kPg 
_model_server_result.datetime_utc      '2024-12-21 15:50:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3cu4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":199}' 
#
_entry.id    3CU4 
#
_exptl.entry_id    3CU4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3CU4 
_cell.length_a            38.08 
_cell.length_b            40.19 
_cell.length_c            48.42 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CU4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 20 A HIS 39 1_555 B FE HEM . A HEM 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc2 A SD MET 60 A MET 79 1_555 B FE HEM . A HEM 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     3CU4 
_atom_sites.fract_transf_matrix[1][1]    0.026261 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024882 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020653 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 199 199 HEM HEM . 
C 3 HOH A 1 201 201 HOH WAT . 
C 3 HOH A 2 202 202 HOH WAT . 
C 3 HOH A 3 203 203 HOH WAT . 
C 3 HOH A 4 204 204 HOH WAT . 
C 3 HOH A 5 205 205 HOH WAT . 
C 3 HOH A 6 206 206 HOH WAT . 
C 3 HOH A 7 207 207 HOH WAT . 
C 3 HOH A 8 208 208 HOH WAT . 
C 3 HOH A 9 209 209 HOH WAT . 
C 3 HOH A 10 210 210 HOH WAT . 
C 3 HOH A 11 211 211 HOH WAT . 
C 3 HOH A 12 212 212 HOH WAT . 
C 3 HOH A 13 213 213 HOH WAT . 
C 3 HOH A 14 214 214 HOH WAT . 
C 3 HOH A 15 215 215 HOH WAT . 
C 3 HOH A 16 216 216 HOH WAT . 
C 3 HOH A 17 217 217 HOH WAT . 
C 3 HOH A 18 218 218 HOH WAT . 
C 3 HOH A 19 219 219 HOH WAT . 
C 3 HOH A 20 220 220 HOH WAT . 
C 3 HOH A 21 221 221 HOH WAT . 
C 3 HOH A 22 222 222 HOH WAT . 
C 3 HOH A 23 223 223 HOH WAT . 
C 3 HOH A 24 224 224 HOH WAT . 
C 3 HOH A 25 225 225 HOH WAT . 
C 3 HOH A 26 226 226 HOH WAT . 
C 3 HOH A 27 227 227 HOH WAT . 
C 3 HOH A 28 228 228 HOH WAT . 
C 3 HOH A 29 229 229 HOH WAT . 
C 3 HOH A 30 230 230 HOH WAT . 
C 3 HOH A 31 231 231 HOH WAT . 
C 3 HOH A 32 232 232 HOH WAT . 
C 3 HOH A 33 233 233 HOH WAT . 
C 3 HOH A 34 234 234 HOH WAT . 
C 3 HOH A 35 235 235 HOH WAT . 
C 3 HOH A 36 236 236 HOH WAT . 
C 3 HOH A 37 237 237 HOH WAT . 
C 3 HOH A 38 238 238 HOH WAT . 
C 3 HOH A 39 239 239 HOH WAT . 
C 3 HOH A 40 240 240 HOH WAT . 
C 3 HOH A 41 241 241 HOH WAT . 
C 3 HOH A 42 242 242 HOH WAT . 
C 3 HOH A 43 243 243 HOH WAT . 
C 3 HOH A 44 244 244 HOH WAT . 
C 3 HOH A 45 245 245 HOH WAT . 
C 3 HOH A 46 246 246 HOH WAT . 
C 3 HOH A 47 247 247 HOH WAT . 
C 3 HOH A 48 248 248 HOH WAT . 
C 3 HOH A 49 249 249 HOH WAT . 
C 3 HOH A 50 250 250 HOH WAT . 
C 3 HOH A 51 251 251 HOH WAT . 
C 3 HOH A 52 252 252 HOH WAT . 
C 3 HOH A 53 253 253 HOH WAT . 
C 3 HOH A 54 254 254 HOH WAT . 
C 3 HOH A 55 255 255 HOH WAT . 
C 3 HOH A 56 256 256 HOH WAT . 
C 3 HOH A 57 257 257 HOH WAT . 
C 3 HOH A 58 258 258 HOH WAT . 
C 3 HOH A 59 259 259 HOH WAT . 
C 3 HOH A 60 260 260 HOH WAT . 
C 3 HOH A 61 261 261 HOH WAT . 
C 3 HOH A 62 262 262 HOH WAT . 
C 3 HOH A 63 263 263 HOH WAT . 
C 3 HOH A 64 264 264 HOH WAT . 
C 3 HOH A 65 265 265 HOH WAT . 
C 3 HOH A 66 266 266 HOH WAT . 
C 3 HOH A 67 267 267 HOH WAT . 
C 3 HOH A 68 268 268 HOH WAT . 
C 3 HOH A 69 269 269 HOH WAT . 
C 3 HOH A 70 270 270 HOH WAT . 
C 3 HOH A 71 271 271 HOH WAT . 
C 3 HOH A 72 272 272 HOH WAT . 
C 3 HOH A 73 273 273 HOH WAT . 
C 3 HOH A 74 274 274 HOH WAT . 
C 3 HOH A 75 275 275 HOH WAT . 
C 3 HOH A 76 276 276 HOH WAT . 
C 3 HOH A 77 277 277 HOH WAT . 
C 3 HOH A 78 278 278 HOH WAT . 
C 3 HOH A 79 279 279 HOH WAT . 
C 3 HOH A 80 280 280 HOH WAT . 
C 3 HOH A 81 281 281 HOH WAT . 
C 3 HOH A 82 282 282 HOH WAT . 
C 3 HOH A 83 283 283 HOH WAT . 
C 3 HOH A 84 284 284 HOH WAT . 
C 3 HOH A 85 285 285 HOH WAT . 
C 3 HOH A 86 286 286 HOH WAT . 
C 3 HOH A 87 287 287 HOH WAT . 
C 3 HOH A 88 288 288 HOH WAT . 
C 3 HOH A 89 289 289 HOH WAT . 
C 3 HOH A 90 290 290 HOH WAT . 
C 3 HOH A 91 291 291 HOH WAT . 
C 3 HOH A 92 292 292 HOH WAT . 
C 3 HOH A 93 293 293 HOH WAT . 
C 3 HOH A 94 294 294 HOH WAT . 
C 3 HOH A 95 295 295 HOH WAT . 
C 3 HOH A 96 296 296 HOH WAT . 
C 3 HOH A 97 297 297 HOH WAT . 
C 3 HOH A 98 298 298 HOH WAT . 
C 3 HOH A 99 299 299 HOH WAT . 
C 3 HOH A 100 300 300 HOH WAT . 
C 3 HOH A 101 301 301 HOH WAT . 
C 3 HOH A 102 302 302 HOH WAT . 
C 3 HOH A 103 303 303 HOH WAT . 
C 3 HOH A 104 304 304 HOH WAT . 
C 3 HOH A 105 305 305 HOH WAT . 
C 3 HOH A 106 306 306 HOH WAT . 
C 3 HOH A 107 307 307 HOH WAT . 
C 3 HOH A 108 308 308 HOH WAT . 
C 3 HOH A 109 309 309 HOH WAT . 
C 3 HOH A 110 310 310 HOH WAT . 
C 3 HOH A 111 311 311 HOH WAT . 
C 3 HOH A 112 312 312 HOH WAT . 
C 3 HOH A 113 313 313 HOH WAT . 
C 3 HOH A 114 314 314 HOH WAT . 
C 3 HOH A 115 315 315 HOH WAT . 
C 3 HOH A 116 316 316 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 9.686 -5.228 6.562 1 4.65 ? CHA HEM 199 A 1 
HETATM 2 C CHB HEM . . . B 2 10.274 -1.124 4.087 1 3.61 ? CHB HEM 199 A 1 
HETATM 3 C CHC HEM . . . B 2 13.206 0.536 7.606 1 3.18 ? CHC HEM 199 A 1 
HETATM 4 C CHD HEM . . . B 2 12.97 -3.802 9.797 1 4.39 ? CHD HEM 199 A 1 
HETATM 5 C C1A HEM . . . B 2 9.64 -4.27 5.562 1 4.95 ? C1A HEM 199 A 1 
HETATM 6 C C2A HEM . . . B 2 8.865 -4.413 4.353 1 5.29 ? C2A HEM 199 A 1 
HETATM 7 C C3A HEM . . . B 2 8.946 -3.23 3.693 1 5.65 ? C3A HEM 199 A 1 
HETATM 8 C C4A HEM . . . B 2 9.845 -2.39 4.47 1 4.31 ? C4A HEM 199 A 1 
HETATM 9 C CMA HEM . . . B 2 8.227 -2.831 2.409 1 6.52 ? CMA HEM 199 A 1 
HETATM 10 C CAA HEM . . . B 2 8.13 -5.69 3.949 1 7.54 ? CAA HEM 199 A 1 
HETATM 11 C CBA HEM . . . B 2 6.744 -5.787 4.572 1 8.76 ? CBA HEM 199 A 1 
HETATM 12 C CGA HEM . . . B 2 6.088 -7.138 4.352 1 9.36 ? CGA HEM 199 A 1 
HETATM 13 O O1A HEM . . . B 2 6.427 -7.814 3.358 1 10.09 ? O1A HEM 199 A 1 
HETATM 14 O O2A HEM . . . B 2 5.22 -7.516 5.166 1 10.89 ? O2A HEM 199 A 1 
HETATM 15 C C1B HEM . . . B 2 11.163 -0.329 4.815 1 3.78 ? C1B HEM 199 A 1 
HETATM 16 C C2B HEM . . . B 2 11.573 1.004 4.426 1 3.15 ? C2B HEM 199 A 1 
HETATM 17 C C3B HEM . . . B 2 12.325 1.505 5.445 1 3.69 ? C3B HEM 199 A 1 
HETATM 18 C C4B HEM . . . B 2 12.431 0.462 6.446 1 3.53 ? C4B HEM 199 A 1 
HETATM 19 C CMB HEM . . . B 2 11.243 1.692 3.104 1 4.69 ? CMB HEM 199 A 1 
HETATM 20 C CAB HEM . . . B 2 12.94 2.899 5.548 1 3.47 ? CAB HEM 199 A 1 
HETATM 21 C CBB HEM . . . B 2 11.919 4.028 5.565 1 4.04 ? CBB HEM 199 A 1 
HETATM 22 C C1C HEM . . . B 2 13.404 -0.522 8.491 1 3.82 ? C1C HEM 199 A 1 
HETATM 23 C C2C HEM . . . B 2 14.329 -0.473 9.6 1 3.86 ? C2C HEM 199 A 1 
HETATM 24 C C3C HEM . . . B 2 14.316 -1.719 10.16 1 4.75 ? C3C HEM 199 A 1 
HETATM 25 C C4C HEM . . . B 2 13.35 -2.513 9.434 1 4.45 ? C4C HEM 199 A 1 
HETATM 26 C CMC HEM . . . B 2 15.155 0.727 10.048 1 4.72 ? CMC HEM 199 A 1 
HETATM 27 C CAC HEM . . . B 2 15.3 -2.279 11.19 1 5.85 ? CAC HEM 199 A 1 
HETATM 28 C CBC HEM . . . B 2 15.316 -1.609 12.558 1 6.74 ? CBC HEM 199 A 1 
HETATM 29 C C1D HEM . . . B 2 11.977 -4.516 9.147 1 5.05 ? C1D HEM 199 A 1 
HETATM 30 C C2D HEM . . . B 2 11.427 -5.771 9.628 1 4.88 ? C2D HEM 199 A 1 
HETATM 31 C C3D HEM . . . B 2 10.466 -6.142 8.758 1 5.15 ? C3D HEM 199 A 1 
HETATM 32 C C4D HEM . . . B 2 10.431 -5.131 7.721 1 4.28 ? C4D HEM 199 A 1 
HETATM 33 C CMD HEM . . . B 2 11.778 -6.499 10.92 1 6.46 ? CMD HEM 199 A 1 
HETATM 34 C CAD HEM . . . B 2 9.544 -7.341 8.933 1 5.3 ? CAD HEM 199 A 1 
HETATM 35 C CBD HEM . . . B 2 8.184 -6.951 9.495 1 7.49 ? CBD HEM 199 A 1 
HETATM 36 C CGD HEM . . . B 2 7.292 -8.15 9.747 1 7.77 ? CGD HEM 199 A 1 
HETATM 37 O O1D HEM . . . B 2 6.083 -8.057 9.459 1 8.93 ? O1D HEM 199 A 1 
HETATM 38 O O2D HEM . . . B 2 7.796 -9.18 10.241 1 9.18 ? O2D HEM 199 A 1 
HETATM 39 N NA HEM . . . B 2 10.267 -3.037 5.617 1 4.35 ? NA HEM 199 A 1 
HETATM 40 N NB HEM . . . B 2 11.713 -0.668 6.049 1 3.91 ? NB HEM 199 A 1 
HETATM 41 N NC HEM . . . B 2 12.81 -1.772 8.39 1 4.43 ? NC HEM 199 A 1 
HETATM 42 N ND HEM . . . B 2 11.318 -4.098 8 1 3.9 ? ND HEM 199 A 1 
HETATM 43 FE FE HEM . . . B 2 11.534 -2.385 7.006 1 3.38 ? FE HEM 199 A 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#