data_3CUP # _model_server_result.job_id 3Hz1u_cZMbrHnW7f-jeXWw _model_server_result.datetime_utc '2024-11-17 14:37:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cup # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 3CUP # _exptl.entry_id 3CUP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CUP _cell.length_a 55.832 _cell.length_b 55.832 _cell.length_c 338.834 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CUP _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 111 A CYS 107 1_555 A SG CYS 167 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 42 B CYS 256 1_555 B SG CYS 104 B CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 143 B CYS 357 1_555 B SG CYS 199 B CYS 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 82 A ASN 78 1_555 C C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 268 n n C1 O1 NAG sing 269 n n C1 O5 NAG sing 270 n n C1 H1 NAG sing 271 n n C2 C3 NAG sing 272 n n C2 N2 NAG sing 273 n n C2 H2 NAG sing 274 n n C3 C4 NAG sing 275 n n C3 O3 NAG sing 276 n n C3 H3 NAG sing 277 n n C4 C5 NAG sing 278 n n C4 O4 NAG sing 279 n n C4 H4 NAG sing 280 n n C5 C6 NAG sing 281 n n C5 O5 NAG sing 282 n n C5 H5 NAG sing 283 n n C6 O6 NAG sing 284 n n C6 H61 NAG sing 285 n n C6 H62 NAG sing 286 n n C7 C8 NAG sing 287 n n C7 N2 NAG sing 288 n n C7 O7 NAG doub 289 n n C8 H81 NAG sing 290 n n C8 H82 NAG sing 291 n n C8 H83 NAG sing 292 n n N2 HN2 NAG sing 293 n n O1 HO1 NAG sing 294 n n O3 HO3 NAG sing 295 n n O4 HO4 NAG sing 296 n n O6 HO6 NAG sing 297 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3CUP _atom_sites.fract_transf_matrix[1][1] 0.017911 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017911 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 301 301 NAG NAG . D 4 EPE A 1 302 302 EPE EPE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 45.705 13.896 28.875 1 98.8 ? C1 NAG 301 A 1 HETATM 2 C C2 NAG . . . C 3 45.166 12.46 28.926 1 98.85 ? C2 NAG 301 A 1 HETATM 3 C C3 NAG . . . C 3 45.168 11.741 27.579 1 101.18 ? C3 NAG 301 A 1 HETATM 4 C C4 NAG . . . C 3 44.694 12.661 26.465 1 104.08 ? C4 NAG 301 A 1 HETATM 5 C C5 NAG . . . C 3 45.565 13.909 26.474 1 103.43 ? C5 NAG 301 A 1 HETATM 6 C C6 NAG . . . C 3 45.289 14.824 25.28 1 106.54 ? C6 NAG 301 A 1 HETATM 7 C C7 NAG . . . C 3 45.394 10.78 30.677 1 95.31 ? C7 NAG 301 A 1 HETATM 8 C C8 NAG . . . C 3 46.098 9.461 30.796 1 94.38 ? C8 NAG 301 A 1 HETATM 9 N N2 NAG . . . C 3 45.951 11.679 29.867 1 96.16 ? N2 NAG 301 A 1 HETATM 10 O O3 NAG . . . C 3 44.334 10.604 27.649 1 101.98 ? O3 NAG 301 A 1 HETATM 11 O O4 NAG . . . C 3 44.784 12 25.222 1 106.34 ? O4 NAG 301 A 1 HETATM 12 O O5 NAG . . . C 3 45.377 14.606 27.691 1 101.65 ? O5 NAG 301 A 1 HETATM 13 O O6 NAG . . . C 3 43.91 15.096 25.17 1 108.65 ? O6 NAG 301 A 1 HETATM 14 O O7 NAG . . . C 3 44.357 10.99 31.305 1 95.52 ? O7 NAG 301 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 14 #