data_3CWQ # _model_server_result.job_id Z2lT36FNSPRiTmvDfcpdKg _model_server_result.datetime_utc '2024-11-14 20:16:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cwq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 3CWQ # _exptl.entry_id 3CWQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CWQ _cell.length_a 63.609 _cell.length_b 70.142 _cell.length_c 112.209 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CWQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N ILE 2 A ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale2 A C LEU 108 A LEU 108 1_555 A N MSE 109 A MSE 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C MSE 109 A MSE 109 1_555 A N LEU 110 A LEU 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 B C MSE 1 B MSE 1 1_555 B N ILE 2 B ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale5 B C LEU 108 B LEU 108 1_555 B N MSE 109 B MSE 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 B C MSE 109 B MSE 109 1_555 B N LEU 110 B LEU 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 3CWQ _atom_sites.fract_transf_matrix[1][1] 0.015721 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014257 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 301 301 ADP ADP . D 2 ADP B 1 301 301 ADP ADP . E 3 HOH A 1 302 1 HOH HOH . E 3 HOH A 2 303 8 HOH HOH . E 3 HOH A 3 304 11 HOH HOH . E 3 HOH A 4 305 14 HOH HOH . E 3 HOH A 5 306 17 HOH HOH . E 3 HOH A 6 307 18 HOH HOH . E 3 HOH A 7 308 19 HOH HOH . E 3 HOH A 8 309 20 HOH HOH . E 3 HOH A 9 310 22 HOH HOH . E 3 HOH A 10 311 23 HOH HOH . E 3 HOH A 11 312 24 HOH HOH . E 3 HOH A 12 313 27 HOH HOH . E 3 HOH A 13 314 28 HOH HOH . E 3 HOH A 14 315 31 HOH HOH . E 3 HOH A 15 316 32 HOH HOH . E 3 HOH A 16 317 33 HOH HOH . E 3 HOH A 17 318 34 HOH HOH . E 3 HOH A 18 319 35 HOH HOH . E 3 HOH A 19 320 36 HOH HOH . E 3 HOH A 20 321 37 HOH HOH . E 3 HOH A 21 322 26 HOH HOH . F 3 HOH B 1 302 2 HOH HOH . F 3 HOH B 2 303 3 HOH HOH . F 3 HOH B 3 304 4 HOH HOH . F 3 HOH B 4 305 5 HOH HOH . F 3 HOH B 5 306 6 HOH HOH . F 3 HOH B 6 307 7 HOH HOH . F 3 HOH B 7 308 9 HOH HOH . F 3 HOH B 8 309 10 HOH HOH . F 3 HOH B 9 310 12 HOH HOH . F 3 HOH B 10 311 13 HOH HOH . F 3 HOH B 11 312 15 HOH HOH . F 3 HOH B 12 313 16 HOH HOH . F 3 HOH B 13 314 21 HOH HOH . F 3 HOH B 14 315 25 HOH HOH . F 3 HOH B 15 317 29 HOH HOH . F 3 HOH B 16 318 30 HOH HOH . F 3 HOH B 17 319 38 HOH HOH . F 3 HOH B 18 320 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . D 2 72.097 55.05 60.291 1 45.4 ? PB ADP 301 B 1 HETATM 2 O O1B ADP . . . D 2 73.474 54.575 60.371 1 46.35 ? O1B ADP 301 B 1 HETATM 3 O O2B ADP . . . D 2 71.598 55.595 61.62 1 54.94 ? O2B ADP 301 B 1 HETATM 4 O O3B ADP . . . D 2 71.634 53.779 59.676 1 53.32 ? O3B ADP 301 B 1 HETATM 5 P PA ADP . . . D 2 72.671 55.885 57.71 1 39.07 ? PA ADP 301 B 1 HETATM 6 O O1A ADP . . . D 2 74.18 55.609 57.772 1 43.94 ? O1A ADP 301 B 1 HETATM 7 O O2A ADP . . . D 2 71.842 54.925 56.934 1 41.95 ? O2A ADP 301 B 1 HETATM 8 O O3A ADP . . . D 2 72.158 56.214 59.212 1 45.78 ? O3A ADP 301 B 1 HETATM 9 O O5' ADP . . . D 2 72.395 57.328 57.01 1 44.64 ? O5' ADP 301 B 1 HETATM 10 C C5' ADP . . . D 2 71.042 57.775 56.814 1 42.57 ? C5' ADP 301 B 1 HETATM 11 C C4' ADP . . . D 2 70.912 58.704 55.633 1 39.58 ? C4' ADP 301 B 1 HETATM 12 O O4' ADP . . . D 2 71.909 59.685 55.907 1 41.83 ? O4' ADP 301 B 1 HETATM 13 C C3' ADP . . . D 2 71.287 58.018 54.345 1 43.38 ? C3' ADP 301 B 1 HETATM 14 O O3' ADP . . . D 2 70.299 58.412 53.389 1 47.22 ? O3' ADP 301 B 1 HETATM 15 C C2' ADP . . . D 2 72.706 58.512 53.995 1 42.49 ? C2' ADP 301 B 1 HETATM 16 O O2' ADP . . . D 2 72.85 58.86 52.628 1 47.19 ? O2' ADP 301 B 1 HETATM 17 C C1' ADP . . . D 2 72.805 59.821 54.767 1 40.4 ? C1' ADP 301 B 1 HETATM 18 N N9 ADP . . . D 2 74.163 60.169 55.246 1 40.31 ? N9 ADP 301 B 1 HETATM 19 C C8 ADP . . . D 2 74.902 59.441 56.097 1 36.92 ? C8 ADP 301 B 1 HETATM 20 N N7 ADP . . . D 2 76.047 60.078 56.382 1 33.77 ? N7 ADP 301 B 1 HETATM 21 C C5 ADP . . . D 2 76.115 61.209 55.7 1 36.63 ? C5 ADP 301 B 1 HETATM 22 C C6 ADP . . . D 2 77.095 62.329 55.588 1 39.8 ? C6 ADP 301 B 1 HETATM 23 N N6 ADP . . . D 2 78.321 62.371 56.231 1 37.64 ? N6 ADP 301 B 1 HETATM 24 N N1 ADP . . . D 2 76.714 63.318 54.764 1 38.38 ? N1 ADP 301 B 1 HETATM 25 C C2 ADP . . . D 2 75.536 63.3 54.127 1 37.32 ? C2 ADP 301 B 1 HETATM 26 N N3 ADP . . . D 2 74.61 62.345 54.216 1 35.11 ? N3 ADP 301 B 1 HETATM 27 C C4 ADP . . . D 2 74.85 61.283 54.966 1 38.05 ? C4 ADP 301 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #