data_3CX9 # _model_server_result.job_id ix_o6dXbZBA6DPnYFOGWeg _model_server_result.datetime_utc '2024-10-19 16:46:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cx9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2001}' # _entry.id 3CX9 # _exptl.entry_id 3CX9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 453.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.69 _cell.angle_gamma 90 _cell.entry_id 3CX9 _cell.length_a 183.888 _cell.length_b 39.015 _cell.length_c 95.633 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CX9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 53 1_555 A SG CYS 60 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf2 A SG CYS 73 A CYS 75 1_555 A SG CYS 89 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 A SG CYS 88 A CYS 90 1_555 A SG CYS 99 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf4 A SG CYS 122 A CYS 124 1_555 A SG CYS 167 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf5 A SG CYS 166 A CYS 168 1_555 A SG CYS 175 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 A SG CYS 198 A CYS 200 1_555 A SG CYS 244 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf7 A SG CYS 243 A CYS 245 1_555 A SG CYS 251 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf8 A SG CYS 263 A CYS 265 1_555 A SG CYS 277 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf9 A SG CYS 276 A CYS 278 1_555 A SG CYS 287 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.486 ? disulf ? disulf10 A SG CYS 314 A CYS 316 1_555 A SG CYS 359 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf11 A SG CYS 358 A CYS 360 1_555 A SG CYS 367 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? disulf ? disulf12 A SG CYS 390 A CYS 392 1_555 A SG CYS 436 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf13 A SG CYS 435 A CYS 437 1_555 A SG CYS 446 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf14 A SG CYS 459 A CYS 461 1_555 A SG CYS 475 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf15 A SG CYS 474 A CYS 476 1_555 A SG CYS 485 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? disulf ? disulf16 A SG CYS 512 A CYS 514 1_555 A SG CYS 557 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf17 A SG CYS 556 A CYS 558 1_555 A SG CYS 565 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? # _chem_comp.formula 'C21 H44 N O7 P' _chem_comp.formula_weight 453.55 _chem_comp.id LPX _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O7 C6 LPX doub 192 n n C6 O6 LPX sing 193 n n C6 C7 LPX sing 194 n n O6 C5 LPX sing 195 n n C5 C4 LPX sing 196 n n C4 O5 LPX sing 197 n n C4 C3 LPX sing 198 n n C3 O1 LPX sing 199 n n O1 P1 LPX sing 200 n n P1 O3 LPX sing 201 n n P1 O2 LPX sing 202 n n P1 O4 LPX doub 203 n n O2 C1 LPX sing 204 n n C1 C2 LPX sing 205 n n C2 N1 LPX sing 206 n n C7 C8 LPX sing 207 n n C8 C9 LPX sing 208 n n C9 C10 LPX sing 209 n n C10 C11 LPX sing 210 n n C11 C12 LPX sing 211 n n C12 C13 LPX sing 212 n n C13 C14 LPX sing 213 n n C14 C15 LPX sing 214 n n C15 C16 LPX sing 215 n n C16 C17 LPX sing 216 n n C17 C18 LPX sing 217 n n C18 C19 LPX sing 218 n n C19 C20 LPX sing 219 n n C20 C21 LPX sing 220 n n C5 H5 LPX sing 221 n n C5 H5A LPX sing 222 n n C4 H4 LPX sing 223 n n O5 HO5 LPX sing 224 n n C3 H3 LPX sing 225 n n C3 H3A LPX sing 226 n n O3 HO3 LPX sing 227 n n C1 H1 LPX sing 228 n n C1 H1A LPX sing 229 n n C2 H2 LPX sing 230 n n C2 H2A LPX sing 231 n n N1 HN1 LPX sing 232 n n N1 HN1A LPX sing 233 n n C7 H7 LPX sing 234 n n C7 H7A LPX sing 235 n n C8 H8 LPX sing 236 n n C8 H8A LPX sing 237 n n C9 H9 LPX sing 238 n n C9 H9A LPX sing 239 n n C10 H10 LPX sing 240 n n C10 H10A LPX sing 241 n n C11 H11 LPX sing 242 n n C11 H11A LPX sing 243 n n C12 H12 LPX sing 244 n n C12 H12A LPX sing 245 n n C13 H13 LPX sing 246 n n C13 H13A LPX sing 247 n n C14 H14 LPX sing 248 n n C14 H14A LPX sing 249 n n C15 H15 LPX sing 250 n n C15 H15A LPX sing 251 n n C16 H16 LPX sing 252 n n C16 H16A LPX sing 253 n n C17 H17 LPX sing 254 n n C17 H17A LPX sing 255 n n C18 H18 LPX sing 256 n n C18 H18A LPX sing 257 n n C19 H19 LPX sing 258 n n C19 H19A LPX sing 259 n n C20 H20 LPX sing 260 n n C20 H20A LPX sing 261 n n C21 H21 LPX sing 262 n n C21 H21A LPX sing 263 n n C21 H21B LPX sing 264 n n # _atom_sites.entry_id 3CX9 _atom_sites.fract_transf_matrix[1][1] 0.005438 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001425 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01081 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MYR A 1 1002 1002 MYR MYR . C 2 MYR A 1 1003 1003 MYR MYR . D 2 MYR A 1 1004 1004 MYR MYR . E 2 MYR A 1 1005 1005 MYR MYR . F 2 MYR A 1 1006 1006 MYR MYR . G 3 LPX A 1 2001 2001 LPX LPX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O7 LPX . . . G 3 -35.421 4.807 -11.601 1 94.11 ? O7 LPX 2001 A 1 HETATM 2 C C6 LPX . . . G 3 -35.691 3.931 -10.8 1 89.86 ? C6 LPX 2001 A 1 HETATM 3 O O6 LPX . . . G 3 -35.277 2.585 -11.126 1 90.09 ? O6 LPX 2001 A 1 HETATM 4 C C5 LPX . . . G 3 -36.14 1.517 -10.789 1 90.69 ? C5 LPX 2001 A 1 HETATM 5 C C4 LPX . . . G 3 -35.593 0.22 -11.362 1 91.17 ? C4 LPX 2001 A 1 HETATM 6 O O5 LPX . . . G 3 -34.239 0.419 -11.765 1 93.52 ? O5 LPX 2001 A 1 HETATM 7 C C3 LPX . . . G 3 -36.36 -0.243 -12.577 1 90.38 ? C3 LPX 2001 A 1 HETATM 8 O O1 LPX . . . G 3 -35.46 -0.342 -13.66 1 91.61 ? O1 LPX 2001 A 1 HETATM 9 P P1 LPX . . . G 3 -35.816 0.104 -15.168 1 95.54 ? P1 LPX 2001 A 1 HETATM 10 O O3 LPX . . . G 3 -35.609 -1.051 -16.159 1 94.76 ? O3 LPX 2001 A 1 HETATM 11 O O2 LPX . . . G 3 -34.681 1.214 -15.469 1 94.01 ? O2 LPX 2001 A 1 HETATM 12 C C1 LPX . . . G 3 -34.98 2.303 -16.339 1 93.89 ? C1 LPX 2001 A 1 HETATM 13 C C2 LPX . . . G 3 -33.688 2.805 -16.957 1 94.32 ? C2 LPX 2001 A 1 HETATM 14 N N1 LPX . . . G 3 -33.175 1.795 -17.864 1 94.68 ? N1 LPX 2001 A 1 HETATM 15 O O4 LPX . . . G 3 -37.162 0.807 -15.129 1 97.33 ? O4 LPX 2001 A 1 HETATM 16 C C7 LPX . . . G 3 -36.444 4.263 -9.526 1 87.99 ? C7 LPX 2001 A 1 HETATM 17 C C8 LPX . . . G 3 -36.957 5.71 -9.564 1 86.04 ? C8 LPX 2001 A 1 HETATM 18 C C9 LPX . . . G 3 -36.025 6.769 -8.982 1 84.13 ? C9 LPX 2001 A 1 HETATM 19 C C10 LPX . . . G 3 -34.584 6.318 -8.804 1 83.28 ? C10 LPX 2001 A 1 HETATM 20 C C11 LPX . . . G 3 -34.104 6.661 -7.424 1 82.33 ? C11 LPX 2001 A 1 HETATM 21 C C12 LPX . . . G 3 -33.163 7.838 -7.488 1 83.4 ? C12 LPX 2001 A 1 HETATM 22 C C13 LPX . . . G 3 -31.853 7.457 -6.837 1 85.41 ? C13 LPX 2001 A 1 HETATM 23 C C14 LPX . . . G 3 -30.641 7.571 -7.741 1 86.44 ? C14 LPX 2001 A 1 HETATM 24 C C15 LPX . . . G 3 -30.182 6.172 -8.155 1 88.59 ? C15 LPX 2001 A 1 HETATM 25 C C16 LPX . . . G 3 -28.807 6.159 -8.837 1 90.26 ? C16 LPX 2001 A 1 HETATM 26 C C17 LPX . . . G 3 -28.501 5.127 -9.896 1 92.77 ? C17 LPX 2001 A 1 HETATM 27 C C18 LPX . . . G 3 -29.753 4.39 -10.353 1 95.34 ? C18 LPX 2001 A 1 HETATM 28 C C19 LPX . . . G 3 -29.522 2.881 -10.311 1 96.66 ? C19 LPX 2001 A 1 HETATM 29 C C20 LPX . . . G 3 -30.776 2.128 -9.901 1 97 ? C20 LPX 2001 A 1 HETATM 30 C C21 LPX . . . G 3 -31.839 2.986 -9.215 1 97.31 ? C21 LPX 2001 A 1 # _model_server_stats.io_time_ms 89 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #