data_3CXQ # _model_server_result.job_id cI4u5lv3XSoOWiXV4QYkBA _model_server_result.datetime_utc '2024-11-07 01:35:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cxq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":185}' # _entry.id 3CXQ # _exptl.entry_id 3CXQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 259.151 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CXQ _cell.length_a 54.136 _cell.length_b 54.136 _cell.length_c 138.638 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CXQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 N O8 P' _chem_comp.formula_weight 259.151 _chem_comp.id GLP _chem_comp.mon_nstd_flag n _chem_comp.name 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms 'GLUCOSAMINE 6-PHOSPHATE;6-O-phosphono-alpha-D-glucosamine;2-amino-2-deoxy-6-O-phosphono-alpha-D-glucose;2-amino-2-deoxy-6-O-phosphono-D-glucose;2-amino-2-deoxy-6-O-phosphono-glucose' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GLP sing 102 n n C1 O1 GLP sing 103 n n C1 O5 GLP sing 104 n n C1 H1 GLP sing 105 n n C2 C3 GLP sing 106 n n C2 N2 GLP sing 107 n n C2 H2 GLP sing 108 n n C3 C4 GLP sing 109 n n C3 O3 GLP sing 110 n n C3 H3 GLP sing 111 n n C4 C5 GLP sing 112 n n C4 O4 GLP sing 113 n n C4 H4 GLP sing 114 n n C5 C6 GLP sing 115 n n C5 O5 GLP sing 116 n n C5 H5 GLP sing 117 n n C6 O6 GLP sing 118 n n C6 H61 GLP sing 119 n n C6 H62 GLP sing 120 n n O1 HO1 GLP sing 121 n n N2 HN21 GLP sing 122 n n N2 HN22 GLP sing 123 n n O3 HO3 GLP sing 124 n n O4 HO4 GLP sing 125 n n O6 P GLP sing 126 n n P O1P GLP doub 127 n n P O2P GLP sing 128 n n P O3P GLP sing 129 n n O2P HOP2 GLP sing 130 n n O3P HOP3 GLP sing 131 n n # _pdbx_chem_comp_identifier.comp_id GLP _pdbx_chem_comp_identifier.identifier a-D-GlcpN6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3CXQ _atom_sites.fract_transf_matrix[1][1] 0.018472 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007213 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLP A 1 185 1 GLP GLP . C 3 HOH A 1 186 3 HOH HOH . C 3 HOH A 2 187 4 HOH HOH . C 3 HOH A 3 188 5 HOH HOH . C 3 HOH A 4 189 7 HOH HOH . C 3 HOH A 5 190 9 HOH HOH . C 3 HOH A 6 191 10 HOH HOH . C 3 HOH A 7 192 11 HOH HOH . C 3 HOH A 8 193 13 HOH HOH . C 3 HOH A 9 194 14 HOH HOH . C 3 HOH A 10 195 16 HOH HOH . C 3 HOH A 11 196 18 HOH HOH . C 3 HOH A 12 197 20 HOH HOH . C 3 HOH A 13 198 21 HOH HOH . C 3 HOH A 14 199 22 HOH HOH . C 3 HOH A 15 200 23 HOH HOH . C 3 HOH A 16 201 24 HOH HOH . C 3 HOH A 17 202 25 HOH HOH . C 3 HOH A 18 203 26 HOH HOH . C 3 HOH A 19 204 28 HOH HOH . C 3 HOH A 20 205 29 HOH HOH . C 3 HOH A 21 206 30 HOH HOH . C 3 HOH A 22 207 31 HOH HOH . C 3 HOH A 23 208 33 HOH HOH . C 3 HOH A 24 209 34 HOH HOH . C 3 HOH A 25 210 35 HOH HOH . C 3 HOH A 26 211 36 HOH HOH . C 3 HOH A 27 212 42 HOH HOH . C 3 HOH A 28 213 45 HOH HOH . C 3 HOH A 29 214 46 HOH HOH . C 3 HOH A 30 215 49 HOH HOH . C 3 HOH A 31 216 50 HOH HOH . C 3 HOH A 32 217 51 HOH HOH . C 3 HOH A 33 218 55 HOH HOH . C 3 HOH A 34 219 56 HOH HOH . C 3 HOH A 35 220 58 HOH HOH . C 3 HOH A 36 221 59 HOH HOH . C 3 HOH A 37 222 62 HOH HOH . C 3 HOH A 38 223 63 HOH HOH . C 3 HOH A 39 224 64 HOH HOH . C 3 HOH A 40 225 65 HOH HOH . C 3 HOH A 41 226 66 HOH HOH . C 3 HOH A 42 227 67 HOH HOH . C 3 HOH A 43 228 68 HOH HOH . C 3 HOH A 44 229 69 HOH HOH . C 3 HOH A 45 230 70 HOH HOH . C 3 HOH A 46 231 71 HOH HOH . C 3 HOH A 47 232 72 HOH HOH . C 3 HOH A 48 233 73 HOH HOH . C 3 HOH A 49 234 74 HOH HOH . C 3 HOH A 50 235 75 HOH HOH . C 3 HOH A 51 236 76 HOH HOH . C 3 HOH A 52 237 77 HOH HOH . C 3 HOH A 53 238 78 HOH HOH . C 3 HOH A 54 239 79 HOH HOH . C 3 HOH A 55 240 80 HOH HOH . C 3 HOH A 56 241 81 HOH HOH . C 3 HOH A 57 242 82 HOH HOH . C 3 HOH A 58 243 83 HOH HOH . C 3 HOH A 59 244 84 HOH HOH . C 3 HOH A 60 245 85 HOH HOH . C 3 HOH A 61 246 86 HOH HOH . C 3 HOH A 62 247 87 HOH HOH . C 3 HOH A 63 248 88 HOH HOH . C 3 HOH A 64 249 89 HOH HOH . C 3 HOH A 65 250 90 HOH HOH . C 3 HOH A 66 251 91 HOH HOH . C 3 HOH A 67 252 92 HOH HOH . C 3 HOH A 68 253 93 HOH HOH . C 3 HOH A 69 254 94 HOH HOH . C 3 HOH A 70 255 95 HOH HOH . C 3 HOH A 71 256 96 HOH HOH . C 3 HOH A 72 257 97 HOH HOH . C 3 HOH A 73 258 98 HOH HOH . C 3 HOH A 74 259 99 HOH HOH . C 3 HOH A 75 260 100 HOH HOH . C 3 HOH A 76 261 101 HOH HOH . C 3 HOH A 77 262 102 HOH HOH . C 3 HOH A 78 263 103 HOH HOH . C 3 HOH A 79 264 104 HOH HOH . C 3 HOH A 80 265 105 HOH HOH . C 3 HOH A 81 266 106 HOH HOH . C 3 HOH A 82 267 107 HOH HOH . C 3 HOH A 83 268 108 HOH HOH . C 3 HOH A 84 269 109 HOH HOH . C 3 HOH A 85 270 110 HOH HOH . C 3 HOH A 86 271 111 HOH HOH . C 3 HOH A 87 272 112 HOH HOH . C 3 HOH A 88 273 113 HOH HOH . C 3 HOH A 89 274 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLP . . . B 2 -13.822 -10.124 -9.519 1 24.88 ? C1 GLP 185 A 1 HETATM 2 C C2 GLP . . . B 2 -12.308 -10.062 -9.291 1 24.74 ? C2 GLP 185 A 1 HETATM 3 C C3 GLP . . . B 2 -11.859 -8.746 -8.655 1 24.23 ? C3 GLP 185 A 1 HETATM 4 C C4 GLP . . . B 2 -12.457 -7.553 -9.392 1 23.91 ? C4 GLP 185 A 1 HETATM 5 C C5 GLP . . . B 2 -13.979 -7.695 -9.421 1 24.49 ? C5 GLP 185 A 1 HETATM 6 C C6 GLP . . . B 2 -14.604 -6.54 -10.188 1 24.9 ? C6 GLP 185 A 1 HETATM 7 O O1 GLP . . . B 2 -14.468 -10.363 -8.273 1 26.84 ? O1 GLP 185 A 1 HETATM 8 N N2 GLP . . . B 2 -11.882 -11.159 -8.446 1 22.52 ? N2 GLP 185 A 1 HETATM 9 O O3 GLP . . . B 2 -10.429 -8.667 -8.668 1 24.1 ? O3 GLP 185 A 1 HETATM 10 O O4 GLP . . . B 2 -12.068 -6.344 -8.736 1 21.29 ? O4 GLP 185 A 1 HETATM 11 O O5 GLP . . . B 2 -14.346 -8.914 -10.088 1 24.82 ? O5 GLP 185 A 1 HETATM 12 O O6 GLP . . . B 2 -15.985 -6.518 -9.87 1 25.92 ? O6 GLP 185 A 1 HETATM 13 P P GLP . . . B 2 -16.708 -5.156 -9.404 1 26.01 ? P GLP 185 A 1 HETATM 14 O O1P GLP . . . B 2 -16.707 -4.359 -10.684 1 26.96 ? O1P GLP 185 A 1 HETATM 15 O O2P GLP . . . B 2 -15.873 -4.585 -8.285 1 26.13 ? O2P GLP 185 A 1 HETATM 16 O O3P GLP . . . B 2 -18.057 -5.622 -8.954 1 25.88 ? O3P GLP 185 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 16 #