data_3CXW # _model_server_result.job_id IUwUHVguGmDju92lMGp0lw _model_server_result.datetime_utc '2025-01-10 12:40:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3cxw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 3CXW # _exptl.entry_id 3CXW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.268 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(4R)-7,8-dichloro-1',9-dimethyl-1-oxo-1,2,4,9-tetrahydrospiro[beta-carboline-3,4'-piperidine]-4-carbonitrile" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3CXW _cell.length_a 98.371 _cell.length_b 98.371 _cell.length_c 81.332 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CXW _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H18 Cl2 N4 O' _chem_comp.formula_weight 377.268 _chem_comp.id 7CP _chem_comp.mon_nstd_flag . _chem_comp.name "(4R)-7,8-dichloro-1',9-dimethyl-1-oxo-1,2,4,9-tetrahydrospiro[beta-carboline-3,4'-piperidine]-4-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1L C1J 7CP sing 1 n n C1L C1Y 7CP sing 2 n n C1J N1W 7CP sing 3 n n N1W C1A 7CP sing 4 n n N1W C1K 7CP sing 5 n n C1K C1M 7CP sing 6 n n C1M C1Y 7CP sing 7 n n C1Y N1N 7CP sing 8 n n C1Y C1V 7CP sing 9 n n N1N C1O 7CP sing 10 n n C1O O1D 7CP doub 11 n n C1O C1R 7CP sing 12 n n C1R N1X 7CP sing 13 n y C1R C1S 7CP doub 14 n y N1X C1B 7CP sing 15 n n N1X C1U 7CP sing 16 n y C1U C1Q 7CP doub 17 n y C1U C1T 7CP sing 18 n y C1Q CL1F 7CP sing 19 n n C1Q C1P 7CP sing 20 n y C1P CL1E 7CP sing 21 n n C1P C1H 7CP doub 22 n y C1H C1I 7CP sing 23 n y C1I C1T 7CP doub 24 n y C1T C1S 7CP sing 25 n y C1S C1V 7CP sing 26 n n C1V C1G 7CP sing 27 n n C1G N1C 7CP trip 28 n n C1L H1L 7CP sing 29 n n C1L H1LA 7CP sing 30 n n C1J H1J 7CP sing 31 n n C1J H1JA 7CP sing 32 n n C1A H1A 7CP sing 33 n n C1A H1AA 7CP sing 34 n n C1A H1AB 7CP sing 35 n n C1K H1K 7CP sing 36 n n C1K H1KA 7CP sing 37 n n C1M H1M 7CP sing 38 n n C1M H1MA 7CP sing 39 n n N1N HN1N 7CP sing 40 n n C1B H1B 7CP sing 41 n n C1B H1BA 7CP sing 42 n n C1B H1BB 7CP sing 43 n n C1H H1H 7CP sing 44 n n C1I H1I 7CP sing 45 n n C1V H1V 7CP sing 46 n n # _atom_sites.entry_id 3CXW _atom_sites.fract_transf_matrix[1][1] 0.010166 _atom_sites.fract_transf_matrix[1][2] 0.005869 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011738 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL A 1 401 401 CL CL . D 4 7CP A 1 501 501 7CP 7CP . E 5 HOH A 1 601 601 HOH HOH . E 5 HOH A 2 602 6 HOH HOH . E 5 HOH A 3 603 7 HOH HOH . E 5 HOH A 4 604 8 HOH HOH . E 5 HOH A 5 605 10 HOH HOH . E 5 HOH A 6 606 11 HOH HOH . E 5 HOH A 7 607 12 HOH HOH . E 5 HOH A 8 608 13 HOH HOH . E 5 HOH A 9 609 17 HOH HOH . E 5 HOH A 10 610 18 HOH HOH . E 5 HOH A 11 611 19 HOH HOH . E 5 HOH A 12 612 21 HOH HOH . E 5 HOH A 13 613 22 HOH HOH . E 5 HOH A 14 614 24 HOH HOH . E 5 HOH A 15 615 29 HOH HOH . E 5 HOH A 16 616 30 HOH HOH . E 5 HOH A 17 617 32 HOH HOH . E 5 HOH A 18 618 35 HOH HOH . E 5 HOH A 19 619 36 HOH HOH . E 5 HOH A 20 620 38 HOH HOH . E 5 HOH A 21 621 42 HOH HOH . E 5 HOH A 22 622 44 HOH HOH . E 5 HOH A 23 623 49 HOH HOH . E 5 HOH A 24 624 50 HOH HOH . E 5 HOH A 25 625 51 HOH HOH . E 5 HOH A 26 626 52 HOH HOH . E 5 HOH A 27 627 54 HOH HOH . E 5 HOH A 28 628 55 HOH HOH . E 5 HOH A 29 629 58 HOH HOH . E 5 HOH A 30 630 60 HOH HOH . E 5 HOH A 31 631 61 HOH HOH . E 5 HOH A 32 632 62 HOH HOH . E 5 HOH A 33 633 65 HOH HOH . E 5 HOH A 34 634 66 HOH HOH . E 5 HOH A 35 635 68 HOH HOH . E 5 HOH A 36 636 69 HOH HOH . E 5 HOH A 37 637 71 HOH HOH . E 5 HOH A 38 638 73 HOH HOH . E 5 HOH A 39 639 74 HOH HOH . E 5 HOH A 40 640 75 HOH HOH . E 5 HOH A 41 641 76 HOH HOH . E 5 HOH A 42 642 78 HOH HOH . E 5 HOH A 43 643 79 HOH HOH . E 5 HOH A 44 644 80 HOH HOH . E 5 HOH A 45 645 81 HOH HOH . E 5 HOH A 46 646 82 HOH HOH . E 5 HOH A 47 647 83 HOH HOH . E 5 HOH A 48 648 84 HOH HOH . E 5 HOH A 49 649 85 HOH HOH . E 5 HOH A 50 650 86 HOH HOH . E 5 HOH A 51 651 87 HOH HOH . E 5 HOH A 52 652 90 HOH HOH . E 5 HOH A 53 653 91 HOH HOH . E 5 HOH A 54 654 92 HOH HOH . E 5 HOH A 55 655 94 HOH HOH . E 5 HOH A 56 656 97 HOH HOH . E 5 HOH A 57 657 98 HOH HOH . E 5 HOH A 58 658 99 HOH HOH . E 5 HOH A 59 659 101 HOH HOH . E 5 HOH A 60 660 104 HOH HOH . E 5 HOH A 61 661 106 HOH HOH . E 5 HOH A 62 662 108 HOH HOH . E 5 HOH A 63 663 109 HOH HOH . E 5 HOH A 64 664 112 HOH HOH . E 5 HOH A 65 665 113 HOH HOH . E 5 HOH A 66 666 114 HOH HOH . E 5 HOH A 67 667 115 HOH HOH . E 5 HOH A 68 668 117 HOH HOH . E 5 HOH A 69 669 118 HOH HOH . E 5 HOH A 70 670 120 HOH HOH . E 5 HOH A 71 671 121 HOH HOH . E 5 HOH A 72 672 122 HOH HOH . E 5 HOH A 73 673 123 HOH HOH . E 5 HOH A 74 674 124 HOH HOH . E 5 HOH A 75 675 127 HOH HOH . E 5 HOH A 76 676 128 HOH HOH . E 5 HOH A 77 677 129 HOH HOH . E 5 HOH A 78 678 130 HOH HOH . E 5 HOH A 79 679 141 HOH HOH . E 5 HOH A 80 680 147 HOH HOH . E 5 HOH A 81 681 152 HOH HOH . E 5 HOH A 82 682 154 HOH HOH . E 5 HOH A 83 683 155 HOH HOH . E 5 HOH A 84 684 156 HOH HOH . E 5 HOH A 85 685 157 HOH HOH . E 5 HOH A 86 686 158 HOH HOH . E 5 HOH A 87 687 159 HOH HOH . E 5 HOH A 88 688 161 HOH HOH . E 5 HOH A 89 689 162 HOH HOH . E 5 HOH A 90 690 163 HOH HOH . E 5 HOH A 91 691 165 HOH HOH . E 5 HOH A 92 692 166 HOH HOH . E 5 HOH A 93 693 167 HOH HOH . E 5 HOH A 94 694 171 HOH HOH . E 5 HOH A 95 695 172 HOH HOH . E 5 HOH A 96 696 173 HOH HOH . E 5 HOH A 97 697 174 HOH HOH . E 5 HOH A 98 698 176 HOH HOH . E 5 HOH A 99 699 177 HOH HOH . E 5 HOH A 100 700 180 HOH HOH . E 5 HOH A 101 701 182 HOH HOH . E 5 HOH A 102 702 183 HOH HOH . E 5 HOH A 103 703 185 HOH HOH . E 5 HOH A 104 704 186 HOH HOH . E 5 HOH A 105 705 187 HOH HOH . E 5 HOH A 106 706 189 HOH HOH . E 5 HOH A 107 707 192 HOH HOH . E 5 HOH A 108 708 193 HOH HOH . E 5 HOH A 109 709 194 HOH HOH . E 5 HOH A 110 710 195 HOH HOH . E 5 HOH A 111 711 198 HOH HOH . E 5 HOH A 112 712 200 HOH HOH . E 5 HOH A 113 713 201 HOH HOH . E 5 HOH A 114 714 202 HOH HOH . E 5 HOH A 115 715 203 HOH HOH . E 5 HOH A 116 716 205 HOH HOH . E 5 HOH A 117 717 206 HOH HOH . E 5 HOH A 118 718 207 HOH HOH . E 5 HOH A 119 719 208 HOH HOH . E 5 HOH A 120 720 212 HOH HOH . E 5 HOH A 121 721 214 HOH HOH . E 5 HOH A 122 722 215 HOH HOH . E 5 HOH A 123 723 216 HOH HOH . E 5 HOH A 124 724 217 HOH HOH . E 5 HOH A 125 725 218 HOH HOH . E 5 HOH A 126 726 221 HOH HOH . E 5 HOH A 127 727 224 HOH HOH . E 5 HOH A 128 728 227 HOH HOH . E 5 HOH A 129 729 228 HOH HOH . E 5 HOH A 130 730 229 HOH HOH . E 5 HOH A 131 731 230 HOH HOH . E 5 HOH A 132 732 235 HOH HOH . E 5 HOH A 133 733 236 HOH HOH . E 5 HOH A 134 734 237 HOH HOH . E 5 HOH A 135 735 238 HOH HOH . E 5 HOH A 136 736 239 HOH HOH . E 5 HOH A 137 737 240 HOH HOH . E 5 HOH A 138 738 242 HOH HOH . E 5 HOH A 139 739 245 HOH HOH . E 5 HOH A 140 740 246 HOH HOH . E 5 HOH A 141 741 249 HOH HOH . E 5 HOH A 142 742 251 HOH HOH . E 5 HOH A 143 743 253 HOH HOH . E 5 HOH A 144 744 254 HOH HOH . E 5 HOH A 145 745 255 HOH HOH . E 5 HOH A 146 746 261 HOH HOH . E 5 HOH A 147 747 266 HOH HOH . E 5 HOH A 148 748 267 HOH HOH . E 5 HOH A 149 749 268 HOH HOH . E 5 HOH A 150 750 269 HOH HOH . E 5 HOH A 151 751 270 HOH HOH . E 5 HOH A 152 752 271 HOH HOH . E 5 HOH A 153 753 276 HOH HOH . E 5 HOH A 154 754 277 HOH HOH . E 5 HOH A 155 755 278 HOH HOH . E 5 HOH A 156 756 279 HOH HOH . E 5 HOH A 157 757 280 HOH HOH . E 5 HOH A 158 758 281 HOH HOH . E 5 HOH A 159 759 282 HOH HOH . E 5 HOH A 160 760 284 HOH HOH . E 5 HOH A 161 761 285 HOH HOH . E 5 HOH A 162 762 286 HOH HOH . E 5 HOH A 163 763 287 HOH HOH . E 5 HOH A 164 764 288 HOH HOH . E 5 HOH A 165 765 289 HOH HOH . E 5 HOH A 166 766 290 HOH HOH . E 5 HOH A 167 767 291 HOH HOH . E 5 HOH A 168 768 292 HOH HOH . E 5 HOH A 169 769 293 HOH HOH . E 5 HOH A 170 770 294 HOH HOH . E 5 HOH A 171 771 295 HOH HOH . E 5 HOH A 172 772 296 HOH HOH . E 5 HOH A 173 773 297 HOH HOH . E 5 HOH A 174 774 298 HOH HOH . E 5 HOH A 175 775 299 HOH HOH . E 5 HOH A 176 776 300 HOH HOH . E 5 HOH A 177 777 301 HOH HOH . E 5 HOH A 178 778 302 HOH HOH . E 5 HOH A 179 779 303 HOH HOH . E 5 HOH A 180 780 304 HOH HOH . E 5 HOH A 181 781 306 HOH HOH . E 5 HOH A 182 782 307 HOH HOH . E 5 HOH A 183 783 308 HOH HOH . E 5 HOH A 184 784 309 HOH HOH . E 5 HOH A 185 785 310 HOH HOH . E 5 HOH A 186 786 312 HOH HOH . E 5 HOH A 187 787 314 HOH HOH . E 5 HOH A 188 788 315 HOH HOH . E 5 HOH A 189 789 316 HOH HOH . E 5 HOH A 190 790 317 HOH HOH . E 5 HOH A 191 791 318 HOH HOH . E 5 HOH A 192 792 319 HOH HOH . E 5 HOH A 193 793 320 HOH HOH . E 5 HOH A 194 794 323 HOH HOH . E 5 HOH A 195 795 324 HOH HOH . E 5 HOH A 196 796 325 HOH HOH . E 5 HOH A 197 797 326 HOH HOH . E 5 HOH A 198 798 328 HOH HOH . E 5 HOH A 199 799 329 HOH HOH . E 5 HOH A 200 800 330 HOH HOH . E 5 HOH A 201 801 332 HOH HOH . E 5 HOH A 202 802 333 HOH HOH . E 5 HOH A 203 803 334 HOH HOH . E 5 HOH A 204 804 335 HOH HOH . E 5 HOH A 205 805 336 HOH HOH . E 5 HOH A 206 806 337 HOH HOH . E 5 HOH A 207 807 338 HOH HOH . E 5 HOH A 208 808 339 HOH HOH . E 5 HOH A 209 809 340 HOH HOH . E 5 HOH A 210 810 341 HOH HOH . F 5 HOH B 1 33 33 HOH HOH . F 5 HOH B 2 45 45 HOH HOH . F 5 HOH B 3 179 179 HOH HOH . F 5 HOH B 4 226 226 HOH HOH . F 5 HOH B 5 264 264 HOH HOH . F 5 HOH B 6 311 311 HOH HOH . F 5 HOH B 7 321 321 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1L 7CP . . . D 4 34.067 49.124 15.458 1 15.92 ? C1L 7CP 501 A 1 HETATM 2 C C1J 7CP . . . D 4 34.925 49.446 16.729 1 14.12 ? C1J 7CP 501 A 1 HETATM 3 N N1W 7CP . . . D 4 35.907 50.456 16.374 1 21.55 ? N1W 7CP 501 A 1 HETATM 4 C C1A 7CP . . . D 4 36.805 50.964 17.43 1 15.05 ? C1A 7CP 501 A 1 HETATM 5 C C1K 7CP . . . D 4 35.032 51.664 16.127 1 23.59 ? C1K 7CP 501 A 1 HETATM 6 C C1M 7CP . . . D 4 34.014 51.531 14.946 1 19.54 ? C1M 7CP 501 A 1 HETATM 7 C C1Y 7CP . . . D 4 33.145 50.311 15.09 1 16.92 ? C1Y 7CP 501 A 1 HETATM 8 N N1N 7CP . . . D 4 32.312 50.459 16.299 1 16.83 ? N1N 7CP 501 A 1 HETATM 9 C C1O 7CP . . . D 4 31.308 49.556 16.549 1 23.98 ? C1O 7CP 501 A 1 HETATM 10 O O1D 7CP . . . D 4 30.652 49.726 17.566 1 19.02 ? O1D 7CP 501 A 1 HETATM 11 C C1R 7CP . . . D 4 30.811 48.737 15.532 1 15.12 ? C1R 7CP 501 A 1 HETATM 12 N N1X 7CP . . . D 4 29.873 47.788 15.54 1 15.28 ? N1X 7CP 501 A 1 HETATM 13 C C1B 7CP . . . D 4 29.219 47.29 16.774 1 19.44 ? C1B 7CP 501 A 1 HETATM 14 C C1U 7CP . . . D 4 29.653 47.324 14.292 1 10.57 ? C1U 7CP 501 A 1 HETATM 15 C C1Q 7CP . . . D 4 28.815 46.343 13.76 1 20.25 ? C1Q 7CP 501 A 1 HETATM 16 CL CL1F 7CP . . . D 4 27.8 45.364 14.761 1 35.54 ? CL1F 7CP 501 A 1 HETATM 17 C C1P 7CP . . . D 4 28.812 46.098 12.402 1 20.73 ? C1P 7CP 501 A 1 HETATM 18 CL CL1E 7CP . . . D 4 27.773 44.888 11.769 1 31.27 ? CL1E 7CP 501 A 1 HETATM 19 C C1H 7CP . . . D 4 29.621 46.825 11.54 1 11.67 ? C1H 7CP 501 A 1 HETATM 20 C C1I 7CP . . . D 4 30.462 47.788 12.061 1 12.14 ? C1I 7CP 501 A 1 HETATM 21 C C1T 7CP . . . D 4 30.495 48.031 13.425 1 11.94 ? C1T 7CP 501 A 1 HETATM 22 C C1S 7CP . . . D 4 31.227 48.943 14.194 1 10.37 ? C1S 7CP 501 A 1 HETATM 23 C C1V 7CP . . . D 4 32.291 50 13.835 1 13.92 ? C1V 7CP 501 A 1 HETATM 24 C C1G 7CP . . . D 4 31.647 51.179 13.274 1 21.58 ? C1G 7CP 501 A 1 HETATM 25 N N1C 7CP . . . D 4 31.063 52.056 12.871 1 24.6 ? N1C 7CP 501 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #