data_3CY2
#
_model_server_result.job_id            MXP2URkwkoAWb6DlG5O21Q 
_model_server_result.datetime_utc      '2024-11-23 00:35:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3cy2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    3CY2 
#
_exptl.entry_id    3CY2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              328.796 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "(4R)-7-chloro-9-methyl-1-oxo-1,2,4,9-tetrahydrospiro[beta-carboline-3,4'-piperidine]-4-carbonitrile" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3CY2 
_cell.length_a            98.668 
_cell.length_b            98.668 
_cell.length_c            81.129 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CY2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C17 H17 Cl N4 O' 
_chem_comp.formula_weight    328.796 
_chem_comp.id                MB9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "(4R)-7-chloro-9-methyl-1-oxo-1,2,4,9-tetrahydrospiro[beta-carboline-3,4'-piperidine]-4-carbonitrile" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1K C1I MB9 sing 227 n n 
C1K C1W MB9 sing 228 n n 
C1I N1M MB9 sing 229 n n 
N1M C1J MB9 sing 230 n n 
C1J C1L MB9 sing 231 n n 
C1L C1W MB9 sing 232 n n 
C1W N1N MB9 sing 233 n n 
C1W C1U MB9 sing 234 n n 
N1N C1O MB9 sing 235 n n 
C1O O1C MB9 doub 236 n n 
C1O C1Q MB9 sing 237 n n 
C1Q N1V MB9 sing 238 n y 
C1Q C1R MB9 doub 239 n y 
N1V C1A MB9 sing 240 n n 
N1V C1T MB9 sing 241 n y 
C1T C1H MB9 doub 242 n y 
C1T C1S MB9 sing 243 n y 
C1H C1P MB9 sing 244 n y 
C1P CL1D MB9 sing 245 n n 
C1P C1F MB9 doub 246 n y 
C1F C1G MB9 sing 247 n y 
C1G C1S MB9 doub 248 n y 
C1S C1R MB9 sing 249 n y 
C1R C1U MB9 sing 250 n n 
C1U C1E MB9 sing 251 n n 
C1E N1B MB9 trip 252 n n 
C1K H1K MB9 sing 253 n n 
C1K H1KA MB9 sing 254 n n 
C1I H1I MB9 sing 255 n n 
C1I H1IA MB9 sing 256 n n 
N1M HN1M MB9 sing 257 n n 
C1J H1J MB9 sing 258 n n 
C1J H1JA MB9 sing 259 n n 
C1L H1L MB9 sing 260 n n 
C1L H1LA MB9 sing 261 n n 
N1N HN1N MB9 sing 262 n n 
C1A H1A MB9 sing 263 n n 
C1A H1AA MB9 sing 264 n n 
C1A H1AB MB9 sing 265 n n 
C1H H1H MB9 sing 266 n n 
C1F H1F MB9 sing 267 n n 
C1G H1G MB9 sing 268 n n 
C1U H1U MB9 sing 269 n n 
#
_atom_sites.entry_id                     3CY2 
_atom_sites.fract_transf_matrix[1][1]    0.010135 
_atom_sites.fract_transf_matrix[1][2]    0.005851 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011703 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012326 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CL A 1 401 401 CL CL . 
D 4 MB9 A 1 501 501 MB9 MB9 . 
E 5 EDO A 1 551 551 EDO EDO . 
F 6 HOH A 1 601 601 HOH HOH . 
F 6 HOH A 2 602 2 HOH HOH . 
F 6 HOH A 3 603 3 HOH HOH . 
F 6 HOH A 4 604 4 HOH HOH . 
F 6 HOH A 5 605 5 HOH HOH . 
F 6 HOH A 6 606 6 HOH HOH . 
F 6 HOH A 7 607 7 HOH HOH . 
F 6 HOH A 8 608 8 HOH HOH . 
F 6 HOH A 9 609 9 HOH HOH . 
F 6 HOH A 10 610 10 HOH HOH . 
F 6 HOH A 11 611 11 HOH HOH . 
F 6 HOH A 12 612 12 HOH HOH . 
F 6 HOH A 13 613 13 HOH HOH . 
F 6 HOH A 14 614 14 HOH HOH . 
F 6 HOH A 15 615 15 HOH HOH . 
F 6 HOH A 16 616 16 HOH HOH . 
F 6 HOH A 17 617 17 HOH HOH . 
F 6 HOH A 18 618 18 HOH HOH . 
F 6 HOH A 19 619 19 HOH HOH . 
F 6 HOH A 20 620 20 HOH HOH . 
F 6 HOH A 21 621 22 HOH HOH . 
F 6 HOH A 22 622 23 HOH HOH . 
F 6 HOH A 23 623 24 HOH HOH . 
F 6 HOH A 24 624 25 HOH HOH . 
F 6 HOH A 25 625 26 HOH HOH . 
F 6 HOH A 26 626 27 HOH HOH . 
F 6 HOH A 27 627 28 HOH HOH . 
F 6 HOH A 28 628 29 HOH HOH . 
F 6 HOH A 29 629 30 HOH HOH . 
F 6 HOH A 30 630 31 HOH HOH . 
F 6 HOH A 31 631 32 HOH HOH . 
F 6 HOH A 32 632 33 HOH HOH . 
F 6 HOH A 33 633 34 HOH HOH . 
F 6 HOH A 34 634 36 HOH HOH . 
F 6 HOH A 35 635 37 HOH HOH . 
F 6 HOH A 36 636 38 HOH HOH . 
F 6 HOH A 37 637 39 HOH HOH . 
F 6 HOH A 38 638 40 HOH HOH . 
F 6 HOH A 39 639 41 HOH HOH . 
F 6 HOH A 40 640 42 HOH HOH . 
F 6 HOH A 41 641 43 HOH HOH . 
F 6 HOH A 42 642 44 HOH HOH . 
F 6 HOH A 43 643 45 HOH HOH . 
F 6 HOH A 44 644 46 HOH HOH . 
F 6 HOH A 45 645 48 HOH HOH . 
F 6 HOH A 46 646 49 HOH HOH . 
F 6 HOH A 47 647 50 HOH HOH . 
F 6 HOH A 48 648 51 HOH HOH . 
F 6 HOH A 49 649 52 HOH HOH . 
F 6 HOH A 50 650 53 HOH HOH . 
F 6 HOH A 51 651 54 HOH HOH . 
F 6 HOH A 52 652 55 HOH HOH . 
F 6 HOH A 53 653 56 HOH HOH . 
F 6 HOH A 54 654 57 HOH HOH . 
F 6 HOH A 55 655 58 HOH HOH . 
F 6 HOH A 56 656 59 HOH HOH . 
F 6 HOH A 57 657 60 HOH HOH . 
F 6 HOH A 58 658 61 HOH HOH . 
F 6 HOH A 59 659 62 HOH HOH . 
F 6 HOH A 60 660 63 HOH HOH . 
F 6 HOH A 61 661 64 HOH HOH . 
F 6 HOH A 62 662 65 HOH HOH . 
F 6 HOH A 63 663 66 HOH HOH . 
F 6 HOH A 64 664 67 HOH HOH . 
F 6 HOH A 65 665 68 HOH HOH . 
F 6 HOH A 66 666 69 HOH HOH . 
F 6 HOH A 67 667 70 HOH HOH . 
F 6 HOH A 68 668 72 HOH HOH . 
F 6 HOH A 69 669 73 HOH HOH . 
F 6 HOH A 70 670 74 HOH HOH . 
F 6 HOH A 71 671 75 HOH HOH . 
F 6 HOH A 72 672 76 HOH HOH . 
F 6 HOH A 73 673 77 HOH HOH . 
F 6 HOH A 74 674 78 HOH HOH . 
F 6 HOH A 75 675 79 HOH HOH . 
F 6 HOH A 76 676 80 HOH HOH . 
F 6 HOH A 77 677 81 HOH HOH . 
F 6 HOH A 78 678 82 HOH HOH . 
F 6 HOH A 79 679 83 HOH HOH . 
F 6 HOH A 80 680 84 HOH HOH . 
F 6 HOH A 81 681 85 HOH HOH . 
F 6 HOH A 82 682 87 HOH HOH . 
F 6 HOH A 83 683 88 HOH HOH . 
F 6 HOH A 84 684 89 HOH HOH . 
F 6 HOH A 85 685 90 HOH HOH . 
F 6 HOH A 86 686 91 HOH HOH . 
F 6 HOH A 87 687 93 HOH HOH . 
F 6 HOH A 88 688 94 HOH HOH . 
F 6 HOH A 89 689 95 HOH HOH . 
F 6 HOH A 90 690 96 HOH HOH . 
F 6 HOH A 91 691 97 HOH HOH . 
F 6 HOH A 92 692 98 HOH HOH . 
F 6 HOH A 93 693 99 HOH HOH . 
F 6 HOH A 94 694 100 HOH HOH . 
F 6 HOH A 95 695 102 HOH HOH . 
F 6 HOH A 96 696 103 HOH HOH . 
F 6 HOH A 97 697 104 HOH HOH . 
F 6 HOH A 98 698 105 HOH HOH . 
F 6 HOH A 99 699 107 HOH HOH . 
F 6 HOH A 100 700 108 HOH HOH . 
F 6 HOH A 101 701 109 HOH HOH . 
F 6 HOH A 102 702 110 HOH HOH . 
F 6 HOH A 103 703 111 HOH HOH . 
F 6 HOH A 104 704 112 HOH HOH . 
F 6 HOH A 105 705 113 HOH HOH . 
F 6 HOH A 106 706 114 HOH HOH . 
F 6 HOH A 107 707 115 HOH HOH . 
F 6 HOH A 108 708 116 HOH HOH . 
F 6 HOH A 109 709 117 HOH HOH . 
F 6 HOH A 110 710 118 HOH HOH . 
F 6 HOH A 111 711 119 HOH HOH . 
F 6 HOH A 112 712 120 HOH HOH . 
F 6 HOH A 113 713 121 HOH HOH . 
F 6 HOH A 114 714 122 HOH HOH . 
F 6 HOH A 115 715 123 HOH HOH . 
F 6 HOH A 116 716 126 HOH HOH . 
F 6 HOH A 117 717 127 HOH HOH . 
F 6 HOH A 118 718 128 HOH HOH . 
F 6 HOH A 119 719 129 HOH HOH . 
F 6 HOH A 120 720 130 HOH HOH . 
F 6 HOH A 121 721 131 HOH HOH . 
F 6 HOH A 122 722 132 HOH HOH . 
F 6 HOH A 123 723 133 HOH HOH . 
F 6 HOH A 124 724 138 HOH HOH . 
F 6 HOH A 125 725 139 HOH HOH . 
F 6 HOH A 126 726 140 HOH HOH . 
F 6 HOH A 127 727 143 HOH HOH . 
F 6 HOH A 128 728 144 HOH HOH . 
F 6 HOH A 129 729 145 HOH HOH . 
F 6 HOH A 130 730 146 HOH HOH . 
F 6 HOH A 131 731 147 HOH HOH . 
F 6 HOH A 132 732 148 HOH HOH . 
F 6 HOH A 133 733 149 HOH HOH . 
F 6 HOH A 134 734 150 HOH HOH . 
F 6 HOH A 135 735 151 HOH HOH . 
F 6 HOH A 136 736 152 HOH HOH . 
F 6 HOH A 137 737 153 HOH HOH . 
F 6 HOH A 138 738 154 HOH HOH . 
F 6 HOH A 139 739 155 HOH HOH . 
F 6 HOH A 140 740 156 HOH HOH . 
F 6 HOH A 141 741 157 HOH HOH . 
F 6 HOH A 142 742 158 HOH HOH . 
F 6 HOH A 143 743 160 HOH HOH . 
F 6 HOH A 144 744 161 HOH HOH . 
F 6 HOH A 145 745 162 HOH HOH . 
F 6 HOH A 146 746 163 HOH HOH . 
F 6 HOH A 147 747 164 HOH HOH . 
F 6 HOH A 148 748 165 HOH HOH . 
F 6 HOH A 149 749 166 HOH HOH . 
F 6 HOH A 150 750 167 HOH HOH . 
F 6 HOH A 151 751 168 HOH HOH . 
F 6 HOH A 152 752 169 HOH HOH . 
F 6 HOH A 153 753 170 HOH HOH . 
F 6 HOH A 154 754 171 HOH HOH . 
F 6 HOH A 155 755 172 HOH HOH . 
F 6 HOH A 156 756 173 HOH HOH . 
F 6 HOH A 157 757 174 HOH HOH . 
F 6 HOH A 158 758 175 HOH HOH . 
F 6 HOH A 159 759 176 HOH HOH . 
F 6 HOH A 160 760 178 HOH HOH . 
F 6 HOH A 161 761 181 HOH HOH . 
F 6 HOH A 162 762 183 HOH HOH . 
F 6 HOH A 163 763 184 HOH HOH . 
F 6 HOH A 164 764 186 HOH HOH . 
F 6 HOH A 165 765 187 HOH HOH . 
F 6 HOH A 166 766 188 HOH HOH . 
F 6 HOH A 167 767 189 HOH HOH . 
F 6 HOH A 168 768 190 HOH HOH . 
F 6 HOH A 169 769 191 HOH HOH . 
F 6 HOH A 170 770 193 HOH HOH . 
F 6 HOH A 171 771 196 HOH HOH . 
F 6 HOH A 172 772 197 HOH HOH . 
F 6 HOH A 173 773 198 HOH HOH . 
F 6 HOH A 174 774 199 HOH HOH . 
F 6 HOH A 175 775 200 HOH HOH . 
F 6 HOH A 176 776 201 HOH HOH . 
F 6 HOH A 177 777 202 HOH HOH . 
F 6 HOH A 178 778 203 HOH HOH . 
F 6 HOH A 179 779 204 HOH HOH . 
F 6 HOH A 180 780 205 HOH HOH . 
F 6 HOH A 181 781 206 HOH HOH . 
F 6 HOH A 182 782 207 HOH HOH . 
F 6 HOH A 183 783 208 HOH HOH . 
F 6 HOH A 184 784 209 HOH HOH . 
F 6 HOH A 185 785 210 HOH HOH . 
F 6 HOH A 186 786 211 HOH HOH . 
F 6 HOH A 187 787 212 HOH HOH . 
F 6 HOH A 188 788 213 HOH HOH . 
F 6 HOH A 189 789 214 HOH HOH . 
F 6 HOH A 190 790 215 HOH HOH . 
F 6 HOH A 191 791 216 HOH HOH . 
F 6 HOH A 192 792 217 HOH HOH . 
F 6 HOH A 193 793 218 HOH HOH . 
F 6 HOH A 194 794 219 HOH HOH . 
F 6 HOH A 195 795 220 HOH HOH . 
F 6 HOH A 196 796 222 HOH HOH . 
F 6 HOH A 197 797 223 HOH HOH . 
F 6 HOH A 198 798 224 HOH HOH . 
F 6 HOH A 199 799 225 HOH HOH . 
F 6 HOH A 200 800 226 HOH HOH . 
G 6 HOH B 1 92 92 HOH HOH . 
G 6 HOH B 2 106 106 HOH HOH . 
G 6 HOH B 3 124 124 HOH HOH . 
G 6 HOH B 4 137 137 HOH HOH . 
G 6 HOH B 5 141 141 HOH HOH . 
G 6 HOH B 6 142 142 HOH HOH . 
G 6 HOH B 7 221 221 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1K MB9 . . . D 4 -15.253 33.874 -0.924 1 26.78 ? C1K MB9 501 A 1 
HETATM 2 C C1I MB9 . . . D 4 -14.2 33.623 -2.004 1 29.08 ? C1I MB9 501 A 1 
HETATM 3 N N1M MB9 . . . D 4 -13.423 34.848 -2.374 1 27.58 ? N1M MB9 501 A 1 
HETATM 4 C C1J MB9 . . . D 4 -14.259 36.025 -2.653 1 23.03 ? C1J MB9 501 A 1 
HETATM 5 C C1L MB9 . . . D 4 -15.208 36.314 -1.496 1 30.66 ? C1L MB9 501 A 1 
HETATM 6 C C1W MB9 . . . D 4 -16.093 35.095 -1.161 1 32.33 ? C1W MB9 501 A 1 
HETATM 7 N N1N MB9 . . . D 4 -16.892 34.857 -2.386 1 33.8 ? N1N MB9 501 A 1 
HETATM 8 C C1O MB9 . . . D 4 -17.955 35.686 -2.686 1 33.26 ? C1O MB9 501 A 1 
HETATM 9 O O1C MB9 . . . D 4 -18.544 35.466 -3.741 1 35.49 ? O1C MB9 501 A 1 
HETATM 10 C C1Q MB9 . . . D 4 -18.506 36.504 -1.705 1 30.25 ? C1Q MB9 501 A 1 
HETATM 11 N N1V MB9 . . . D 4 -19.487 37.411 -1.726 1 24.69 ? N1V MB9 501 A 1 
HETATM 12 C C1A MB9 . . . D 4 -20.197 37.845 -2.946 1 32.27 ? C1A MB9 501 A 1 
HETATM 13 C C1T MB9 . . . D 4 -19.715 37.917 -0.511 1 27.04 ? C1T MB9 501 A 1 
HETATM 14 C C1H MB9 . . . D 4 -20.591 38.905 -0.052 1 29 ? C1H MB9 501 A 1 
HETATM 15 C C1P MB9 . . . D 4 -20.593 39.202 1.307 1 33.18 ? C1P MB9 501 A 1 
HETATM 16 CL CL1D MB9 . . . D 4 -21.702 40.405 1.877 1 48.92 ? CL1D MB9 501 A 1 
HETATM 17 C C1F MB9 . . . D 4 -19.736 38.558 2.207 1 25.79 ? C1F MB9 501 A 1 
HETATM 18 C C1G MB9 . . . D 4 -18.834 37.614 1.736 1 27.99 ? C1G MB9 501 A 1 
HETATM 19 C C1S MB9 . . . D 4 -18.826 37.298 0.382 1 27.39 ? C1S MB9 501 A 1 
HETATM 20 C C1R MB9 . . . D 4 -18.06 36.402 -0.37 1 28.62 ? C1R MB9 501 A 1 
HETATM 21 C C1U MB9 . . . D 4 -16.952 35.429 0.047 1 28.37 ? C1U MB9 501 A 1 
HETATM 22 C C1E MB9 . . . D 4 -17.561 34.221 0.631 1 33.09 ? C1E MB9 501 A 1 
HETATM 23 N N1B MB9 . . . D 4 -18.056 33.289 1.038 1 32.26 ? N1B MB9 501 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           23 
#