data_3CY3
#
_model_server_result.job_id            dxnDscUnH1-Wm8S7LjhJ-g 
_model_server_result.datetime_utc      '2024-12-23 07:53:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3cy3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    3CY3 
#
_exptl.entry_id    3CY3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3CY3 
_cell.length_a            98.239 
_cell.length_b            98.239 
_cell.length_c            80.723 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CY3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 261 A SER 260 1_555 A N SEP 262 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale2 A C SEP 262 A SEP 261 1_555 A N GLU 263 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     3CY3 
_atom_sites.fract_transf_matrix[1][1]    0.010179 
_atom_sites.fract_transf_matrix[1][2]    0.005877 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011754 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012388 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EDO A 1 401 401 EDO EDO . 
D 4 JN5 A 1 501 501 JN5 JN5 . 
E 5 HOH A 1 502 1 HOH HOH . 
E 5 HOH A 2 503 2 HOH HOH . 
E 5 HOH A 3 504 3 HOH HOH . 
E 5 HOH A 4 505 4 HOH HOH . 
E 5 HOH A 5 506 5 HOH HOH . 
E 5 HOH A 6 507 6 HOH HOH . 
E 5 HOH A 7 508 7 HOH HOH . 
E 5 HOH A 8 509 8 HOH HOH . 
E 5 HOH A 9 510 9 HOH HOH . 
E 5 HOH A 10 511 10 HOH HOH . 
E 5 HOH A 11 512 11 HOH HOH . 
E 5 HOH A 12 513 12 HOH HOH . 
E 5 HOH A 13 514 13 HOH HOH . 
E 5 HOH A 14 515 14 HOH HOH . 
E 5 HOH A 15 516 15 HOH HOH . 
E 5 HOH A 16 517 16 HOH HOH . 
E 5 HOH A 17 518 17 HOH HOH . 
E 5 HOH A 18 519 18 HOH HOH . 
E 5 HOH A 19 520 19 HOH HOH . 
E 5 HOH A 20 521 20 HOH HOH . 
E 5 HOH A 21 522 23 HOH HOH . 
E 5 HOH A 22 523 24 HOH HOH . 
E 5 HOH A 23 524 25 HOH HOH . 
E 5 HOH A 24 525 26 HOH HOH . 
E 5 HOH A 25 526 27 HOH HOH . 
E 5 HOH A 26 527 28 HOH HOH . 
E 5 HOH A 27 528 29 HOH HOH . 
E 5 HOH A 28 529 30 HOH HOH . 
E 5 HOH A 29 530 31 HOH HOH . 
E 5 HOH A 30 531 32 HOH HOH . 
E 5 HOH A 31 532 33 HOH HOH . 
E 5 HOH A 32 533 34 HOH HOH . 
E 5 HOH A 33 534 35 HOH HOH . 
E 5 HOH A 34 535 36 HOH HOH . 
E 5 HOH A 35 536 37 HOH HOH . 
E 5 HOH A 36 537 38 HOH HOH . 
E 5 HOH A 37 538 39 HOH HOH . 
E 5 HOH A 38 539 40 HOH HOH . 
E 5 HOH A 39 540 41 HOH HOH . 
E 5 HOH A 40 541 42 HOH HOH . 
E 5 HOH A 41 542 44 HOH HOH . 
E 5 HOH A 42 543 45 HOH HOH . 
E 5 HOH A 43 544 46 HOH HOH . 
E 5 HOH A 44 545 47 HOH HOH . 
E 5 HOH A 45 546 48 HOH HOH . 
E 5 HOH A 46 547 49 HOH HOH . 
E 5 HOH A 47 548 50 HOH HOH . 
E 5 HOH A 48 549 51 HOH HOH . 
E 5 HOH A 49 550 52 HOH HOH . 
E 5 HOH A 50 551 53 HOH HOH . 
E 5 HOH A 51 552 54 HOH HOH . 
E 5 HOH A 52 553 55 HOH HOH . 
E 5 HOH A 53 554 56 HOH HOH . 
E 5 HOH A 54 555 57 HOH HOH . 
E 5 HOH A 55 556 58 HOH HOH . 
E 5 HOH A 56 557 59 HOH HOH . 
E 5 HOH A 57 558 60 HOH HOH . 
E 5 HOH A 58 559 61 HOH HOH . 
E 5 HOH A 59 560 62 HOH HOH . 
E 5 HOH A 60 561 63 HOH HOH . 
E 5 HOH A 61 562 64 HOH HOH . 
E 5 HOH A 62 563 65 HOH HOH . 
E 5 HOH A 63 564 66 HOH HOH . 
E 5 HOH A 64 565 67 HOH HOH . 
E 5 HOH A 65 566 68 HOH HOH . 
E 5 HOH A 66 567 69 HOH HOH . 
E 5 HOH A 67 568 70 HOH HOH . 
E 5 HOH A 68 569 71 HOH HOH . 
E 5 HOH A 69 570 72 HOH HOH . 
E 5 HOH A 70 571 73 HOH HOH . 
E 5 HOH A 71 572 74 HOH HOH . 
E 5 HOH A 72 573 75 HOH HOH . 
E 5 HOH A 73 574 76 HOH HOH . 
E 5 HOH A 74 575 77 HOH HOH . 
E 5 HOH A 75 576 79 HOH HOH . 
E 5 HOH A 76 577 80 HOH HOH . 
E 5 HOH A 77 578 81 HOH HOH . 
E 5 HOH A 78 579 82 HOH HOH . 
E 5 HOH A 79 580 83 HOH HOH . 
E 5 HOH A 80 581 84 HOH HOH . 
E 5 HOH A 81 582 85 HOH HOH . 
E 5 HOH A 82 583 86 HOH HOH . 
E 5 HOH A 83 584 87 HOH HOH . 
E 5 HOH A 84 585 88 HOH HOH . 
E 5 HOH A 85 586 89 HOH HOH . 
E 5 HOH A 86 587 90 HOH HOH . 
E 5 HOH A 87 588 91 HOH HOH . 
E 5 HOH A 88 589 92 HOH HOH . 
E 5 HOH A 89 590 93 HOH HOH . 
E 5 HOH A 90 591 94 HOH HOH . 
E 5 HOH A 91 592 95 HOH HOH . 
E 5 HOH A 92 593 96 HOH HOH . 
E 5 HOH A 93 594 97 HOH HOH . 
E 5 HOH A 94 595 98 HOH HOH . 
E 5 HOH A 95 596 99 HOH HOH . 
E 5 HOH A 96 597 100 HOH HOH . 
E 5 HOH A 97 598 101 HOH HOH . 
E 5 HOH A 98 599 102 HOH HOH . 
E 5 HOH A 99 600 103 HOH HOH . 
E 5 HOH A 100 601 104 HOH HOH . 
E 5 HOH A 101 602 105 HOH HOH . 
E 5 HOH A 102 603 106 HOH HOH . 
E 5 HOH A 103 604 107 HOH HOH . 
E 5 HOH A 104 605 108 HOH HOH . 
E 5 HOH A 105 606 109 HOH HOH . 
E 5 HOH A 106 607 110 HOH HOH . 
E 5 HOH A 107 608 111 HOH HOH . 
E 5 HOH A 108 609 112 HOH HOH . 
E 5 HOH A 109 610 113 HOH HOH . 
E 5 HOH A 110 611 114 HOH HOH . 
E 5 HOH A 111 612 115 HOH HOH . 
E 5 HOH A 112 613 116 HOH HOH . 
E 5 HOH A 113 614 117 HOH HOH . 
E 5 HOH A 114 615 118 HOH HOH . 
E 5 HOH A 115 616 119 HOH HOH . 
E 5 HOH A 116 617 120 HOH HOH . 
E 5 HOH A 117 618 121 HOH HOH . 
E 5 HOH A 118 619 122 HOH HOH . 
E 5 HOH A 119 620 123 HOH HOH . 
E 5 HOH A 120 621 124 HOH HOH . 
E 5 HOH A 121 622 125 HOH HOH . 
E 5 HOH A 122 623 126 HOH HOH . 
E 5 HOH A 123 624 127 HOH HOH . 
E 5 HOH A 124 625 128 HOH HOH . 
E 5 HOH A 125 626 129 HOH HOH . 
E 5 HOH A 126 627 130 HOH HOH . 
E 5 HOH A 127 628 131 HOH HOH . 
E 5 HOH A 128 629 132 HOH HOH . 
E 5 HOH A 129 630 133 HOH HOH . 
E 5 HOH A 130 631 134 HOH HOH . 
E 5 HOH A 131 632 135 HOH HOH . 
E 5 HOH A 132 633 136 HOH HOH . 
E 5 HOH A 133 634 137 HOH HOH . 
E 5 HOH A 134 635 138 HOH HOH . 
E 5 HOH A 135 636 142 HOH HOH . 
E 5 HOH A 136 637 143 HOH HOH . 
E 5 HOH A 137 638 144 HOH HOH . 
E 5 HOH A 138 639 145 HOH HOH . 
E 5 HOH A 139 640 146 HOH HOH . 
E 5 HOH A 140 641 147 HOH HOH . 
E 5 HOH A 141 642 148 HOH HOH . 
E 5 HOH A 142 643 149 HOH HOH . 
E 5 HOH A 143 644 150 HOH HOH . 
E 5 HOH A 144 645 151 HOH HOH . 
E 5 HOH A 145 646 153 HOH HOH . 
E 5 HOH A 146 647 154 HOH HOH . 
E 5 HOH A 147 648 155 HOH HOH . 
E 5 HOH A 148 649 156 HOH HOH . 
E 5 HOH A 149 650 157 HOH HOH . 
E 5 HOH A 150 651 158 HOH HOH . 
E 5 HOH A 151 652 159 HOH HOH . 
E 5 HOH A 152 653 160 HOH HOH . 
E 5 HOH A 153 654 161 HOH HOH . 
E 5 HOH A 154 655 162 HOH HOH . 
E 5 HOH A 155 656 163 HOH HOH . 
E 5 HOH A 156 657 164 HOH HOH . 
E 5 HOH A 157 658 165 HOH HOH . 
E 5 HOH A 158 659 166 HOH HOH . 
E 5 HOH A 159 660 167 HOH HOH . 
E 5 HOH A 160 661 168 HOH HOH . 
E 5 HOH A 161 662 169 HOH HOH . 
E 5 HOH A 162 663 170 HOH HOH . 
E 5 HOH A 163 664 171 HOH HOH . 
E 5 HOH A 164 665 172 HOH HOH . 
E 5 HOH A 165 666 174 HOH HOH . 
E 5 HOH A 166 667 175 HOH HOH . 
E 5 HOH A 167 668 176 HOH HOH . 
E 5 HOH A 168 669 177 HOH HOH . 
E 5 HOH A 169 670 178 HOH HOH . 
E 5 HOH A 170 671 179 HOH HOH . 
E 5 HOH A 171 672 180 HOH HOH . 
E 5 HOH A 172 673 181 HOH HOH . 
E 5 HOH A 173 674 182 HOH HOH . 
E 5 HOH A 174 675 183 HOH HOH . 
E 5 HOH A 175 676 184 HOH HOH . 
E 5 HOH A 176 677 185 HOH HOH . 
E 5 HOH A 177 678 188 HOH HOH . 
E 5 HOH A 178 679 189 HOH HOH . 
E 5 HOH A 179 680 191 HOH HOH . 
E 5 HOH A 180 681 194 HOH HOH . 
E 5 HOH A 181 682 195 HOH HOH . 
E 5 HOH A 182 683 196 HOH HOH . 
E 5 HOH A 183 684 197 HOH HOH . 
E 5 HOH A 184 685 198 HOH HOH . 
E 5 HOH A 185 686 199 HOH HOH . 
E 5 HOH A 186 687 200 HOH HOH . 
E 5 HOH A 187 688 203 HOH HOH . 
E 5 HOH A 188 689 204 HOH HOH . 
E 5 HOH A 189 690 205 HOH HOH . 
E 5 HOH A 190 691 206 HOH HOH . 
E 5 HOH A 191 692 207 HOH HOH . 
E 5 HOH A 192 693 209 HOH HOH . 
E 5 HOH A 193 694 212 HOH HOH . 
E 5 HOH A 194 695 214 HOH HOH . 
E 5 HOH A 195 696 215 HOH HOH . 
E 5 HOH A 196 697 216 HOH HOH . 
E 5 HOH A 197 698 217 HOH HOH . 
E 5 HOH A 198 699 219 HOH HOH . 
E 5 HOH A 199 700 221 HOH HOH . 
E 5 HOH A 200 701 222 HOH HOH . 
E 5 HOH A 201 702 223 HOH HOH . 
E 5 HOH A 202 703 224 HOH HOH . 
E 5 HOH A 203 704 225 HOH HOH . 
E 5 HOH A 204 705 226 HOH HOH . 
E 5 HOH A 205 706 227 HOH HOH . 
E 5 HOH A 206 707 228 HOH HOH . 
E 5 HOH A 207 708 229 HOH HOH . 
E 5 HOH A 208 709 230 HOH HOH . 
E 5 HOH A 209 710 140 HOH HOH . 
E 5 HOH A 210 711 152 HOH HOH . 
E 5 HOH A 211 712 193 HOH HOH . 
F 5 HOH B 1 43 43 HOH HOH . 
F 5 HOH B 2 78 78 HOH HOH . 
F 5 HOH B 3 139 139 HOH HOH . 
F 5 HOH B 4 141 141 HOH HOH . 
F 5 HOH B 5 173 173 HOH HOH . 
F 5 HOH B 6 192 192 HOH HOH . 
F 5 HOH B 7 213 213 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 -15.919 35.728 5.382 1 42.13 ? C1 EDO 401 A 1 
HETATM 2 O O1 EDO . . . C 3 -16.235 35.422 4.045 1 28.01 ? O1 EDO 401 A 1 
HETATM 3 C C2 EDO . . . C 3 -15.554 34.448 6.078 1 29.18 ? C2 EDO 401 A 1 
HETATM 4 O O2 EDO . . . C 3 -14.159 34.126 5.981 1 25.06 ? O2 EDO 401 A 1 
#
_model_server_stats.io_time_ms              105 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           4 
#