data_3CYN
#
_model_server_result.job_id            syLdMbP0Z2UuukJT2iWwQg 
_model_server_result.datetime_utc      '2024-11-25 00:30:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3cyn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":7}' 
#
_entry.id    3CYN 
#
_exptl.entry_id    3CYN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          119.38 
_cell.angle_gamma         90 
_cell.entry_id            3CYN 
_cell.length_a            90.688 
_cell.length_b            120.854 
_cell.length_c            75.603 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3CYN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
PISA trimeric 3 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,M 1 1 
B,F,G,H,I,J,N 2 1 
C,K,L,O 3 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3CYN 
_atom_sites.fract_transf_matrix[1][1]    0.011027 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006207 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008274 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015179 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 SO4 A 1 6 6 SO4 SO4 . 
E 3 GOL A 1 7 7 GOL GOL . 
F 2 SO4 B 1 1 1 SO4 SO4 . 
G 2 SO4 B 1 3 3 SO4 SO4 . 
H 2 SO4 B 1 4 4 SO4 SO4 . 
I 2 SO4 B 1 5 5 SO4 SO4 . 
J 3 GOL B 1 8 8 GOL GOL . 
K 2 SO4 C 1 2 2 SO4 SO4 . 
L 3 GOL C 1 9 9 GOL GOL . 
M 4 HOH A 1 210 1 HOH HOH . 
M 4 HOH A 2 211 2 HOH HOH . 
M 4 HOH A 3 212 8 HOH HOH . 
M 4 HOH A 4 213 10 HOH HOH . 
M 4 HOH A 5 214 14 HOH HOH . 
M 4 HOH A 6 215 15 HOH HOH . 
M 4 HOH A 7 216 17 HOH HOH . 
M 4 HOH A 8 217 18 HOH HOH . 
M 4 HOH A 9 218 22 HOH HOH . 
M 4 HOH A 10 219 24 HOH HOH . 
M 4 HOH A 11 220 29 HOH HOH . 
M 4 HOH A 12 221 31 HOH HOH . 
M 4 HOH A 13 222 33 HOH HOH . 
M 4 HOH A 14 223 34 HOH HOH . 
M 4 HOH A 15 224 36 HOH HOH . 
M 4 HOH A 16 225 38 HOH HOH . 
M 4 HOH A 17 226 42 HOH HOH . 
M 4 HOH A 18 227 46 HOH HOH . 
M 4 HOH A 19 228 47 HOH HOH . 
M 4 HOH A 20 229 49 HOH HOH . 
M 4 HOH A 21 230 50 HOH HOH . 
M 4 HOH A 22 231 52 HOH HOH . 
M 4 HOH A 23 232 61 HOH HOH . 
M 4 HOH A 24 233 63 HOH HOH . 
M 4 HOH A 25 234 65 HOH HOH . 
M 4 HOH A 26 235 66 HOH HOH . 
M 4 HOH A 27 236 67 HOH HOH . 
M 4 HOH A 28 237 70 HOH HOH . 
M 4 HOH A 29 238 78 HOH HOH . 
M 4 HOH A 30 239 80 HOH HOH . 
M 4 HOH A 31 240 81 HOH HOH . 
M 4 HOH A 32 241 82 HOH HOH . 
M 4 HOH A 33 242 85 HOH HOH . 
M 4 HOH A 34 243 86 HOH HOH . 
M 4 HOH A 35 244 88 HOH HOH . 
M 4 HOH A 36 245 89 HOH HOH . 
M 4 HOH A 37 246 90 HOH HOH . 
M 4 HOH A 38 247 93 HOH HOH . 
M 4 HOH A 39 248 96 HOH HOH . 
M 4 HOH A 40 249 103 HOH HOH . 
M 4 HOH A 41 250 104 HOH HOH . 
M 4 HOH A 42 251 110 HOH HOH . 
M 4 HOH A 43 252 114 HOH HOH . 
M 4 HOH A 44 253 115 HOH HOH . 
M 4 HOH A 45 254 116 HOH HOH . 
M 4 HOH A 46 255 118 HOH HOH . 
M 4 HOH A 47 256 119 HOH HOH . 
M 4 HOH A 48 257 121 HOH HOH . 
M 4 HOH A 49 258 122 HOH HOH . 
M 4 HOH A 50 259 127 HOH HOH . 
M 4 HOH A 51 260 129 HOH HOH . 
M 4 HOH A 52 261 131 HOH HOH . 
M 4 HOH A 53 262 132 HOH HOH . 
M 4 HOH A 54 263 133 HOH HOH . 
M 4 HOH A 55 264 137 HOH HOH . 
M 4 HOH A 56 265 138 HOH HOH . 
M 4 HOH A 57 266 143 HOH HOH . 
M 4 HOH A 58 267 146 HOH HOH . 
M 4 HOH A 59 268 148 HOH HOH . 
M 4 HOH A 60 269 149 HOH HOH . 
M 4 HOH A 61 270 154 HOH HOH . 
M 4 HOH A 62 271 159 HOH HOH . 
M 4 HOH A 63 272 163 HOH HOH . 
M 4 HOH A 64 273 166 HOH HOH . 
M 4 HOH A 65 274 169 HOH HOH . 
M 4 HOH A 66 275 171 HOH HOH . 
M 4 HOH A 67 276 174 HOH HOH . 
M 4 HOH A 68 277 175 HOH HOH . 
M 4 HOH A 69 278 176 HOH HOH . 
M 4 HOH A 70 279 178 HOH HOH . 
M 4 HOH A 71 280 179 HOH HOH . 
M 4 HOH A 72 281 183 HOH HOH . 
M 4 HOH A 73 282 185 HOH HOH . 
M 4 HOH A 74 283 186 HOH HOH . 
M 4 HOH A 75 284 188 HOH HOH . 
M 4 HOH A 76 285 189 HOH HOH . 
M 4 HOH A 77 286 190 HOH HOH . 
M 4 HOH A 78 287 193 HOH HOH . 
M 4 HOH A 79 288 203 HOH HOH . 
M 4 HOH A 80 289 204 HOH HOH . 
M 4 HOH A 81 290 205 HOH HOH . 
M 4 HOH A 82 291 212 HOH HOH . 
M 4 HOH A 83 292 216 HOH HOH . 
M 4 HOH A 84 293 217 HOH HOH . 
M 4 HOH A 85 294 221 HOH HOH . 
M 4 HOH A 86 295 223 HOH HOH . 
M 4 HOH A 87 296 228 HOH HOH . 
M 4 HOH A 88 297 230 HOH HOH . 
M 4 HOH A 89 298 233 HOH HOH . 
M 4 HOH A 90 299 236 HOH HOH . 
M 4 HOH A 91 300 238 HOH HOH . 
M 4 HOH A 92 301 239 HOH HOH . 
M 4 HOH A 93 302 240 HOH HOH . 
M 4 HOH A 94 303 241 HOH HOH . 
N 4 HOH B 1 210 4 HOH HOH . 
N 4 HOH B 2 211 6 HOH HOH . 
N 4 HOH B 3 212 12 HOH HOH . 
N 4 HOH B 4 213 13 HOH HOH . 
N 4 HOH B 5 214 16 HOH HOH . 
N 4 HOH B 6 215 20 HOH HOH . 
N 4 HOH B 7 216 26 HOH HOH . 
N 4 HOH B 8 217 28 HOH HOH . 
N 4 HOH B 9 218 30 HOH HOH . 
N 4 HOH B 10 219 35 HOH HOH . 
N 4 HOH B 11 220 37 HOH HOH . 
N 4 HOH B 12 221 40 HOH HOH . 
N 4 HOH B 13 222 43 HOH HOH . 
N 4 HOH B 14 223 44 HOH HOH . 
N 4 HOH B 15 224 45 HOH HOH . 
N 4 HOH B 16 225 48 HOH HOH . 
N 4 HOH B 17 226 54 HOH HOH . 
N 4 HOH B 18 227 55 HOH HOH . 
N 4 HOH B 19 228 58 HOH HOH . 
N 4 HOH B 20 229 60 HOH HOH . 
N 4 HOH B 21 230 62 HOH HOH . 
N 4 HOH B 22 231 64 HOH HOH . 
N 4 HOH B 23 232 68 HOH HOH . 
N 4 HOH B 24 233 71 HOH HOH . 
N 4 HOH B 25 234 72 HOH HOH . 
N 4 HOH B 26 235 73 HOH HOH . 
N 4 HOH B 27 236 74 HOH HOH . 
N 4 HOH B 28 237 75 HOH HOH . 
N 4 HOH B 29 238 77 HOH HOH . 
N 4 HOH B 30 239 79 HOH HOH . 
N 4 HOH B 31 240 84 HOH HOH . 
N 4 HOH B 32 241 87 HOH HOH . 
N 4 HOH B 33 242 91 HOH HOH . 
N 4 HOH B 34 243 97 HOH HOH . 
N 4 HOH B 35 244 98 HOH HOH . 
N 4 HOH B 36 245 99 HOH HOH . 
N 4 HOH B 37 246 100 HOH HOH . 
N 4 HOH B 38 247 105 HOH HOH . 
N 4 HOH B 39 248 107 HOH HOH . 
N 4 HOH B 40 249 109 HOH HOH . 
N 4 HOH B 41 250 113 HOH HOH . 
N 4 HOH B 42 251 123 HOH HOH . 
N 4 HOH B 43 252 124 HOH HOH . 
N 4 HOH B 44 253 125 HOH HOH . 
N 4 HOH B 45 254 126 HOH HOH . 
N 4 HOH B 46 255 128 HOH HOH . 
N 4 HOH B 47 256 135 HOH HOH . 
N 4 HOH B 48 257 139 HOH HOH . 
N 4 HOH B 49 258 140 HOH HOH . 
N 4 HOH B 50 259 142 HOH HOH . 
N 4 HOH B 51 260 144 HOH HOH . 
N 4 HOH B 52 261 145 HOH HOH . 
N 4 HOH B 53 262 150 HOH HOH . 
N 4 HOH B 54 263 151 HOH HOH . 
N 4 HOH B 55 264 153 HOH HOH . 
N 4 HOH B 56 265 155 HOH HOH . 
N 4 HOH B 57 266 157 HOH HOH . 
N 4 HOH B 58 267 162 HOH HOH . 
N 4 HOH B 59 268 164 HOH HOH . 
N 4 HOH B 60 269 168 HOH HOH . 
N 4 HOH B 61 270 170 HOH HOH . 
N 4 HOH B 62 271 172 HOH HOH . 
N 4 HOH B 63 272 177 HOH HOH . 
N 4 HOH B 64 273 181 HOH HOH . 
N 4 HOH B 65 274 184 HOH HOH . 
N 4 HOH B 66 275 187 HOH HOH . 
N 4 HOH B 67 276 195 HOH HOH . 
N 4 HOH B 68 277 197 HOH HOH . 
N 4 HOH B 69 278 199 HOH HOH . 
N 4 HOH B 70 279 211 HOH HOH . 
N 4 HOH B 71 280 218 HOH HOH . 
N 4 HOH B 72 281 219 HOH HOH . 
N 4 HOH B 73 282 225 HOH HOH . 
N 4 HOH B 74 283 226 HOH HOH . 
N 4 HOH B 75 284 227 HOH HOH . 
N 4 HOH B 76 285 229 HOH HOH . 
N 4 HOH B 77 286 231 HOH HOH . 
N 4 HOH B 78 287 232 HOH HOH . 
N 4 HOH B 79 288 234 HOH HOH . 
N 4 HOH B 80 289 235 HOH HOH . 
N 4 HOH B 81 290 237 HOH HOH . 
N 4 HOH B 82 291 242 HOH HOH . 
O 4 HOH C 1 210 3 HOH HOH . 
O 4 HOH C 2 211 5 HOH HOH . 
O 4 HOH C 3 212 7 HOH HOH . 
O 4 HOH C 4 213 9 HOH HOH . 
O 4 HOH C 5 214 11 HOH HOH . 
O 4 HOH C 6 215 19 HOH HOH . 
O 4 HOH C 7 216 21 HOH HOH . 
O 4 HOH C 8 217 23 HOH HOH . 
O 4 HOH C 9 218 25 HOH HOH . 
O 4 HOH C 10 219 27 HOH HOH . 
O 4 HOH C 11 220 32 HOH HOH . 
O 4 HOH C 12 221 39 HOH HOH . 
O 4 HOH C 13 222 41 HOH HOH . 
O 4 HOH C 14 223 51 HOH HOH . 
O 4 HOH C 15 224 53 HOH HOH . 
O 4 HOH C 16 225 56 HOH HOH . 
O 4 HOH C 17 226 57 HOH HOH . 
O 4 HOH C 18 227 59 HOH HOH . 
O 4 HOH C 19 228 69 HOH HOH . 
O 4 HOH C 20 229 76 HOH HOH . 
O 4 HOH C 21 230 83 HOH HOH . 
O 4 HOH C 22 231 92 HOH HOH . 
O 4 HOH C 23 232 94 HOH HOH . 
O 4 HOH C 24 233 95 HOH HOH . 
O 4 HOH C 25 234 101 HOH HOH . 
O 4 HOH C 26 235 102 HOH HOH . 
O 4 HOH C 27 236 106 HOH HOH . 
O 4 HOH C 28 237 108 HOH HOH . 
O 4 HOH C 29 238 111 HOH HOH . 
O 4 HOH C 30 239 112 HOH HOH . 
O 4 HOH C 31 240 117 HOH HOH . 
O 4 HOH C 32 241 120 HOH HOH . 
O 4 HOH C 33 242 130 HOH HOH . 
O 4 HOH C 34 243 134 HOH HOH . 
O 4 HOH C 35 244 136 HOH HOH . 
O 4 HOH C 36 245 141 HOH HOH . 
O 4 HOH C 37 246 147 HOH HOH . 
O 4 HOH C 38 247 152 HOH HOH . 
O 4 HOH C 39 248 156 HOH HOH . 
O 4 HOH C 40 249 158 HOH HOH . 
O 4 HOH C 41 250 160 HOH HOH . 
O 4 HOH C 42 251 161 HOH HOH . 
O 4 HOH C 43 252 165 HOH HOH . 
O 4 HOH C 44 253 167 HOH HOH . 
O 4 HOH C 45 254 173 HOH HOH . 
O 4 HOH C 46 255 180 HOH HOH . 
O 4 HOH C 47 256 182 HOH HOH . 
O 4 HOH C 48 257 191 HOH HOH . 
O 4 HOH C 49 258 192 HOH HOH . 
O 4 HOH C 50 259 194 HOH HOH . 
O 4 HOH C 51 260 196 HOH HOH . 
O 4 HOH C 52 261 198 HOH HOH . 
O 4 HOH C 53 262 200 HOH HOH . 
O 4 HOH C 54 263 201 HOH HOH . 
O 4 HOH C 55 264 202 HOH HOH . 
O 4 HOH C 56 265 206 HOH HOH . 
O 4 HOH C 57 266 207 HOH HOH . 
O 4 HOH C 58 267 208 HOH HOH . 
O 4 HOH C 59 268 209 HOH HOH . 
O 4 HOH C 60 269 210 HOH HOH . 
O 4 HOH C 61 270 213 HOH HOH . 
O 4 HOH C 62 271 214 HOH HOH . 
O 4 HOH C 63 272 215 HOH HOH . 
O 4 HOH C 64 273 220 HOH HOH . 
O 4 HOH C 65 274 222 HOH HOH . 
O 4 HOH C 66 275 224 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 12.09 108.684 -1.525 1 44.91 ? C1 GOL 7 A 1 
HETATM 2 O O1 GOL . . . E 3 11.901 110.049 -1.21 1 46.22 ? O1 GOL 7 A 1 
HETATM 3 C C2 GOL . . . E 3 12.259 107.944 -0.218 1 35.68 ? C2 GOL 7 A 1 
HETATM 4 O O2 GOL . . . E 3 13.373 108.478 0.419 1 39.88 ? O2 GOL 7 A 1 
HETATM 5 C C3 GOL . . . E 3 12.461 106.451 -0.394 1 43.78 ? C3 GOL 7 A 1 
HETATM 6 O O3 GOL . . . E 3 11.39 105.783 0.249 1 51.62 ? O3 GOL 7 A 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#