data_3CZH # _model_server_result.job_id ggLC5fg24KPEDElAsUTp4Q _model_server_result.datetime_utc '2024-12-22 04:58:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3czh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":12}' # _entry.id 3CZH # _exptl.entry_id 3CZH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight ? _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'UNKNOWN ATOM OR ION' _entity.pdbx_number_of_molecules 21 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3CZH _cell.length_a 137.361 _cell.length_b 163.393 _cell.length_c 152.289 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CZH _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,J,K,L,M,N,O,P,DA 1 1 B,D,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,EA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N ? 3 Y N N ? 3 Z N N ? 3 AA N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 1 7 GLC GLC C1 O1 . O4 HO4 . sing 2 ? 2 2 1 GLC GLC C1 O1 . O4 HO4 . sing 3 ? 2 3 2 GLC GLC C1 O1 . O4 HO4 . sing 4 ? 2 4 3 GLC GLC C1 O1 . O4 HO4 . sing 5 ? 2 5 4 GLC GLC C1 O1 . O4 HO4 . sing 6 ? 2 6 5 GLC GLC C1 O1 . O4 HO4 . sing 7 ? 2 7 6 GLC GLC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 C 1 GLC A 603 BCD 2 n C GLC 2 C 2 GLC A 603 BCD 2 n C GLC 3 C 3 GLC A 603 BCD 2 n C GLC 4 C 4 GLC A 603 BCD 2 n C GLC 5 C 5 GLC A 603 BCD 2 n C GLC 6 C 6 GLC A 603 BCD 2 n C GLC 7 C 7 GLC A 603 BCD 2 n D GLC 1 D 1 GLC B 603 BCD 2 n D GLC 2 D 2 GLC B 603 BCD 2 n D GLC 3 D 3 GLC B 603 BCD 2 n D GLC 4 D 4 GLC B 603 BCD 2 n D GLC 5 D 5 GLC B 603 BCD 2 n D GLC 6 D 6 GLC B 603 BCD 2 n D GLC 7 D 7 GLC B 603 BCD # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O4 GLC . C GLC 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 sing covale ? covale2 C C1 GLC . C GLC 1 1_555 C O4 GLC . C GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 sing covale ? covale3 C O4 GLC . C GLC 2 1_555 C C1 GLC . C GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 sing covale ? covale4 C O4 GLC . C GLC 3 1_555 C C1 GLC . C GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 sing covale ? covale5 C O4 GLC . C GLC 4 1_555 C C1 GLC . C GLC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 sing covale ? covale6 C O4 GLC . C GLC 5 1_555 C C1 GLC . C GLC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 sing covale ? covale7 C O4 GLC . C GLC 6 1_555 C C1 GLC . C GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 sing covale ? covale8 D O4 GLC . D GLC 1 1_555 D C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 sing covale ? covale9 D C1 GLC . D GLC 1 1_555 D O4 GLC . D GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 sing covale ? covale10 D O4 GLC . D GLC 2 1_555 D C1 GLC . D GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 sing covale ? covale11 D O4 GLC . D GLC 3 1_555 D C1 GLC . D GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 sing covale ? covale12 D O4 GLC . D GLC 4 1_555 D C1 GLC . D GLC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 sing covale ? covale13 D O4 GLC . D GLC 5 1_555 D C1 GLC . D GLC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 sing covale ? covale14 D O4 GLC . D GLC 6 1_555 D C1 GLC . D GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 sing metalc ? metalc1 A SG CYS 422 A CYS 448 1_555 O FE HEM . A HEM 601 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.351 ? metalc ? metalc2 A SG CYS 422 A CYS 448 1_555 O FE HEM . A HEM 601 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.058 ? metalc ? metalc3 B SG CYS 422 B CYS 448 1_555 BA FE HEM . B HEM 601 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.423 ? metalc ? metalc4 B SG CYS 422 B CYS 448 1_555 BA FE HEM . B HEM 601 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.454 ? # _chem_comp.formula ? _chem_comp.formula_weight ? _chem_comp.id UNX _chem_comp.mon_nstd_flag . _chem_comp.name 'UNKNOWN ATOM OR ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3CZH _atom_sites.fract_transf_matrix[1][1] 0.00728 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006566 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 UNX A 1 1 1 UNX UNX . F 3 UNX A 1 3 3 UNX UNX . G 3 UNX A 1 4 4 UNX UNX . H 3 UNX A 1 5 5 UNX UNX . I 3 UNX A 1 6 6 UNX UNX . J 3 UNX A 1 7 7 UNX UNX . K 3 UNX A 1 8 8 UNX UNX . L 3 UNX A 1 16 16 UNX UNX . M 3 UNX A 1 17 17 UNX UNX . N 3 UNX A 1 19 19 UNX UNX . O 4 HEM A 1 601 601 HEM HEM . P 5 D2V A 1 602 602 D2V D2V . Q 3 UNX B 1 2 2 UNX UNX . R 3 UNX B 1 9 9 UNX UNX . S 3 UNX B 1 10 10 UNX UNX . T 3 UNX B 1 11 11 UNX UNX . U 3 UNX B 1 12 12 UNX UNX . V 3 UNX B 1 13 13 UNX UNX . W 3 UNX B 1 14 14 UNX UNX . X 3 UNX B 1 15 15 UNX UNX . Y 3 UNX B 1 18 18 UNX UNX . Z 3 UNX B 1 20 20 UNX UNX . AA 3 UNX B 1 21 21 UNX UNX . BA 4 HEM B 1 601 601 HEM HEM . CA 5 D2V B 1 602 602 D2V D2V . DA 6 HOH A 1 604 2 HOH HOH . DA 6 HOH A 2 605 11 HOH HOH . DA 6 HOH A 3 606 12 HOH HOH . DA 6 HOH A 4 607 17 HOH HOH . DA 6 HOH A 5 608 18 HOH HOH . DA 6 HOH A 6 609 19 HOH HOH . DA 6 HOH A 7 610 20 HOH HOH . DA 6 HOH A 8 611 21 HOH HOH . DA 6 HOH A 9 612 22 HOH HOH . DA 6 HOH A 10 613 23 HOH HOH . DA 6 HOH A 11 614 25 HOH HOH . DA 6 HOH A 12 615 26 HOH HOH . DA 6 HOH A 13 616 27 HOH HOH . DA 6 HOH A 14 617 28 HOH HOH . DA 6 HOH A 15 618 30 HOH HOH . DA 6 HOH A 16 619 31 HOH HOH . DA 6 HOH A 17 620 32 HOH HOH . DA 6 HOH A 18 621 33 HOH HOH . DA 6 HOH A 19 622 34 HOH HOH . DA 6 HOH A 20 623 35 HOH HOH . DA 6 HOH A 21 624 36 HOH HOH . DA 6 HOH A 22 625 37 HOH HOH . DA 6 HOH A 23 626 38 HOH HOH . DA 6 HOH A 24 627 39 HOH HOH . DA 6 HOH A 25 628 40 HOH HOH . DA 6 HOH A 26 629 41 HOH HOH . DA 6 HOH A 27 630 42 HOH HOH . DA 6 HOH A 28 631 43 HOH HOH . DA 6 HOH A 29 632 44 HOH HOH . DA 6 HOH A 30 633 45 HOH HOH . DA 6 HOH A 31 634 46 HOH HOH . DA 6 HOH A 32 635 47 HOH HOH . DA 6 HOH A 33 636 48 HOH HOH . DA 6 HOH A 34 637 49 HOH HOH . DA 6 HOH A 35 638 50 HOH HOH . DA 6 HOH A 36 639 51 HOH HOH . DA 6 HOH A 37 640 52 HOH HOH . DA 6 HOH A 38 641 53 HOH HOH . DA 6 HOH A 39 642 54 HOH HOH . DA 6 HOH A 40 643 55 HOH HOH . DA 6 HOH A 41 644 56 HOH HOH . DA 6 HOH A 42 645 57 HOH HOH . DA 6 HOH A 43 646 58 HOH HOH . DA 6 HOH A 44 647 59 HOH HOH . DA 6 HOH A 45 648 60 HOH HOH . DA 6 HOH A 46 649 61 HOH HOH . DA 6 HOH A 47 650 62 HOH HOH . DA 6 HOH A 48 651 63 HOH HOH . DA 6 HOH A 49 652 64 HOH HOH . DA 6 HOH A 50 653 65 HOH HOH . DA 6 HOH A 51 654 66 HOH HOH . DA 6 HOH A 52 655 67 HOH HOH . DA 6 HOH A 53 656 68 HOH HOH . DA 6 HOH A 54 657 69 HOH HOH . DA 6 HOH A 55 658 70 HOH HOH . DA 6 HOH A 56 659 71 HOH HOH . DA 6 HOH A 57 660 72 HOH HOH . DA 6 HOH A 58 661 73 HOH HOH . DA 6 HOH A 59 662 74 HOH HOH . DA 6 HOH A 60 663 75 HOH HOH . DA 6 HOH A 61 664 76 HOH HOH . DA 6 HOH A 62 665 77 HOH HOH . DA 6 HOH A 63 666 78 HOH HOH . DA 6 HOH A 64 667 79 HOH HOH . DA 6 HOH A 65 668 80 HOH HOH . DA 6 HOH A 66 669 81 HOH HOH . DA 6 HOH A 67 670 82 HOH HOH . DA 6 HOH A 68 671 83 HOH HOH . DA 6 HOH A 69 672 84 HOH HOH . DA 6 HOH A 70 673 85 HOH HOH . DA 6 HOH A 71 674 86 HOH HOH . DA 6 HOH A 72 675 128 HOH HOH . DA 6 HOH A 73 676 129 HOH HOH . DA 6 HOH A 74 677 130 HOH HOH . DA 6 HOH A 75 678 131 HOH HOH . DA 6 HOH A 76 679 133 HOH HOH . DA 6 HOH A 77 680 134 HOH HOH . DA 6 HOH A 78 681 135 HOH HOH . DA 6 HOH A 79 682 136 HOH HOH . DA 6 HOH A 80 683 137 HOH HOH . DA 6 HOH A 81 684 139 HOH HOH . DA 6 HOH A 82 685 141 HOH HOH . DA 6 HOH A 83 686 142 HOH HOH . DA 6 HOH A 84 687 143 HOH HOH . DA 6 HOH A 85 688 144 HOH HOH . DA 6 HOH A 86 689 145 HOH HOH . EA 6 HOH B 1 604 1 HOH HOH . EA 6 HOH B 2 605 3 HOH HOH . EA 6 HOH B 3 606 4 HOH HOH . EA 6 HOH B 4 607 5 HOH HOH . EA 6 HOH B 5 608 6 HOH HOH . EA 6 HOH B 6 609 7 HOH HOH . EA 6 HOH B 7 610 8 HOH HOH . EA 6 HOH B 8 611 9 HOH HOH . EA 6 HOH B 9 612 10 HOH HOH . EA 6 HOH B 10 613 13 HOH HOH . EA 6 HOH B 11 614 14 HOH HOH . EA 6 HOH B 12 615 15 HOH HOH . EA 6 HOH B 13 616 16 HOH HOH . EA 6 HOH B 14 617 29 HOH HOH . EA 6 HOH B 15 618 87 HOH HOH . EA 6 HOH B 16 619 88 HOH HOH . EA 6 HOH B 17 620 89 HOH HOH . EA 6 HOH B 18 621 90 HOH HOH . EA 6 HOH B 19 622 91 HOH HOH . EA 6 HOH B 20 623 92 HOH HOH . EA 6 HOH B 21 624 93 HOH HOH . EA 6 HOH B 22 625 94 HOH HOH . EA 6 HOH B 23 626 95 HOH HOH . EA 6 HOH B 24 627 96 HOH HOH . EA 6 HOH B 25 628 97 HOH HOH . EA 6 HOH B 26 629 98 HOH HOH . EA 6 HOH B 27 630 99 HOH HOH . EA 6 HOH B 28 631 100 HOH HOH . EA 6 HOH B 29 632 101 HOH HOH . EA 6 HOH B 30 633 102 HOH HOH . EA 6 HOH B 31 634 103 HOH HOH . EA 6 HOH B 32 635 104 HOH HOH . EA 6 HOH B 33 636 105 HOH HOH . EA 6 HOH B 34 637 106 HOH HOH . EA 6 HOH B 35 638 107 HOH HOH . EA 6 HOH B 36 639 108 HOH HOH . EA 6 HOH B 37 640 109 HOH HOH . EA 6 HOH B 38 641 110 HOH HOH . EA 6 HOH B 39 642 111 HOH HOH . EA 6 HOH B 40 643 112 HOH HOH . EA 6 HOH B 41 644 113 HOH HOH . EA 6 HOH B 42 645 114 HOH HOH . EA 6 HOH B 43 646 115 HOH HOH . EA 6 HOH B 44 647 116 HOH HOH . EA 6 HOH B 45 648 117 HOH HOH . EA 6 HOH B 46 649 118 HOH HOH . EA 6 HOH B 47 650 119 HOH HOH . EA 6 HOH B 48 651 120 HOH HOH . EA 6 HOH B 49 652 121 HOH HOH . EA 6 HOH B 50 653 122 HOH HOH . EA 6 HOH B 51 654 123 HOH HOH . EA 6 HOH B 52 655 124 HOH HOH . EA 6 HOH B 53 656 125 HOH HOH . EA 6 HOH B 54 657 126 HOH HOH . EA 6 HOH B 55 658 127 HOH HOH . EA 6 HOH B 56 659 132 HOH HOH . EA 6 HOH B 57 660 138 HOH HOH . EA 6 HOH B 58 661 140 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol X _atom_site.label_atom_id UNK _atom_site.label_comp_id UNX _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id U _atom_site.label_entity_id 3 _atom_site.Cartn_x -37.441 _atom_site.Cartn_y 51.056 _atom_site.Cartn_z -25.464 _atom_site.occupancy 0.01 _atom_site.B_iso_or_equiv 2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id UNK _atom_site.auth_comp_id UNX _atom_site.auth_seq_id 12 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #