data_3CZM # _model_server_result.job_id smxQ0Njl0QH3B8iVtAFwFA _model_server_result.datetime_utc '2024-11-13 04:24:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3czm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":708}' # _entry.id 3CZM # _exptl.entry_id 3CZM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 130.059 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-HYDROXY-1,2,5-OXADIAZOLE-3-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3CZM _cell.length_a 140.949 _cell.length_b 140.949 _cell.length_c 75.01 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CZM _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 75.01 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C3 H2 N2 O4' _chem_comp.formula_weight 130.059 _chem_comp.id OXQ _chem_comp.mon_nstd_flag . _chem_comp.name '4-HYDROXY-1,2,5-OXADIAZOLE-3-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O9 C6 OXQ sing 312 n n O9 HO9 OXQ sing 313 n n C6 O8 OXQ doub 314 n n C6 C2 OXQ sing 315 n n C2 C1 OXQ sing 316 n y C2 N3 OXQ doub 317 n y C1 O7 OXQ sing 318 n n C1 N5 OXQ doub 319 n y O7 HO7 OXQ sing 320 n n N3 O4 OXQ sing 321 n y O4 N5 OXQ sing 322 n y # _atom_sites.entry_id 3CZM _atom_sites.fract_transf_matrix[1][1] 0.007095 _atom_sites.fract_transf_matrix[1][2] 0.004096 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013332 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 401 401 NAD NAD . D 3 OXQ A 1 708 708 OXQ OXQ . E 2 NAD B 1 501 501 NAD NAD . F 3 OXQ B 1 706 706 OXQ OXQ . G 4 HOH A 1 709 709 HOH HOH . G 4 HOH A 2 710 710 HOH HOH . G 4 HOH A 3 711 711 HOH HOH . G 4 HOH A 4 712 712 HOH HOH . G 4 HOH A 5 713 713 HOH HOH . G 4 HOH A 6 714 714 HOH HOH . G 4 HOH A 7 715 715 HOH HOH . G 4 HOH A 8 716 716 HOH HOH . G 4 HOH A 9 717 717 HOH HOH . G 4 HOH A 10 718 718 HOH HOH . G 4 HOH A 11 719 719 HOH HOH . G 4 HOH A 12 720 720 HOH HOH . G 4 HOH A 13 721 721 HOH HOH . G 4 HOH A 14 722 722 HOH HOH . G 4 HOH A 15 723 723 HOH HOH . G 4 HOH A 16 724 724 HOH HOH . G 4 HOH A 17 725 725 HOH HOH . G 4 HOH A 18 726 726 HOH HOH . G 4 HOH A 19 727 727 HOH HOH . G 4 HOH A 20 728 728 HOH HOH . G 4 HOH A 21 729 729 HOH HOH . G 4 HOH A 22 730 730 HOH HOH . G 4 HOH A 23 731 731 HOH HOH . G 4 HOH A 24 732 732 HOH HOH . G 4 HOH A 25 733 733 HOH HOH . G 4 HOH A 26 734 734 HOH HOH . G 4 HOH A 27 735 735 HOH HOH . G 4 HOH A 28 736 736 HOH HOH . G 4 HOH A 29 737 737 HOH HOH . G 4 HOH A 30 738 738 HOH HOH . G 4 HOH A 31 739 739 HOH HOH . G 4 HOH A 32 740 740 HOH HOH . G 4 HOH A 33 741 741 HOH HOH . G 4 HOH A 34 742 742 HOH HOH . G 4 HOH A 35 743 743 HOH HOH . G 4 HOH A 36 744 744 HOH HOH . G 4 HOH A 37 745 745 HOH HOH . G 4 HOH A 38 746 746 HOH HOH . G 4 HOH A 39 747 747 HOH HOH . G 4 HOH A 40 748 748 HOH HOH . G 4 HOH A 41 749 749 HOH HOH . G 4 HOH A 42 750 750 HOH HOH . G 4 HOH A 43 751 751 HOH HOH . G 4 HOH A 44 752 752 HOH HOH . G 4 HOH A 45 753 753 HOH HOH . G 4 HOH A 46 754 754 HOH HOH . G 4 HOH A 47 755 755 HOH HOH . G 4 HOH A 48 756 756 HOH HOH . G 4 HOH A 49 757 757 HOH HOH . G 4 HOH A 50 758 758 HOH HOH . G 4 HOH A 51 759 759 HOH HOH . G 4 HOH A 52 760 760 HOH HOH . G 4 HOH A 53 761 761 HOH HOH . G 4 HOH A 54 762 762 HOH HOH . G 4 HOH A 55 763 763 HOH HOH . G 4 HOH A 56 764 764 HOH HOH . G 4 HOH A 57 765 765 HOH HOH . G 4 HOH A 58 766 766 HOH HOH . G 4 HOH A 59 767 767 HOH HOH . G 4 HOH A 60 768 768 HOH HOH . G 4 HOH A 61 769 769 HOH HOH . G 4 HOH A 62 770 770 HOH HOH . G 4 HOH A 63 771 771 HOH HOH . G 4 HOH A 64 772 772 HOH HOH . G 4 HOH A 65 773 773 HOH HOH . G 4 HOH A 66 774 774 HOH HOH . G 4 HOH A 67 775 775 HOH HOH . G 4 HOH A 68 776 776 HOH HOH . G 4 HOH A 69 777 777 HOH HOH . G 4 HOH A 70 778 778 HOH HOH . G 4 HOH A 71 779 779 HOH HOH . G 4 HOH A 72 780 780 HOH HOH . G 4 HOH A 73 781 781 HOH HOH . G 4 HOH A 74 782 782 HOH HOH . G 4 HOH A 75 783 783 HOH HOH . G 4 HOH A 76 784 784 HOH HOH . G 4 HOH A 77 785 785 HOH HOH . G 4 HOH A 78 786 786 HOH HOH . G 4 HOH A 79 787 787 HOH HOH . G 4 HOH A 80 788 788 HOH HOH . G 4 HOH A 81 789 789 HOH HOH . G 4 HOH A 82 790 790 HOH HOH . G 4 HOH A 83 791 791 HOH HOH . G 4 HOH A 84 792 792 HOH HOH . G 4 HOH A 85 793 793 HOH HOH . G 4 HOH A 86 794 794 HOH HOH . G 4 HOH A 87 795 795 HOH HOH . G 4 HOH A 88 796 796 HOH HOH . G 4 HOH A 89 797 797 HOH HOH . G 4 HOH A 90 798 798 HOH HOH . G 4 HOH A 91 799 799 HOH HOH . G 4 HOH A 92 800 800 HOH HOH . G 4 HOH A 93 801 801 HOH HOH . G 4 HOH A 94 802 802 HOH HOH . G 4 HOH A 95 803 803 HOH HOH . G 4 HOH A 96 804 804 HOH HOH . G 4 HOH A 97 805 805 HOH HOH . G 4 HOH A 98 806 806 HOH HOH . G 4 HOH A 99 807 807 HOH HOH . G 4 HOH A 100 808 808 HOH HOH . G 4 HOH A 101 809 809 HOH HOH . G 4 HOH A 102 810 810 HOH HOH . G 4 HOH A 103 811 811 HOH HOH . G 4 HOH A 104 812 812 HOH HOH . G 4 HOH A 105 813 813 HOH HOH . G 4 HOH A 106 814 814 HOH HOH . G 4 HOH A 107 815 815 HOH HOH . G 4 HOH A 108 816 816 HOH HOH . G 4 HOH A 109 817 817 HOH HOH . G 4 HOH A 110 818 818 HOH HOH . G 4 HOH A 111 819 819 HOH HOH . G 4 HOH A 112 820 820 HOH HOH . G 4 HOH A 113 821 821 HOH HOH . G 4 HOH A 114 822 822 HOH HOH . G 4 HOH A 115 823 823 HOH HOH . G 4 HOH A 116 824 824 HOH HOH . G 4 HOH A 117 825 825 HOH HOH . G 4 HOH A 118 826 826 HOH HOH . G 4 HOH A 119 827 827 HOH HOH . G 4 HOH A 120 828 828 HOH HOH . H 4 HOH B 1 756 756 HOH HOH . H 4 HOH B 2 757 757 HOH HOH . H 4 HOH B 3 758 758 HOH HOH . H 4 HOH B 4 759 759 HOH HOH . H 4 HOH B 5 760 760 HOH HOH . H 4 HOH B 6 761 761 HOH HOH . H 4 HOH B 7 762 762 HOH HOH . H 4 HOH B 8 763 763 HOH HOH . H 4 HOH B 9 764 764 HOH HOH . H 4 HOH B 10 765 765 HOH HOH . H 4 HOH B 11 766 766 HOH HOH . H 4 HOH B 12 767 767 HOH HOH . H 4 HOH B 13 768 768 HOH HOH . H 4 HOH B 14 769 769 HOH HOH . H 4 HOH B 15 770 770 HOH HOH . H 4 HOH B 16 771 771 HOH HOH . H 4 HOH B 17 772 772 HOH HOH . H 4 HOH B 18 773 773 HOH HOH . H 4 HOH B 19 774 774 HOH HOH . H 4 HOH B 20 775 775 HOH HOH . H 4 HOH B 21 776 776 HOH HOH . H 4 HOH B 22 777 777 HOH HOH . H 4 HOH B 23 778 778 HOH HOH . H 4 HOH B 24 779 779 HOH HOH . H 4 HOH B 25 780 780 HOH HOH . H 4 HOH B 26 781 781 HOH HOH . H 4 HOH B 27 782 782 HOH HOH . H 4 HOH B 28 783 783 HOH HOH . H 4 HOH B 29 784 784 HOH HOH . H 4 HOH B 30 785 785 HOH HOH . H 4 HOH B 31 786 786 HOH HOH . H 4 HOH B 32 787 787 HOH HOH . H 4 HOH B 33 788 788 HOH HOH . H 4 HOH B 34 789 789 HOH HOH . H 4 HOH B 35 790 790 HOH HOH . H 4 HOH B 36 791 791 HOH HOH . H 4 HOH B 37 792 792 HOH HOH . H 4 HOH B 38 793 793 HOH HOH . H 4 HOH B 39 794 794 HOH HOH . H 4 HOH B 40 795 795 HOH HOH . H 4 HOH B 41 796 796 HOH HOH . H 4 HOH B 42 797 797 HOH HOH . H 4 HOH B 43 798 798 HOH HOH . H 4 HOH B 44 799 799 HOH HOH . H 4 HOH B 45 800 800 HOH HOH . H 4 HOH B 46 801 801 HOH HOH . H 4 HOH B 47 802 802 HOH HOH . H 4 HOH B 48 803 803 HOH HOH . H 4 HOH B 49 804 804 HOH HOH . H 4 HOH B 50 805 805 HOH HOH . H 4 HOH B 51 806 806 HOH HOH . H 4 HOH B 52 807 807 HOH HOH . H 4 HOH B 53 808 808 HOH HOH . H 4 HOH B 54 809 809 HOH HOH . H 4 HOH B 55 810 810 HOH HOH . H 4 HOH B 56 811 811 HOH HOH . H 4 HOH B 57 812 812 HOH HOH . H 4 HOH B 58 813 813 HOH HOH . H 4 HOH B 59 814 814 HOH HOH . H 4 HOH B 60 815 815 HOH HOH . H 4 HOH B 61 816 816 HOH HOH . H 4 HOH B 62 817 817 HOH HOH . H 4 HOH B 63 818 818 HOH HOH . H 4 HOH B 64 819 819 HOH HOH . H 4 HOH B 65 820 820 HOH HOH . H 4 HOH B 66 821 821 HOH HOH . H 4 HOH B 67 822 822 HOH HOH . H 4 HOH B 68 823 823 HOH HOH . H 4 HOH B 69 824 824 HOH HOH . H 4 HOH B 70 825 825 HOH HOH . H 4 HOH B 71 826 826 HOH HOH . H 4 HOH B 72 827 827 HOH HOH . H 4 HOH B 73 828 828 HOH HOH . H 4 HOH B 74 829 829 HOH HOH . H 4 HOH B 75 830 830 HOH HOH . H 4 HOH B 76 831 831 HOH HOH . H 4 HOH B 77 832 832 HOH HOH . H 4 HOH B 78 833 833 HOH HOH . H 4 HOH B 79 834 834 HOH HOH . H 4 HOH B 80 835 835 HOH HOH . H 4 HOH B 81 836 836 HOH HOH . H 4 HOH B 82 837 837 HOH HOH . H 4 HOH B 83 838 838 HOH HOH . H 4 HOH B 84 839 839 HOH HOH . H 4 HOH B 85 840 840 HOH HOH . H 4 HOH B 86 841 841 HOH HOH . H 4 HOH B 87 842 842 HOH HOH . H 4 HOH B 88 843 843 HOH HOH . H 4 HOH B 89 844 844 HOH HOH . H 4 HOH B 90 845 845 HOH HOH . H 4 HOH B 91 846 846 HOH HOH . H 4 HOH B 92 847 847 HOH HOH . H 4 HOH B 93 848 848 HOH HOH . H 4 HOH B 94 849 849 HOH HOH . H 4 HOH B 95 850 850 HOH HOH . H 4 HOH B 96 851 851 HOH HOH . H 4 HOH B 97 852 852 HOH HOH . H 4 HOH B 98 853 853 HOH HOH . H 4 HOH B 99 854 854 HOH HOH . H 4 HOH B 100 855 855 HOH HOH . H 4 HOH B 101 856 856 HOH HOH . H 4 HOH B 102 857 857 HOH HOH . H 4 HOH B 103 858 858 HOH HOH . H 4 HOH B 104 859 859 HOH HOH . H 4 HOH B 105 860 860 HOH HOH . H 4 HOH B 106 861 861 HOH HOH . H 4 HOH B 107 862 862 HOH HOH . H 4 HOH B 108 863 863 HOH HOH . H 4 HOH B 109 864 864 HOH HOH . H 4 HOH B 110 865 865 HOH HOH . H 4 HOH B 111 866 866 HOH HOH . H 4 HOH B 112 867 867 HOH HOH . H 4 HOH B 113 868 868 HOH HOH . H 4 HOH B 114 869 869 HOH HOH . H 4 HOH B 115 870 870 HOH HOH . H 4 HOH B 116 871 871 HOH HOH . H 4 HOH B 117 872 872 HOH HOH . H 4 HOH B 118 873 873 HOH HOH . H 4 HOH B 119 874 874 HOH HOH . H 4 HOH B 120 875 875 HOH HOH . H 4 HOH B 121 876 876 HOH HOH . H 4 HOH B 122 877 877 HOH HOH . H 4 HOH B 123 878 878 HOH HOH . H 4 HOH B 124 879 879 HOH HOH . H 4 HOH B 125 880 880 HOH HOH . H 4 HOH B 126 881 881 HOH HOH . H 4 HOH B 127 882 882 HOH HOH . H 4 HOH B 128 883 883 HOH HOH . H 4 HOH B 129 884 884 HOH HOH . H 4 HOH B 130 885 885 HOH HOH . H 4 HOH B 131 886 886 HOH HOH . H 4 HOH B 132 887 887 HOH HOH . H 4 HOH B 133 888 888 HOH HOH . H 4 HOH B 134 889 889 HOH HOH . H 4 HOH B 135 890 890 HOH HOH . H 4 HOH B 136 891 891 HOH HOH . H 4 HOH B 137 892 892 HOH HOH . H 4 HOH B 138 893 893 HOH HOH . H 4 HOH B 139 894 894 HOH HOH . H 4 HOH B 140 895 895 HOH HOH . H 4 HOH B 141 896 896 HOH HOH . H 4 HOH B 142 897 897 HOH HOH . H 4 HOH B 143 898 898 HOH HOH . H 4 HOH B 144 899 899 HOH HOH . H 4 HOH B 145 900 900 HOH HOH . H 4 HOH B 146 901 901 HOH HOH . H 4 HOH B 147 902 902 HOH HOH . H 4 HOH B 148 903 903 HOH HOH . H 4 HOH B 149 904 904 HOH HOH . H 4 HOH B 150 905 905 HOH HOH . H 4 HOH B 151 906 906 HOH HOH . H 4 HOH B 152 907 907 HOH HOH . H 4 HOH B 153 908 908 HOH HOH . H 4 HOH B 154 909 909 HOH HOH . H 4 HOH B 155 910 910 HOH HOH . H 4 HOH B 156 911 911 HOH HOH . H 4 HOH B 157 912 912 HOH HOH . H 4 HOH B 158 913 913 HOH HOH . H 4 HOH B 159 914 914 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O9 OXQ . . . D 3 48.963 64.727 62.001 1 35.42 ? O9 OXQ 708 A 1 HETATM 2 C C6 OXQ . . . D 3 48.86 63.537 62.39 1 36.07 ? C6 OXQ 708 A 1 HETATM 3 O O8 OXQ . . . D 3 49.682 62.64 62.126 1 36.7 ? O8 OXQ 708 A 1 HETATM 4 C C2 OXQ . . . D 3 47.653 63.183 63.257 1 36.07 ? C2 OXQ 708 A 1 HETATM 5 C C1 OXQ . . . D 3 47.29 61.901 63.644 1 37.11 ? C1 OXQ 708 A 1 HETATM 6 O O7 OXQ . . . D 3 47.938 60.754 63.301 1 36.33 ? O7 OXQ 708 A 1 HETATM 7 N N3 OXQ . . . D 3 46.788 64.057 63.745 1 36.55 ? N3 OXQ 708 A 1 HETATM 8 O O4 OXQ . . . D 3 45.836 63.316 64.481 1 36.3 ? O4 OXQ 708 A 1 HETATM 9 N N5 OXQ . . . D 3 46.193 61.956 64.392 1 36.97 ? N5 OXQ 708 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #