data_3CZR # _model_server_result.job_id lfHBOJJc4zQ27qKaCyStMw _model_server_result.datetime_utc '2024-11-15 06:03:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3czr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3CZR # _exptl.entry_id 3CZR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3CZR _cell.length_a 110.216 _cell.length_b 110.216 _cell.length_c 132.991 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3CZR _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 398 n n PA O2A NAP sing 399 n n PA O5B NAP sing 400 n n PA O3 NAP sing 401 n n O2A HOA2 NAP sing 402 n n O5B C5B NAP sing 403 n n C5B C4B NAP sing 404 n n C5B H51A NAP sing 405 n n C5B H52A NAP sing 406 n n C4B O4B NAP sing 407 n n C4B C3B NAP sing 408 n n C4B H4B NAP sing 409 n n O4B C1B NAP sing 410 n n C3B O3B NAP sing 411 n n C3B C2B NAP sing 412 n n C3B H3B NAP sing 413 n n O3B HO3A NAP sing 414 n n C2B O2B NAP sing 415 n n C2B C1B NAP sing 416 n n C2B H2B NAP sing 417 n n O2B P2B NAP sing 418 n n C1B N9A NAP sing 419 n n C1B H1B NAP sing 420 n n N9A C8A NAP sing 421 n y N9A C4A NAP sing 422 n y C8A N7A NAP doub 423 n y C8A H8A NAP sing 424 n n N7A C5A NAP sing 425 n y C5A C6A NAP sing 426 n y C5A C4A NAP doub 427 n y C6A N6A NAP sing 428 n n C6A N1A NAP doub 429 n y N6A H61A NAP sing 430 n n N6A H62A NAP sing 431 n n N1A C2A NAP sing 432 n y C2A N3A NAP doub 433 n y C2A H2A NAP sing 434 n n N3A C4A NAP sing 435 n y O3 PN NAP sing 436 n n PN O1N NAP doub 437 n n PN O2N NAP sing 438 n n PN O5D NAP sing 439 n n O5D C5D NAP sing 440 n n C5D C4D NAP sing 441 n n C5D H51N NAP sing 442 n n C5D H52N NAP sing 443 n n C4D O4D NAP sing 444 n n C4D C3D NAP sing 445 n n C4D H4D NAP sing 446 n n O4D C1D NAP sing 447 n n C3D O3D NAP sing 448 n n C3D C2D NAP sing 449 n n C3D H3D NAP sing 450 n n O3D HO3N NAP sing 451 n n C2D O2D NAP sing 452 n n C2D C1D NAP sing 453 n n C2D H2D NAP sing 454 n n O2D HO2N NAP sing 455 n n C1D N1N NAP sing 456 n n C1D H1D NAP sing 457 n n N1N C2N NAP sing 458 n y N1N C6N NAP doub 459 n y C2N C3N NAP doub 460 n y C2N H2N NAP sing 461 n n C3N C7N NAP sing 462 n n C3N C4N NAP sing 463 n y C7N O7N NAP doub 464 n n C7N N7N NAP sing 465 n n N7N H71N NAP sing 466 n n N7N H72N NAP sing 467 n n C4N C5N NAP doub 468 n y C4N H4N NAP sing 469 n n C5N C6N NAP sing 470 n y C5N H5N NAP sing 471 n n C6N H6N NAP sing 472 n n P2B O1X NAP doub 473 n n P2B O2X NAP sing 474 n n P2B O3X NAP sing 475 n n O2X HOP2 NAP sing 476 n n O3X HOP3 NAP sing 477 n n # _atom_sites.entry_id 3CZR _atom_sites.fract_transf_matrix[1][1] 0.009073 _atom_sites.fract_transf_matrix[1][2] 0.005238 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010477 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 1 1 NAP NAP . D 3 3CZ A 1 293 1 3CZ 3CZ . E 2 NAP B 1 2 2 NAP NAP . F 4 CPS B 1 1 1 CPS CPS . G 5 HOH A 1 294 294 HOH HOH . G 5 HOH A 2 295 295 HOH HOH . G 5 HOH A 3 296 296 HOH HOH . G 5 HOH A 4 297 297 HOH HOH . G 5 HOH A 5 298 298 HOH HOH . G 5 HOH A 6 299 299 HOH HOH . G 5 HOH A 7 300 300 HOH HOH . G 5 HOH A 8 301 301 HOH HOH . G 5 HOH A 9 302 302 HOH HOH . G 5 HOH A 10 303 303 HOH HOH . G 5 HOH A 11 304 304 HOH HOH . G 5 HOH A 12 305 305 HOH HOH . G 5 HOH A 13 306 306 HOH HOH . G 5 HOH A 14 307 307 HOH HOH . G 5 HOH A 15 308 308 HOH HOH . G 5 HOH A 16 309 309 HOH HOH . G 5 HOH A 17 310 310 HOH HOH . G 5 HOH A 18 311 311 HOH HOH . G 5 HOH A 19 312 312 HOH HOH . G 5 HOH A 20 313 313 HOH HOH . G 5 HOH A 21 314 314 HOH HOH . G 5 HOH A 22 315 315 HOH HOH . G 5 HOH A 23 316 316 HOH HOH . G 5 HOH A 24 317 317 HOH HOH . G 5 HOH A 25 318 318 HOH HOH . G 5 HOH A 26 319 319 HOH HOH . G 5 HOH A 27 320 320 HOH HOH . G 5 HOH A 28 321 321 HOH HOH . G 5 HOH A 29 322 322 HOH HOH . G 5 HOH A 30 323 323 HOH HOH . G 5 HOH A 31 324 324 HOH HOH . G 5 HOH A 32 325 325 HOH HOH . G 5 HOH A 33 326 326 HOH HOH . G 5 HOH A 34 327 327 HOH HOH . G 5 HOH A 35 328 328 HOH HOH . G 5 HOH A 36 329 329 HOH HOH . G 5 HOH A 37 330 330 HOH HOH . G 5 HOH A 38 331 331 HOH HOH . G 5 HOH A 39 332 332 HOH HOH . G 5 HOH A 40 334 334 HOH HOH . G 5 HOH A 41 335 335 HOH HOH . G 5 HOH A 42 336 336 HOH HOH . G 5 HOH A 43 337 337 HOH HOH . G 5 HOH A 44 338 338 HOH HOH . G 5 HOH A 45 339 339 HOH HOH . G 5 HOH A 46 340 340 HOH HOH . G 5 HOH A 47 341 341 HOH HOH . G 5 HOH A 48 342 342 HOH HOH . G 5 HOH A 49 343 343 HOH HOH . G 5 HOH A 50 344 344 HOH HOH . G 5 HOH A 51 345 345 HOH HOH . G 5 HOH A 52 346 346 HOH HOH . G 5 HOH A 53 347 347 HOH HOH . G 5 HOH A 54 348 348 HOH HOH . G 5 HOH A 55 349 349 HOH HOH . G 5 HOH A 56 350 350 HOH HOH . G 5 HOH A 57 351 351 HOH HOH . G 5 HOH A 58 352 352 HOH HOH . G 5 HOH A 59 353 353 HOH HOH . G 5 HOH A 60 354 354 HOH HOH . G 5 HOH A 61 355 355 HOH HOH . G 5 HOH A 62 356 356 HOH HOH . G 5 HOH A 63 357 357 HOH HOH . G 5 HOH A 64 358 358 HOH HOH . G 5 HOH A 65 359 359 HOH HOH . G 5 HOH A 66 360 360 HOH HOH . G 5 HOH A 67 361 361 HOH HOH . G 5 HOH A 68 362 362 HOH HOH . G 5 HOH A 69 363 363 HOH HOH . G 5 HOH A 70 364 364 HOH HOH . G 5 HOH A 71 365 365 HOH HOH . G 5 HOH A 72 366 366 HOH HOH . G 5 HOH A 73 367 367 HOH HOH . G 5 HOH A 74 368 368 HOH HOH . G 5 HOH A 75 369 369 HOH HOH . G 5 HOH A 76 370 370 HOH HOH . G 5 HOH A 77 371 371 HOH HOH . G 5 HOH A 78 372 372 HOH HOH . G 5 HOH A 79 373 373 HOH HOH . G 5 HOH A 80 374 374 HOH HOH . G 5 HOH A 81 398 398 HOH HOH . H 5 HOH B 1 333 333 HOH HOH . H 5 HOH B 2 377 377 HOH HOH . H 5 HOH B 3 378 378 HOH HOH . H 5 HOH B 4 379 379 HOH HOH . H 5 HOH B 5 380 380 HOH HOH . H 5 HOH B 6 381 381 HOH HOH . H 5 HOH B 7 382 382 HOH HOH . H 5 HOH B 8 383 383 HOH HOH . H 5 HOH B 9 384 384 HOH HOH . H 5 HOH B 10 385 385 HOH HOH . H 5 HOH B 11 386 386 HOH HOH . H 5 HOH B 12 387 387 HOH HOH . H 5 HOH B 13 388 388 HOH HOH . H 5 HOH B 14 389 389 HOH HOH . H 5 HOH B 15 390 390 HOH HOH . H 5 HOH B 16 391 391 HOH HOH . H 5 HOH B 17 392 392 HOH HOH . H 5 HOH B 18 393 393 HOH HOH . H 5 HOH B 19 394 394 HOH HOH . H 5 HOH B 20 395 395 HOH HOH . H 5 HOH B 21 396 396 HOH HOH . H 5 HOH B 22 397 397 HOH HOH . H 5 HOH B 23 399 399 HOH HOH . H 5 HOH B 24 400 400 HOH HOH . H 5 HOH B 25 401 401 HOH HOH . H 5 HOH B 26 402 402 HOH HOH . H 5 HOH B 27 403 403 HOH HOH . H 5 HOH B 28 404 404 HOH HOH . H 5 HOH B 29 405 405 HOH HOH . H 5 HOH B 30 406 406 HOH HOH . H 5 HOH B 31 407 407 HOH HOH . H 5 HOH B 32 408 408 HOH HOH . H 5 HOH B 33 409 409 HOH HOH . H 5 HOH B 34 410 410 HOH HOH . H 5 HOH B 35 411 411 HOH HOH . H 5 HOH B 36 412 412 HOH HOH . H 5 HOH B 37 413 413 HOH HOH . H 5 HOH B 38 414 414 HOH HOH . H 5 HOH B 39 415 415 HOH HOH . H 5 HOH B 40 416 416 HOH HOH . H 5 HOH B 41 417 417 HOH HOH . H 5 HOH B 42 418 418 HOH HOH . H 5 HOH B 43 419 419 HOH HOH . H 5 HOH B 44 420 420 HOH HOH . H 5 HOH B 45 421 421 HOH HOH . H 5 HOH B 46 422 422 HOH HOH . H 5 HOH B 47 423 423 HOH HOH . H 5 HOH B 48 424 424 HOH HOH . H 5 HOH B 49 425 425 HOH HOH . H 5 HOH B 50 426 426 HOH HOH . H 5 HOH B 51 427 427 HOH HOH . H 5 HOH B 52 428 428 HOH HOH . H 5 HOH B 53 429 429 HOH HOH . H 5 HOH B 54 430 430 HOH HOH . H 5 HOH B 55 431 431 HOH HOH . H 5 HOH B 56 432 432 HOH HOH . H 5 HOH B 57 433 433 HOH HOH . H 5 HOH B 58 434 434 HOH HOH . H 5 HOH B 59 435 435 HOH HOH . H 5 HOH B 60 436 436 HOH HOH . H 5 HOH B 61 437 437 HOH HOH . H 5 HOH B 62 438 438 HOH HOH . H 5 HOH B 63 439 439 HOH HOH . H 5 HOH B 64 440 440 HOH HOH . H 5 HOH B 65 441 441 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 2 46.952 -30.406 50.422 1 52.98 ? PA NAP 1 A 1 HETATM 2 O O1A NAP . . . C 2 46.021 -30.123 51.542 1 53.58 ? O1A NAP 1 A 1 HETATM 3 O O2A NAP . . . C 2 48.049 -31.366 50.64 1 50.81 ? O2A NAP 1 A 1 HETATM 4 O O5B NAP . . . C 2 46.002 -30.775 49.167 1 55.69 ? O5B NAP 1 A 1 HETATM 5 C C5B NAP . . . C 2 46.585 -31.275 47.972 1 55.81 ? C5B NAP 1 A 1 HETATM 6 C C4B NAP . . . C 2 45.472 -31.748 47.035 1 55.97 ? C4B NAP 1 A 1 HETATM 7 O O4B NAP . . . C 2 46.078 -32.161 45.829 1 57.55 ? O4B NAP 1 A 1 HETATM 8 C C3B NAP . . . C 2 44.737 -32.981 47.546 1 55.91 ? C3B NAP 1 A 1 HETATM 9 O O3B NAP . . . C 2 43.366 -32.912 47.227 1 56.11 ? O3B NAP 1 A 1 HETATM 10 C C2B NAP . . . C 2 45.373 -34.143 46.815 1 55.02 ? C2B NAP 1 A 1 HETATM 11 O O2B NAP . . . C 2 44.491 -35.247 46.652 1 61.02 ? O2B NAP 1 A 1 HETATM 12 C C1B NAP . . . C 2 45.755 -33.495 45.501 1 52.86 ? C1B NAP 1 A 1 HETATM 13 N N9A NAP . . . C 2 46.875 -34.187 44.833 1 50.25 ? N9A NAP 1 A 1 HETATM 14 C C8A NAP . . . C 2 48.083 -34.602 45.347 1 48.59 ? C8A NAP 1 A 1 HETATM 15 N N7A NAP . . . C 2 48.784 -35.213 44.346 1 47.04 ? N7A NAP 1 A 1 HETATM 16 C C5A NAP . . . C 2 48.04 -35.18 43.212 1 45.01 ? C5A NAP 1 A 1 HETATM 17 C C6A NAP . . . C 2 48.261 -35.652 41.914 1 46.62 ? C6A NAP 1 A 1 HETATM 18 N N6A NAP . . . C 2 49.403 -36.281 41.564 1 45.55 ? N6A NAP 1 A 1 HETATM 19 N N1A NAP . . . C 2 47.275 -35.458 40.974 1 44.08 ? N1A NAP 1 A 1 HETATM 20 C C2A NAP . . . C 2 46.081 -34.83 41.289 1 46.16 ? C2A NAP 1 A 1 HETATM 21 N N3A NAP . . . C 2 45.88 -34.355 42.567 1 47.45 ? N3A NAP 1 A 1 HETATM 22 C C4A NAP . . . C 2 46.848 -34.539 43.503 1 46.79 ? C4A NAP 1 A 1 HETATM 23 O O3 NAP . . . C 2 47.711 -29.044 50.044 1 51.28 ? O3 NAP 1 A 1 HETATM 24 P PN NAP . . . C 2 47.412 -27.525 50.448 1 45.46 ? PN NAP 1 A 1 HETATM 25 O O1N NAP . . . C 2 45.973 -27.234 50.623 1 42.35 ? O1N NAP 1 A 1 HETATM 26 O O2N NAP . . . C 2 48.42 -27.245 51.477 1 45.02 ? O2N NAP 1 A 1 HETATM 27 O O5D NAP . . . C 2 47.906 -26.784 49.096 1 48.09 ? O5D NAP 1 A 1 HETATM 28 C C5D NAP . . . C 2 47.016 -26.221 48.139 1 47.46 ? C5D NAP 1 A 1 HETATM 29 C C4D NAP . . . C 2 47.76 -25.171 47.289 1 46.71 ? C4D NAP 1 A 1 HETATM 30 O O4D NAP . . . C 2 48.152 -24.092 48.134 1 45.39 ? O4D NAP 1 A 1 HETATM 31 C C3D NAP . . . C 2 49.038 -25.711 46.643 1 43.62 ? C3D NAP 1 A 1 HETATM 32 O O3D NAP . . . C 2 49.218 -25.265 45.308 1 43.74 ? O3D NAP 1 A 1 HETATM 33 C C2D NAP . . . C 2 50.136 -25.123 47.469 1 42.74 ? C2D NAP 1 A 1 HETATM 34 O O2D NAP . . . C 2 51.357 -24.979 46.76 1 42.89 ? O2D NAP 1 A 1 HETATM 35 C C1D NAP . . . C 2 49.5 -23.812 47.863 1 43.4 ? C1D NAP 1 A 1 HETATM 36 N N1N NAP . . . C 2 50.176 -23.385 49.066 1 45.99 ? N1N NAP 1 A 1 HETATM 37 C C2N NAP . . . C 2 49.887 -23.996 50.264 1 43.79 ? C2N NAP 1 A 1 HETATM 38 C C3N NAP . . . C 2 50.579 -23.569 51.382 1 42.55 ? C3N NAP 1 A 1 HETATM 39 C C7N NAP . . . C 2 50.327 -24.171 52.74 1 43.24 ? C7N NAP 1 A 1 HETATM 40 O O7N NAP . . . C 2 51.281 -23.874 53.719 1 43.02 ? O7N NAP 1 A 1 HETATM 41 N N7N NAP . . . C 2 49.263 -24.952 52.996 1 38.66 ? N7N NAP 1 A 1 HETATM 42 C C4N NAP . . . C 2 51.528 -22.561 51.267 1 44.52 ? C4N NAP 1 A 1 HETATM 43 C C5N NAP . . . C 2 51.819 -21.954 50.038 1 46.42 ? C5N NAP 1 A 1 HETATM 44 C C6N NAP . . . C 2 51.122 -22.4 48.928 1 45.43 ? C6N NAP 1 A 1 HETATM 45 P P2B NAP . . . C 2 45.079 -36.756 46.472 1 60.86 ? P2B NAP 1 A 1 HETATM 46 O O1X NAP . . . C 2 43.964 -37.682 46.863 1 63.38 ? O1X NAP 1 A 1 HETATM 47 O O2X NAP . . . C 2 45.489 -37.018 45.054 1 62.56 ? O2X NAP 1 A 1 HETATM 48 O O3X NAP . . . C 2 46.335 -36.956 47.273 1 59.18 ? O3X NAP 1 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #