data_3D0H # _model_server_result.job_id PDF4R3irZ5VaTtncuHOVCA _model_server_result.datetime_utc '2024-11-21 09:17:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d0h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":91}' # _entry.id 3D0H # _exptl.entry_id 3D0H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.89 _cell.angle_gamma 90 _cell.entry_id 3D0H _cell.length_a 80.352 _cell.length_b 119.841 _cell.length_c 109.42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D0H _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 1 A,C,E,F,G,M 2 1 B,D,H,I,J,K,L,N,O,P 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 115 A CYS 133 1_555 A SG CYS 123 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 326 A CYS 344 1_555 A SG CYS 343 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 512 A CYS 530 1_555 A SG CYS 524 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 B SG CYS 115 B CYS 133 1_555 B SG CYS 123 B CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 B SG CYS 326 B CYS 344 1_555 B SG CYS 343 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 B SG CYS 512 B CYS 530 1_555 B SG CYS 524 B CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf7 C SG CYS 43 E CYS 366 1_555 C SG CYS 96 E CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 C SG CYS 144 E CYS 467 1_555 C SG CYS 151 E CYS 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf9 D SG CYS 43 F CYS 366 1_555 D SG CYS 96 F CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf10 D SG CYS 144 F CYS 467 1_555 D SG CYS 151 F CYS 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3D0H _atom_sites.fract_transf_matrix[1][1] 0.012445 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001284 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009188 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NDG A 1 616 616 NDG NDG . F 4 ZN A 1 901 901 ZN ZN . G 5 CL A 1 902 902 CL CL . H 3 NDG B 1 616 616 NDG NDG . I 3 NDG B 1 617 617 NDG NDG . J 3 NDG B 1 618 618 NDG NDG . K 4 ZN B 1 901 901 ZN ZN . L 5 CL B 1 902 902 CL CL . M 6 NAG E 1 91 91 NAG NAG . N 3 NDG F 1 91 91 NDG NDG . O 7 HOH B 1 903 903 HOH HOH . O 7 HOH B 2 904 904 HOH HOH . O 7 HOH B 3 905 905 HOH HOH . O 7 HOH B 4 906 906 HOH HOH . O 7 HOH B 5 907 907 HOH HOH . O 7 HOH B 6 908 908 HOH HOH . O 7 HOH B 7 909 909 HOH HOH . O 7 HOH B 8 910 910 HOH HOH . O 7 HOH B 9 911 911 HOH HOH . O 7 HOH B 10 912 912 HOH HOH . O 7 HOH B 11 913 913 HOH HOH . O 7 HOH B 12 914 914 HOH HOH . O 7 HOH B 13 915 915 HOH HOH . O 7 HOH B 14 916 916 HOH HOH . O 7 HOH B 15 917 917 HOH HOH . O 7 HOH B 16 918 918 HOH HOH . O 7 HOH B 17 919 919 HOH HOH . O 7 HOH B 18 920 920 HOH HOH . O 7 HOH B 19 921 921 HOH HOH . O 7 HOH B 20 922 922 HOH HOH . O 7 HOH B 21 923 923 HOH HOH . P 7 HOH F 1 1 1 HOH HOH . P 7 HOH F 2 11 11 HOH HOH . P 7 HOH F 3 12 12 HOH HOH . P 7 HOH F 4 24 24 HOH HOH . P 7 HOH F 5 25 25 HOH HOH . P 7 HOH F 6 26 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . M 6 27.741 -12.927 104.795 1 148.51 ? C1 NAG 91 E 1 HETATM 2 C C2 NAG . . . M 6 26.482 -12.904 105.681 1 148.76 ? C2 NAG 91 E 1 HETATM 3 C C3 NAG . . . M 6 25.365 -12.033 105.077 1 148.71 ? C3 NAG 91 E 1 HETATM 4 C C4 NAG . . . M 6 25.941 -10.736 104.495 1 148.57 ? C4 NAG 91 E 1 HETATM 5 C C5 NAG . . . M 6 27.002 -11.015 103.416 1 148.37 ? C5 NAG 91 E 1 HETATM 6 C C6 NAG . . . M 6 28.158 -10 103.386 1 147.92 ? C6 NAG 91 E 1 HETATM 7 C C7 NAG . . . M 6 26.541 -15.051 106.911 1 148.43 ? C7 NAG 91 E 1 HETATM 8 C C8 NAG . . . M 6 25.676 -15.274 108.128 1 148.17 ? C8 NAG 91 E 1 HETATM 9 N N2 NAG . . . M 6 26.03 -14.271 105.941 1 148.71 ? N2 NAG 91 E 1 HETATM 10 O O1 NAG . . . M 6 28.832 -12.306 105.467 1 148.1 ? O1 NAG 91 E 1 HETATM 11 O O3 NAG . . . M 6 24.379 -11.724 106.047 1 148.5 ? O3 NAG 91 E 1 HETATM 12 O O4 NAG . . . M 6 24.905 -9.942 103.958 1 148.33 ? O4 NAG 91 E 1 HETATM 13 O O5 NAG . . . M 6 27.515 -12.354 103.499 1 148.41 ? O5 NAG 91 E 1 HETATM 14 O O6 NAG . . . M 6 28.708 -9.747 104.718 1 147.38 ? O6 NAG 91 E 1 HETATM 15 O O7 NAG . . . M 6 27.659 -15.582 106.838 1 148.06 ? O7 NAG 91 E 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #