data_3D0L
#
_model_server_result.job_id            6KDvjJ4Jo7qWtAl2nKluEg 
_model_server_result.datetime_utc      '2025-03-05 21:12:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3d0l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":3731}' 
#
_entry.id    3D0L 
#
_exptl.entry_id    3D0L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3D0L 
_cell.length_a            63.3 
_cell.length_b            76.7 
_cell.length_c            94 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3D0L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 A SG CYS 134 A CYS 134 1_555 A SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 97 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 B SG CYS 159 B CYS 140 1_555 B SG CYS 215 B CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 150 n n 
C1 C2 GOL sing 151 n n 
C1 H11 GOL sing 152 n n 
C1 H12 GOL sing 153 n n 
O1 HO1 GOL sing 154 n n 
C2 O2 GOL sing 155 n n 
C2 C3 GOL sing 156 n n 
C2 H2 GOL sing 157 n n 
O2 HO2 GOL sing 158 n n 
C3 O3 GOL sing 159 n n 
C3 H31 GOL sing 160 n n 
C3 H32 GOL sing 161 n n 
O3 HO3 GOL sing 162 n n 
#
_atom_sites.entry_id                     3D0L 
_atom_sites.fract_transf_matrix[1][1]    0.015798 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013038 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010638 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 SO4 A 1 6577 6577 SO4 SO4 . 
E 4 SO4 B 1 6576 6576 SO4 SO4 . 
F 5 GOL B 1 3731 3731 GOL GOL . 
G 6 HOH A 1 6578 4 HOH HOH . 
G 6 HOH A 2 6579 5 HOH HOH . 
G 6 HOH A 3 6580 8 HOH HOH . 
G 6 HOH A 4 6581 9 HOH HOH . 
G 6 HOH A 5 6582 11 HOH HOH . 
G 6 HOH A 6 6583 12 HOH HOH . 
G 6 HOH A 7 6584 13 HOH HOH . 
G 6 HOH A 8 6585 14 HOH HOH . 
G 6 HOH A 9 6586 15 HOH HOH . 
G 6 HOH A 10 6587 16 HOH HOH . 
G 6 HOH A 11 6588 17 HOH HOH . 
G 6 HOH A 12 6589 18 HOH HOH . 
G 6 HOH A 13 6590 20 HOH HOH . 
G 6 HOH A 14 6591 25 HOH HOH . 
G 6 HOH A 15 6592 26 HOH HOH . 
G 6 HOH A 16 6593 27 HOH HOH . 
G 6 HOH A 17 6594 29 HOH HOH . 
G 6 HOH A 18 6595 30 HOH HOH . 
G 6 HOH A 19 6596 32 HOH HOH . 
G 6 HOH A 20 6597 34 HOH HOH . 
G 6 HOH A 21 6598 35 HOH HOH . 
G 6 HOH A 22 6599 36 HOH HOH . 
G 6 HOH A 23 6600 37 HOH HOH . 
G 6 HOH A 24 6601 38 HOH HOH . 
G 6 HOH A 25 6602 39 HOH HOH . 
G 6 HOH A 26 6603 41 HOH HOH . 
G 6 HOH A 27 6604 42 HOH HOH . 
G 6 HOH A 28 6605 43 HOH HOH . 
G 6 HOH A 29 6606 45 HOH HOH . 
G 6 HOH A 30 6607 49 HOH HOH . 
G 6 HOH A 31 6608 55 HOH HOH . 
G 6 HOH A 32 6609 56 HOH HOH . 
G 6 HOH A 33 6610 57 HOH HOH . 
G 6 HOH A 34 6611 59 HOH HOH . 
G 6 HOH A 35 6612 60 HOH HOH . 
G 6 HOH A 36 6613 63 HOH HOH . 
G 6 HOH A 37 6614 64 HOH HOH . 
G 6 HOH A 38 6615 66 HOH HOH . 
G 6 HOH A 39 6616 67 HOH HOH . 
G 6 HOH A 40 6617 68 HOH HOH . 
G 6 HOH A 41 6618 72 HOH HOH . 
G 6 HOH A 42 6619 75 HOH HOH . 
G 6 HOH A 43 6620 102 HOH HOH . 
G 6 HOH A 44 6621 103 HOH HOH . 
G 6 HOH A 45 6622 108 HOH HOH . 
G 6 HOH A 46 6623 111 HOH HOH . 
G 6 HOH A 47 6624 112 HOH HOH . 
G 6 HOH A 48 6625 113 HOH HOH . 
G 6 HOH A 49 6626 115 HOH HOH . 
G 6 HOH A 50 6627 116 HOH HOH . 
G 6 HOH A 51 6628 118 HOH HOH . 
G 6 HOH A 52 6629 122 HOH HOH . 
G 6 HOH A 53 6630 125 HOH HOH . 
G 6 HOH A 54 6631 127 HOH HOH . 
G 6 HOH A 55 6632 130 HOH HOH . 
G 6 HOH A 56 6633 134 HOH HOH . 
G 6 HOH A 57 6634 139 HOH HOH . 
G 6 HOH A 58 6635 141 HOH HOH . 
G 6 HOH A 59 6636 142 HOH HOH . 
G 6 HOH A 60 6637 145 HOH HOH . 
G 6 HOH A 61 6638 149 HOH HOH . 
G 6 HOH A 62 6639 151 HOH HOH . 
G 6 HOH A 63 6640 154 HOH HOH . 
G 6 HOH A 64 6641 155 HOH HOH . 
G 6 HOH A 65 6642 157 HOH HOH . 
G 6 HOH A 66 6643 159 HOH HOH . 
G 6 HOH A 67 6644 160 HOH HOH . 
G 6 HOH A 68 6645 162 HOH HOH . 
G 6 HOH A 69 6646 163 HOH HOH . 
G 6 HOH A 70 6647 164 HOH HOH . 
G 6 HOH A 71 6648 166 HOH HOH . 
G 6 HOH A 72 6649 173 HOH HOH . 
G 6 HOH A 73 6650 175 HOH HOH . 
G 6 HOH A 74 6651 177 HOH HOH . 
G 6 HOH A 75 6652 181 HOH HOH . 
G 6 HOH A 76 6653 182 HOH HOH . 
G 6 HOH A 77 6654 184 HOH HOH . 
G 6 HOH A 78 6655 188 HOH HOH . 
G 6 HOH A 79 6656 191 HOH HOH . 
G 6 HOH A 80 6657 195 HOH HOH . 
G 6 HOH A 81 6658 199 HOH HOH . 
G 6 HOH A 82 6659 200 HOH HOH . 
G 6 HOH A 83 6660 201 HOH HOH . 
G 6 HOH A 84 6661 204 HOH HOH . 
G 6 HOH A 85 6662 205 HOH HOH . 
G 6 HOH A 86 6663 219 HOH HOH . 
G 6 HOH A 87 6664 225 HOH HOH . 
G 6 HOH A 88 6665 226 HOH HOH . 
G 6 HOH A 89 6666 228 HOH HOH . 
G 6 HOH A 90 6667 250 HOH HOH . 
G 6 HOH A 91 6668 254 HOH HOH . 
G 6 HOH A 92 6669 260 HOH HOH . 
G 6 HOH A 93 6670 269 HOH HOH . 
G 6 HOH A 94 6671 270 HOH HOH . 
G 6 HOH A 95 6672 276 HOH HOH . 
G 6 HOH A 96 6673 280 HOH HOH . 
G 6 HOH A 97 6674 287 HOH HOH . 
G 6 HOH A 98 6675 290 HOH HOH . 
G 6 HOH A 99 6676 293 HOH HOH . 
G 6 HOH A 100 6677 309 HOH HOH . 
G 6 HOH A 101 6678 76 HOH HOH . 
H 6 HOH B 1 6577 2 HOH HOH . 
H 6 HOH B 2 6578 6 HOH HOH . 
H 6 HOH B 3 6579 19 HOH HOH . 
H 6 HOH B 4 6580 21 HOH HOH . 
H 6 HOH B 5 6581 22 HOH HOH . 
H 6 HOH B 6 6582 28 HOH HOH . 
H 6 HOH B 7 6583 31 HOH HOH . 
H 6 HOH B 8 6584 33 HOH HOH . 
H 6 HOH B 9 6585 40 HOH HOH . 
H 6 HOH B 10 6586 44 HOH HOH . 
H 6 HOH B 11 6587 47 HOH HOH . 
H 6 HOH B 12 6588 50 HOH HOH . 
H 6 HOH B 13 6589 53 HOH HOH . 
H 6 HOH B 14 6590 54 HOH HOH . 
H 6 HOH B 15 6591 58 HOH HOH . 
H 6 HOH B 16 6592 61 HOH HOH . 
H 6 HOH B 17 6593 65 HOH HOH . 
H 6 HOH B 18 6594 69 HOH HOH . 
H 6 HOH B 19 6595 71 HOH HOH . 
H 6 HOH B 20 6596 74 HOH HOH . 
H 6 HOH B 21 6598 79 HOH HOH . 
H 6 HOH B 22 6599 80 HOH HOH . 
H 6 HOH B 23 6600 82 HOH HOH . 
H 6 HOH B 24 6601 83 HOH HOH . 
H 6 HOH B 25 6602 104 HOH HOH . 
H 6 HOH B 26 6603 106 HOH HOH . 
H 6 HOH B 27 6604 107 HOH HOH . 
H 6 HOH B 28 6605 109 HOH HOH . 
H 6 HOH B 29 6606 114 HOH HOH . 
H 6 HOH B 30 6607 117 HOH HOH . 
H 6 HOH B 31 6608 120 HOH HOH . 
H 6 HOH B 32 6609 124 HOH HOH . 
H 6 HOH B 33 6610 126 HOH HOH . 
H 6 HOH B 34 6611 129 HOH HOH . 
H 6 HOH B 35 6612 131 HOH HOH . 
H 6 HOH B 36 6613 136 HOH HOH . 
H 6 HOH B 37 6614 138 HOH HOH . 
H 6 HOH B 38 6615 144 HOH HOH . 
H 6 HOH B 39 6616 147 HOH HOH . 
H 6 HOH B 40 6617 150 HOH HOH . 
H 6 HOH B 41 6618 156 HOH HOH . 
H 6 HOH B 42 6619 158 HOH HOH . 
H 6 HOH B 43 6620 161 HOH HOH . 
H 6 HOH B 44 6621 171 HOH HOH . 
H 6 HOH B 45 6622 176 HOH HOH . 
H 6 HOH B 46 6623 180 HOH HOH . 
H 6 HOH B 47 6624 185 HOH HOH . 
H 6 HOH B 48 6625 186 HOH HOH . 
H 6 HOH B 49 6626 187 HOH HOH . 
H 6 HOH B 50 6627 189 HOH HOH . 
H 6 HOH B 51 6628 190 HOH HOH . 
H 6 HOH B 52 6629 193 HOH HOH . 
H 6 HOH B 53 6630 197 HOH HOH . 
H 6 HOH B 54 6631 198 HOH HOH . 
H 6 HOH B 55 6632 217 HOH HOH . 
H 6 HOH B 56 6633 221 HOH HOH . 
H 6 HOH B 57 6634 223 HOH HOH . 
H 6 HOH B 58 6635 231 HOH HOH . 
H 6 HOH B 59 6636 232 HOH HOH . 
H 6 HOH B 60 6637 240 HOH HOH . 
H 6 HOH B 61 6638 245 HOH HOH . 
H 6 HOH B 62 6639 247 HOH HOH . 
H 6 HOH B 63 6640 253 HOH HOH . 
H 6 HOH B 64 6641 255 HOH HOH . 
H 6 HOH B 65 6642 258 HOH HOH . 
H 6 HOH B 66 6643 262 HOH HOH . 
H 6 HOH B 67 6644 263 HOH HOH . 
H 6 HOH B 68 6645 281 HOH HOH . 
H 6 HOH B 69 6646 282 HOH HOH . 
H 6 HOH B 70 6647 295 HOH HOH . 
H 6 HOH B 71 6648 300 HOH HOH . 
H 6 HOH B 72 6649 301 HOH HOH . 
H 6 HOH B 73 6650 303 HOH HOH . 
H 6 HOH B 74 6651 305 HOH HOH . 
H 6 HOH B 75 6652 306 HOH HOH . 
H 6 HOH B 76 6667 246 HOH HOH . 
H 6 HOH B 77 6677 291 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 5 22.108 16.178 39.216 1 33.52 ? C1 GOL 3731 B 1 
HETATM 2 O O1 GOL . . . F 5 21.446 16.42 40.439 1 34.37 ? O1 GOL 3731 B 1 
HETATM 3 C C2 GOL . . . F 5 22.489 17.481 38.503 1 33.65 ? C2 GOL 3731 B 1 
HETATM 4 O O2 GOL . . . F 5 23.338 18.299 39.339 1 32.81 ? O2 GOL 3731 B 1 
HETATM 5 C C3 GOL . . . F 5 23.2 17.085 37.205 1 32.69 ? C3 GOL 3731 B 1 
HETATM 6 O O3 GOL . . . F 5 23.601 18.229 36.465 1 32.4 ? O3 GOL 3731 B 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#