data_3D0P # _model_server_result.job_id 2EfHVBqI7R3-Kj-FFQTp-A _model_server_result.datetime_utc '2025-01-11 00:12:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d0p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 3D0P # _exptl.entry_id 3D0P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 122.31 _cell.angle_gamma 90 _cell.entry_id 3D0P _cell.length_a 98.397 _cell.length_b 66.66 _cell.length_c 76.926 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D0P _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G 1 1,2 C,D,E,H,I 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 57.280063 0 65.015437 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E NA NA . C NA 1 1_555 H O HOH . C HOH 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc2 E NA NA . C NA 1 1_555 H O HOH . C HOH 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc3 E NA NA . C NA 1 1_555 H O HOH . C HOH 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? hydrog WATSON-CRICK hydrog1 D N3 DC 1 D DC 1 1_555 D N1 DG 12 D DG 12 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 D N4 DC 1 D DC 1 1_555 D O6 DG 12 D DG 12 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 D O2 DC 1 D DC 1 1_555 D N2 DG 12 D DG 12 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 D N1 DG 2 D DG 2 1_555 D N3 DC 11 D DC 11 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 D N2 DG 2 D DG 2 1_555 D O2 DC 11 D DC 11 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 D O6 DG 2 D DG 2 1_555 D N4 DC 11 D DC 11 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 D N3 DC 3 D DC 3 1_555 D N1 DG 10 D DG 10 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 D N4 DC 3 D DC 3 1_555 D O6 DG 10 D DG 10 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 D O2 DC 3 D DC 3 1_555 D N2 DG 10 D DG 10 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 D N1 DG 4 D DG 4 1_555 D N3 DC 9 D DC 9 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 D N2 DG 4 D DG 4 1_555 D O2 DC 9 D DC 9 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 D O6 DG 4 D DG 4 1_555 D N4 DC 9 D DC 9 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 D N1 DA 5 D DA 5 1_555 D N3 DT 8 D DT 8 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 D N6 DA 5 D DA 5 1_555 D O4 DT 8 D DT 8 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 D N1 DA 6 D DA 6 1_555 D N3 DT 7 D DT 7 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 D N6 DA 6 D DA 6 1_555 D O4 DT 7 D DT 7 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 D N3 DT 7 D DT 7 1_555 D N1 DA 6 D DA 6 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 D O4 DT 7 D DT 7 1_555 D N6 DA 6 D DA 6 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 D N3 DT 8 D DT 8 1_555 D N1 DA 5 D DA 5 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 D O4 DT 8 D DT 8 1_555 D N6 DA 5 D DA 5 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 D N3 DC 9 D DC 9 1_555 D N1 DG 4 D DG 4 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 D N4 DC 9 D DC 9 1_555 D O6 DG 4 D DG 4 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 D O2 DC 9 D DC 9 1_555 D N2 DG 4 D DG 4 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 D N1 DG 10 D DG 10 1_555 D N3 DC 3 D DC 3 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 D N2 DG 10 D DG 10 1_555 D O2 DC 3 D DC 3 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 D O6 DG 10 D DG 10 1_555 D N4 DC 3 D DC 3 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 D N3 DC 11 D DC 11 1_555 D N1 DG 2 D DG 2 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 D N4 DC 11 D DC 11 1_555 D O6 DG 2 D DG 2 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 D O2 DC 11 D DC 11 1_555 D N2 DG 2 D DG 2 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 D N1 DG 12 D DG 12 1_555 D N3 DC 1 D DC 1 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 D N2 DG 12 D DG 12 1_555 D O2 DC 1 D DC 1 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 D O6 DG 12 D DG 12 1_555 D N4 DC 1 D DC 1 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3D0P _atom_sites.fract_transf_matrix[1][1] 0.010163 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006427 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015002 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015381 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NA C 1 1 1 NA NA . F 4 HOH A 1 195 195 HOH HOH . F 4 HOH A 2 196 196 HOH HOH . F 4 HOH A 3 197 197 HOH HOH . F 4 HOH A 4 198 198 HOH HOH . F 4 HOH A 5 199 199 HOH HOH . F 4 HOH A 6 200 200 HOH HOH . F 4 HOH A 7 201 201 HOH HOH . F 4 HOH A 8 202 202 HOH HOH . F 4 HOH A 9 203 203 HOH HOH . F 4 HOH A 10 204 204 HOH HOH . F 4 HOH A 11 205 205 HOH HOH . F 4 HOH A 12 206 206 HOH HOH . F 4 HOH A 13 207 207 HOH HOH . F 4 HOH A 14 208 208 HOH HOH . F 4 HOH A 15 209 209 HOH HOH . F 4 HOH A 16 210 210 HOH HOH . F 4 HOH A 17 211 211 HOH HOH . F 4 HOH A 18 212 212 HOH HOH . F 4 HOH A 19 213 213 HOH HOH . F 4 HOH A 20 214 214 HOH HOH . F 4 HOH A 21 215 215 HOH HOH . F 4 HOH A 22 216 216 HOH HOH . F 4 HOH A 23 217 217 HOH HOH . F 4 HOH A 24 218 218 HOH HOH . F 4 HOH A 25 219 219 HOH HOH . F 4 HOH A 26 220 220 HOH HOH . F 4 HOH A 27 221 221 HOH HOH . F 4 HOH A 28 222 222 HOH HOH . F 4 HOH A 29 223 223 HOH HOH . F 4 HOH A 30 224 224 HOH HOH . F 4 HOH A 31 225 225 HOH HOH . F 4 HOH A 32 226 226 HOH HOH . F 4 HOH A 33 227 227 HOH HOH . F 4 HOH A 34 228 228 HOH HOH . F 4 HOH A 35 229 229 HOH HOH . F 4 HOH A 36 230 230 HOH HOH . F 4 HOH A 37 231 231 HOH HOH . F 4 HOH A 38 232 232 HOH HOH . F 4 HOH A 39 233 233 HOH HOH . F 4 HOH A 40 234 234 HOH HOH . F 4 HOH A 41 235 235 HOH HOH . F 4 HOH A 42 236 236 HOH HOH . F 4 HOH A 43 237 237 HOH HOH . F 4 HOH A 44 238 238 HOH HOH . F 4 HOH A 45 239 239 HOH HOH . F 4 HOH A 46 240 240 HOH HOH . F 4 HOH A 47 241 241 HOH HOH . F 4 HOH A 48 242 242 HOH HOH . F 4 HOH A 49 243 243 HOH HOH . F 4 HOH A 50 244 244 HOH HOH . F 4 HOH A 51 245 245 HOH HOH . F 4 HOH A 52 246 246 HOH HOH . F 4 HOH A 53 247 247 HOH HOH . F 4 HOH A 54 248 248 HOH HOH . F 4 HOH A 55 249 249 HOH HOH . F 4 HOH A 56 250 250 HOH HOH . F 4 HOH A 57 251 251 HOH HOH . F 4 HOH A 58 252 252 HOH HOH . F 4 HOH A 59 254 254 HOH HOH . G 4 HOH B 1 17 17 HOH HOH . G 4 HOH B 2 25 25 HOH HOH . G 4 HOH B 3 41 41 HOH HOH . G 4 HOH B 4 62 62 HOH HOH . G 4 HOH B 5 72 72 HOH HOH . G 4 HOH B 6 73 73 HOH HOH . G 4 HOH B 7 74 74 HOH HOH . G 4 HOH B 8 77 77 HOH HOH . G 4 HOH B 9 79 79 HOH HOH . G 4 HOH B 10 85 85 HOH HOH . G 4 HOH B 11 89 89 HOH HOH . G 4 HOH B 12 95 95 HOH HOH . G 4 HOH B 13 100 100 HOH HOH . G 4 HOH B 14 101 101 HOH HOH . G 4 HOH B 15 109 109 HOH HOH . G 4 HOH B 16 116 116 HOH HOH . G 4 HOH B 17 123 123 HOH HOH . G 4 HOH B 18 124 124 HOH HOH . G 4 HOH B 19 125 125 HOH HOH . G 4 HOH B 20 136 136 HOH HOH . G 4 HOH B 21 137 137 HOH HOH . G 4 HOH B 22 142 142 HOH HOH . G 4 HOH B 23 144 144 HOH HOH . G 4 HOH B 24 249 249 HOH HOH . G 4 HOH B 25 253 253 HOH HOH . H 4 HOH C 1 233 233 HOH HOH . H 4 HOH C 2 235 235 HOH HOH . H 4 HOH C 3 236 236 HOH HOH . H 4 HOH C 4 237 237 HOH HOH . H 4 HOH C 5 238 238 HOH HOH . H 4 HOH C 6 239 239 HOH HOH . H 4 HOH C 7 240 240 HOH HOH . H 4 HOH C 8 241 241 HOH HOH . H 4 HOH C 9 242 242 HOH HOH . H 4 HOH C 10 243 243 HOH HOH . H 4 HOH C 11 244 244 HOH HOH . H 4 HOH C 12 245 245 HOH HOH . H 4 HOH C 13 246 246 HOH HOH . H 4 HOH C 14 247 247 HOH HOH . H 4 HOH C 15 248 248 HOH HOH . H 4 HOH C 16 249 249 HOH HOH . H 4 HOH C 17 250 250 HOH HOH . H 4 HOH C 18 251 251 HOH HOH . H 4 HOH C 19 252 252 HOH HOH . H 4 HOH C 20 253 253 HOH HOH . H 4 HOH C 21 254 254 HOH HOH . H 4 HOH C 22 255 255 HOH HOH . H 4 HOH C 23 256 256 HOH HOH . H 4 HOH C 24 257 257 HOH HOH . H 4 HOH C 25 258 258 HOH HOH . H 4 HOH C 26 259 259 HOH HOH . H 4 HOH C 27 260 260 HOH HOH . H 4 HOH C 28 261 261 HOH HOH . H 4 HOH C 29 262 262 HOH HOH . H 4 HOH C 30 263 263 HOH HOH . H 4 HOH C 31 264 264 HOH HOH . H 4 HOH C 32 265 265 HOH HOH . H 4 HOH C 33 266 266 HOH HOH . H 4 HOH C 34 267 267 HOH HOH . H 4 HOH C 35 268 268 HOH HOH . H 4 HOH C 36 269 269 HOH HOH . H 4 HOH C 37 270 270 HOH HOH . H 4 HOH C 38 271 271 HOH HOH . H 4 HOH C 39 272 272 HOH HOH . H 4 HOH C 40 273 273 HOH HOH . H 4 HOH C 41 274 274 HOH HOH . H 4 HOH C 42 275 275 HOH HOH . H 4 HOH C 43 276 276 HOH HOH . H 4 HOH C 44 277 277 HOH HOH . H 4 HOH C 45 278 278 HOH HOH . H 4 HOH C 46 279 279 HOH HOH . H 4 HOH C 47 280 280 HOH HOH . H 4 HOH C 48 281 281 HOH HOH . H 4 HOH C 49 282 282 HOH HOH . H 4 HOH C 50 283 283 HOH HOH . H 4 HOH C 51 284 284 HOH HOH . H 4 HOH C 52 285 285 HOH HOH . H 4 HOH C 53 286 286 HOH HOH . H 4 HOH C 54 287 287 HOH HOH . H 4 HOH C 55 288 288 HOH HOH . H 4 HOH C 56 289 289 HOH HOH . H 4 HOH C 57 290 290 HOH HOH . H 4 HOH C 58 291 291 HOH HOH . H 4 HOH C 59 292 292 HOH HOH . H 4 HOH C 60 293 293 HOH HOH . H 4 HOH C 61 294 294 HOH HOH . H 4 HOH C 62 295 295 HOH HOH . H 4 HOH C 63 296 296 HOH HOH . I 4 HOH D 1 15 15 HOH HOH . I 4 HOH D 2 55 55 HOH HOH . I 4 HOH D 3 59 59 HOH HOH . I 4 HOH D 4 71 71 HOH HOH . I 4 HOH D 5 78 78 HOH HOH . I 4 HOH D 6 80 80 HOH HOH . I 4 HOH D 7 83 83 HOH HOH . I 4 HOH D 8 87 87 HOH HOH . I 4 HOH D 9 90 90 HOH HOH . I 4 HOH D 10 91 91 HOH HOH . I 4 HOH D 11 110 110 HOH HOH . I 4 HOH D 12 127 127 HOH HOH . I 4 HOH D 13 165 165 HOH HOH . I 4 HOH D 14 166 166 HOH HOH . I 4 HOH D 15 167 167 HOH HOH . I 4 HOH D 16 172 172 HOH HOH . I 4 HOH D 17 173 173 HOH HOH . I 4 HOH D 18 248 248 HOH HOH . I 4 HOH D 19 297 297 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 51.84 _atom_site.Cartn_y -5.972 _atom_site.Cartn_z 35.147 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.23 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 442 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 1 #