data_3D0Y # _model_server_result.job_id '_iifTrIuQWCtFEGK5O6w-A' _model_server_result.datetime_utc '2024-10-18 16:30:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d0y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":93}' # _entry.id 3D0Y # _exptl.entry_id 3D0Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.12 _cell.angle_gamma 90 _cell.entry_id 3D0Y _cell.length_a 34.89 _cell.length_b 58.15 _cell.length_c 47.66 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D0Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C FME 1 A FME 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? metalc ? metalc1 A NE2 HIS 16 A HIS 15 1_555 E ZN ZN . A ZN 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc2 A O SER 19 A SER 18 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc3 A O GLU 22 A GLU 21 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc4 A O ASP 24 A ASP 23 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc5 A NE2 HIS 26 A HIS 25 1_555 E ZN ZN . A ZN 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc6 A O LYS 27 A LYS 26 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc7 A OE1 GLU 32 A GLU 31 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc8 A OE2 GLU 32 A GLU 31 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc9 A OD1 ASP 62 A ASP 61 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc10 A OD2 ASP 64 A ASP 63 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc11 A OD1 ASP 66 A ASP 65 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc12 A O GLU 68 A GLU 67 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc13 A OE1 GLU 73 A GLU 72 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc14 A OE2 GLU 73 A GLU 72 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc15 A NE2 HIS 86 A HIS 85 1_555 F ZN ZN . A ZN 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc16 A OE1 GLU 90 A GLU 89 1_555 F ZN ZN . A ZN 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc17 C CA CA . A CA 92 1_555 J O HOH . A HOH 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc18 E ZN ZN . A ZN 94 1_555 B NE2 HIS 86 B HIS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc19 E ZN ZN . A ZN 94 1_555 B OE1 GLU 90 B GLU 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc20 F ZN ZN . A ZN 95 1_555 B NE2 HIS 16 B HIS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc21 F ZN ZN . A ZN 95 1_555 B NE2 HIS 26 B HIS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc22 B O SER 19 B SER 18 1_555 G CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc23 B O GLU 22 B GLU 21 1_555 G CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc24 B O ASP 24 B ASP 23 1_555 G CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc25 B O LYS 27 B LYS 26 1_555 G CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc26 B OE1 GLU 32 B GLU 31 1_555 G CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc27 B OE2 GLU 32 B GLU 31 1_555 G CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc28 B OD1 ASP 62 B ASP 61 1_555 H CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.863 ? metalc ? metalc29 B OD1 ASP 64 B ASP 63 1_555 H CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc30 B OD1 ASP 66 B ASP 65 1_555 H CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc31 B O GLU 68 B GLU 67 1_555 H CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc32 B OE1 GLU 73 B GLU 72 1_555 H CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc33 B OE2 GLU 73 B GLU 72 1_555 H CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc34 G CA CA . B CA 92 1_555 K O HOH . B HOH 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3D0Y _atom_sites.fract_transf_matrix[1][1] 0.028662 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.011071 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017197 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022493 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 92 1 CA CA . D 3 CA A 1 93 2 CA CA . E 4 ZN A 1 94 5 ZN ZN . F 4 ZN A 1 95 6 ZN ZN . G 3 CA B 1 92 3 CA CA . H 3 CA B 1 93 4 CA CA . I 5 PG4 B 1 94 1 PG4 PG4 . J 6 HOH A 1 96 2 HOH HOH . J 6 HOH A 2 97 6 HOH HOH . J 6 HOH A 3 98 7 HOH HOH . J 6 HOH A 4 99 10 HOH HOH . J 6 HOH A 5 100 12 HOH HOH . J 6 HOH A 6 101 13 HOH HOH . J 6 HOH A 7 102 15 HOH HOH . J 6 HOH A 8 103 16 HOH HOH . J 6 HOH A 9 104 19 HOH HOH . J 6 HOH A 10 105 22 HOH HOH . J 6 HOH A 11 106 28 HOH HOH . J 6 HOH A 12 107 29 HOH HOH . J 6 HOH A 13 108 31 HOH HOH . J 6 HOH A 14 109 32 HOH HOH . J 6 HOH A 15 110 34 HOH HOH . J 6 HOH A 16 111 35 HOH HOH . J 6 HOH A 17 112 36 HOH HOH . J 6 HOH A 18 113 38 HOH HOH . J 6 HOH A 19 114 39 HOH HOH . J 6 HOH A 20 115 40 HOH HOH . J 6 HOH A 21 116 41 HOH HOH . J 6 HOH A 22 117 44 HOH HOH . J 6 HOH A 23 118 45 HOH HOH . J 6 HOH A 24 119 48 HOH HOH . J 6 HOH A 25 120 49 HOH HOH . J 6 HOH A 26 121 54 HOH HOH . J 6 HOH A 27 122 56 HOH HOH . J 6 HOH A 28 123 57 HOH HOH . J 6 HOH A 29 124 60 HOH HOH . J 6 HOH A 30 125 61 HOH HOH . J 6 HOH A 31 126 63 HOH HOH . J 6 HOH A 32 127 64 HOH HOH . J 6 HOH A 33 128 65 HOH HOH . J 6 HOH A 34 129 66 HOH HOH . J 6 HOH A 35 130 67 HOH HOH . J 6 HOH A 36 131 69 HOH HOH . J 6 HOH A 37 132 70 HOH HOH . J 6 HOH A 38 133 74 HOH HOH . J 6 HOH A 39 134 76 HOH HOH . J 6 HOH A 40 135 81 HOH HOH . J 6 HOH A 41 136 82 HOH HOH . J 6 HOH A 42 137 83 HOH HOH . J 6 HOH A 43 138 85 HOH HOH . J 6 HOH A 44 139 88 HOH HOH . J 6 HOH A 45 140 91 HOH HOH . J 6 HOH A 46 141 93 HOH HOH . J 6 HOH A 47 142 96 HOH HOH . J 6 HOH A 48 143 98 HOH HOH . J 6 HOH A 49 144 100 HOH HOH . J 6 HOH A 50 145 104 HOH HOH . J 6 HOH A 51 146 106 HOH HOH . J 6 HOH A 52 147 109 HOH HOH . J 6 HOH A 53 148 112 HOH HOH . J 6 HOH A 54 149 115 HOH HOH . J 6 HOH A 55 150 116 HOH HOH . J 6 HOH A 56 151 117 HOH HOH . J 6 HOH A 57 152 121 HOH HOH . J 6 HOH A 58 153 123 HOH HOH . J 6 HOH A 59 154 126 HOH HOH . J 6 HOH A 60 155 130 HOH HOH . J 6 HOH A 61 156 132 HOH HOH . J 6 HOH A 62 157 133 HOH HOH . J 6 HOH A 63 158 134 HOH HOH . J 6 HOH A 64 159 139 HOH HOH . J 6 HOH A 65 160 140 HOH HOH . J 6 HOH A 66 161 142 HOH HOH . J 6 HOH A 67 162 145 HOH HOH . J 6 HOH A 68 163 146 HOH HOH . J 6 HOH A 69 164 148 HOH HOH . J 6 HOH A 70 165 149 HOH HOH . J 6 HOH A 71 166 152 HOH HOH . J 6 HOH A 72 167 154 HOH HOH . J 6 HOH A 73 168 158 HOH HOH . J 6 HOH A 74 169 159 HOH HOH . J 6 HOH A 75 170 160 HOH HOH . J 6 HOH A 76 171 161 HOH HOH . J 6 HOH A 77 172 162 HOH HOH . J 6 HOH A 78 173 164 HOH HOH . J 6 HOH A 79 174 166 HOH HOH . J 6 HOH A 80 175 168 HOH HOH . J 6 HOH A 81 176 170 HOH HOH . J 6 HOH A 82 177 171 HOH HOH . J 6 HOH A 83 178 181 HOH HOH . J 6 HOH A 84 179 182 HOH HOH . J 6 HOH A 85 180 62 HOH HOH . J 6 HOH A 86 181 97 HOH HOH . K 6 HOH B 1 95 3 HOH HOH . K 6 HOH B 2 96 4 HOH HOH . K 6 HOH B 3 97 5 HOH HOH . K 6 HOH B 4 98 8 HOH HOH . K 6 HOH B 5 99 9 HOH HOH . K 6 HOH B 6 100 11 HOH HOH . K 6 HOH B 7 101 14 HOH HOH . K 6 HOH B 8 102 17 HOH HOH . K 6 HOH B 9 103 18 HOH HOH . K 6 HOH B 10 104 20 HOH HOH . K 6 HOH B 11 105 21 HOH HOH . K 6 HOH B 12 106 23 HOH HOH . K 6 HOH B 13 107 24 HOH HOH . K 6 HOH B 14 108 25 HOH HOH . K 6 HOH B 15 109 26 HOH HOH . K 6 HOH B 16 110 27 HOH HOH . K 6 HOH B 17 111 30 HOH HOH . K 6 HOH B 18 112 33 HOH HOH . K 6 HOH B 19 113 37 HOH HOH . K 6 HOH B 20 114 42 HOH HOH . K 6 HOH B 21 115 43 HOH HOH . K 6 HOH B 22 116 46 HOH HOH . K 6 HOH B 23 117 47 HOH HOH . K 6 HOH B 24 118 50 HOH HOH . K 6 HOH B 25 119 51 HOH HOH . K 6 HOH B 26 120 52 HOH HOH . K 6 HOH B 27 121 53 HOH HOH . K 6 HOH B 28 122 55 HOH HOH . K 6 HOH B 29 123 58 HOH HOH . K 6 HOH B 30 124 59 HOH HOH . K 6 HOH B 31 126 68 HOH HOH . K 6 HOH B 32 127 71 HOH HOH . K 6 HOH B 33 128 72 HOH HOH . K 6 HOH B 34 129 73 HOH HOH . K 6 HOH B 35 130 75 HOH HOH . K 6 HOH B 36 131 77 HOH HOH . K 6 HOH B 37 132 78 HOH HOH . K 6 HOH B 38 133 79 HOH HOH . K 6 HOH B 39 134 80 HOH HOH . K 6 HOH B 40 135 84 HOH HOH . K 6 HOH B 41 136 86 HOH HOH . K 6 HOH B 42 137 87 HOH HOH . K 6 HOH B 43 138 89 HOH HOH . K 6 HOH B 44 139 90 HOH HOH . K 6 HOH B 45 140 92 HOH HOH . K 6 HOH B 46 141 94 HOH HOH . K 6 HOH B 47 142 95 HOH HOH . K 6 HOH B 48 144 99 HOH HOH . K 6 HOH B 49 145 101 HOH HOH . K 6 HOH B 50 146 102 HOH HOH . K 6 HOH B 51 147 103 HOH HOH . K 6 HOH B 52 148 105 HOH HOH . K 6 HOH B 53 149 107 HOH HOH . K 6 HOH B 54 150 108 HOH HOH . K 6 HOH B 55 151 110 HOH HOH . K 6 HOH B 56 152 111 HOH HOH . K 6 HOH B 57 153 113 HOH HOH . K 6 HOH B 58 154 114 HOH HOH . K 6 HOH B 59 155 118 HOH HOH . K 6 HOH B 60 156 119 HOH HOH . K 6 HOH B 61 157 120 HOH HOH . K 6 HOH B 62 158 122 HOH HOH . K 6 HOH B 63 159 124 HOH HOH . K 6 HOH B 64 160 125 HOH HOH . K 6 HOH B 65 161 127 HOH HOH . K 6 HOH B 66 162 128 HOH HOH . K 6 HOH B 67 163 129 HOH HOH . K 6 HOH B 68 164 131 HOH HOH . K 6 HOH B 69 165 135 HOH HOH . K 6 HOH B 70 166 136 HOH HOH . K 6 HOH B 71 167 137 HOH HOH . K 6 HOH B 72 168 138 HOH HOH . K 6 HOH B 73 169 141 HOH HOH . K 6 HOH B 74 170 143 HOH HOH . K 6 HOH B 75 171 144 HOH HOH . K 6 HOH B 76 172 147 HOH HOH . K 6 HOH B 77 173 150 HOH HOH . K 6 HOH B 78 174 151 HOH HOH . K 6 HOH B 79 175 153 HOH HOH . K 6 HOH B 80 176 155 HOH HOH . K 6 HOH B 81 177 156 HOH HOH . K 6 HOH B 82 178 157 HOH HOH . K 6 HOH B 83 179 163 HOH HOH . K 6 HOH B 84 180 165 HOH HOH . K 6 HOH B 85 181 167 HOH HOH . K 6 HOH B 86 182 169 HOH HOH . K 6 HOH B 87 183 172 HOH HOH . K 6 HOH B 88 184 173 HOH HOH . K 6 HOH B 89 185 174 HOH HOH . K 6 HOH B 90 186 175 HOH HOH . K 6 HOH B 91 187 176 HOH HOH . K 6 HOH B 92 188 177 HOH HOH . K 6 HOH B 93 189 178 HOH HOH . K 6 HOH B 94 190 179 HOH HOH . K 6 HOH B 95 191 180 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x 18.281 _atom_site.Cartn_y -8.095 _atom_site.Cartn_z -11.512 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.95 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 93 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #