data_3D10 # _model_server_result.job_id eXHV022clNpkSlqIxs4-5A _model_server_result.datetime_utc '2024-10-25 20:33:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d10 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":92}' # _entry.id 3D10 # _exptl.entry_id 3D10 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.08 _cell.angle_gamma 90 _cell.entry_id 3D10 _cell.length_a 34.75 _cell.length_b 58.18 _cell.length_c 47.85 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D10 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 16 A HIS 15 1_555 E ZN ZN . A ZN 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc2 A O SER 19 A SER 18 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc3 A O GLU 22 A GLU 21 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc4 A O ASP 24 A ASP 23 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc5 A NE2 HIS 26 A HIS 25 1_555 E ZN ZN . A ZN 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc6 A O LYS 27 A LYS 26 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc7 A OE1 GLU 32 A GLU 31 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc8 A OE2 GLU 32 A GLU 31 1_555 D CA CA . A CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc9 A OD1 ASP 62 A ASP 61 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc10 A OD2 ASP 64 A ASP 63 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc11 A OD1 ASP 66 A ASP 65 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc12 A O GLU 68 A GLU 67 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc13 A OE1 GLU 73 A GLU 72 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc14 A OE2 GLU 73 A GLU 72 1_555 C CA CA . A CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc15 A NE2 HIS 86 A HIS 85 1_555 F ZN ZN . A ZN 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc16 A OE2 GLU 90 A GLU 89 1_555 F ZN ZN . A ZN 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc17 A OE1 GLU 90 A GLU 89 1_555 F ZN ZN . A ZN 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc18 C CA CA . A CA 92 1_555 J O HOH . A HOH 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc19 D CA CA . A CA 93 1_555 J O HOH . A HOH 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc20 E ZN ZN . A ZN 94 1_555 B NE2 HIS 86 B HIS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc21 E ZN ZN . A ZN 94 1_555 B OE1 GLU 90 B GLU 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc22 F ZN ZN . A ZN 95 1_555 B NE2 HIS 16 B HIS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc23 F ZN ZN . A ZN 95 1_555 B NE2 HIS 26 B HIS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? metalc ? metalc24 B O SER 19 B SER 18 1_555 G CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc25 B O GLU 22 B GLU 21 1_555 G CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc26 B O ASP 24 B ASP 23 1_555 G CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc27 B O LYS 27 B LYS 26 1_555 G CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc28 B OE1 GLU 32 B GLU 31 1_555 G CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc29 B OE2 GLU 32 B GLU 31 1_555 G CA CA . B CA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc30 B OD2 ASP 64 B ASP 63 1_555 H CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc31 B OD1 ASP 66 B ASP 65 1_555 H CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc32 B O GLU 68 B GLU 67 1_555 H CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc33 B OE1 GLU 73 B GLU 72 1_555 H CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc34 B OE2 GLU 73 B GLU 72 1_555 H CA CA . B CA 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc35 G CA CA . B CA 92 1_555 K O HOH . B HOH 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc36 H CA CA . B CA 93 1_555 K O HOH . B HOH 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3D10 _atom_sites.fract_transf_matrix[1][1] 0.028777 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.011092 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017188 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022397 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 92 1 CA CA . D 2 CA A 1 93 2 CA CA . E 3 ZN A 1 94 5 ZN ZN . F 3 ZN A 1 95 6 ZN ZN . G 2 CA B 1 92 3 CA CA . H 2 CA B 1 93 4 CA CA . I 4 PGE B 1 94 1 PGE PGE . J 5 HOH A 1 96 1 HOH HOH . J 5 HOH A 2 97 2 HOH HOH . J 5 HOH A 3 98 4 HOH HOH . J 5 HOH A 4 99 5 HOH HOH . J 5 HOH A 5 100 7 HOH HOH . J 5 HOH A 6 101 8 HOH HOH . J 5 HOH A 7 102 10 HOH HOH . J 5 HOH A 8 103 11 HOH HOH . J 5 HOH A 9 104 13 HOH HOH . J 5 HOH A 10 105 15 HOH HOH . J 5 HOH A 11 106 16 HOH HOH . J 5 HOH A 12 107 20 HOH HOH . J 5 HOH A 13 108 21 HOH HOH . J 5 HOH A 14 109 23 HOH HOH . J 5 HOH A 15 110 24 HOH HOH . J 5 HOH A 16 111 25 HOH HOH . J 5 HOH A 17 112 30 HOH HOH . J 5 HOH A 18 113 31 HOH HOH . J 5 HOH A 19 114 32 HOH HOH . J 5 HOH A 20 115 40 HOH HOH . J 5 HOH A 21 116 41 HOH HOH . J 5 HOH A 22 117 42 HOH HOH . J 5 HOH A 23 118 46 HOH HOH . J 5 HOH A 24 119 47 HOH HOH . J 5 HOH A 25 120 48 HOH HOH . J 5 HOH A 26 121 50 HOH HOH . J 5 HOH A 27 122 51 HOH HOH . J 5 HOH A 28 123 53 HOH HOH . J 5 HOH A 29 124 54 HOH HOH . J 5 HOH A 30 125 55 HOH HOH . J 5 HOH A 31 126 56 HOH HOH . J 5 HOH A 32 127 58 HOH HOH . J 5 HOH A 33 128 61 HOH HOH . J 5 HOH A 34 129 67 HOH HOH . J 5 HOH A 35 130 68 HOH HOH . J 5 HOH A 36 131 73 HOH HOH . J 5 HOH A 37 132 75 HOH HOH . J 5 HOH A 38 133 81 HOH HOH . J 5 HOH A 39 134 82 HOH HOH . J 5 HOH A 40 135 83 HOH HOH . J 5 HOH A 41 136 85 HOH HOH . J 5 HOH A 42 137 86 HOH HOH . J 5 HOH A 43 138 87 HOH HOH . J 5 HOH A 44 139 88 HOH HOH . J 5 HOH A 45 140 89 HOH HOH . J 5 HOH A 46 141 90 HOH HOH . J 5 HOH A 47 142 91 HOH HOH . J 5 HOH A 48 143 92 HOH HOH . J 5 HOH A 49 144 95 HOH HOH . J 5 HOH A 50 145 96 HOH HOH . J 5 HOH A 51 146 97 HOH HOH . J 5 HOH A 52 147 99 HOH HOH . J 5 HOH A 53 148 102 HOH HOH . J 5 HOH A 54 149 106 HOH HOH . J 5 HOH A 55 150 108 HOH HOH . J 5 HOH A 56 151 109 HOH HOH . J 5 HOH A 57 152 110 HOH HOH . J 5 HOH A 58 153 112 HOH HOH . J 5 HOH A 59 154 113 HOH HOH . J 5 HOH A 60 155 114 HOH HOH . J 5 HOH A 61 156 123 HOH HOH . J 5 HOH A 62 157 124 HOH HOH . J 5 HOH A 63 158 125 HOH HOH . J 5 HOH A 64 159 130 HOH HOH . J 5 HOH A 65 160 132 HOH HOH . J 5 HOH A 66 161 134 HOH HOH . J 5 HOH A 67 162 136 HOH HOH . J 5 HOH A 68 163 137 HOH HOH . J 5 HOH A 69 164 140 HOH HOH . J 5 HOH A 70 165 141 HOH HOH . J 5 HOH A 71 166 147 HOH HOH . J 5 HOH A 72 167 152 HOH HOH . J 5 HOH A 73 168 72 HOH HOH . K 5 HOH B 1 107 17 HOH HOH . K 5 HOH B 2 108 36 HOH HOH . K 5 HOH B 3 109 111 HOH HOH . K 5 HOH B 4 110 139 HOH HOH . K 5 HOH B 5 111 3 HOH HOH . K 5 HOH B 6 112 6 HOH HOH . K 5 HOH B 7 113 9 HOH HOH . K 5 HOH B 8 114 12 HOH HOH . K 5 HOH B 9 115 14 HOH HOH . K 5 HOH B 10 116 18 HOH HOH . K 5 HOH B 11 117 19 HOH HOH . K 5 HOH B 12 118 22 HOH HOH . K 5 HOH B 13 119 26 HOH HOH . K 5 HOH B 14 120 27 HOH HOH . K 5 HOH B 15 121 28 HOH HOH . K 5 HOH B 16 122 29 HOH HOH . K 5 HOH B 17 123 33 HOH HOH . K 5 HOH B 18 124 34 HOH HOH . K 5 HOH B 19 125 35 HOH HOH . K 5 HOH B 20 126 37 HOH HOH . K 5 HOH B 21 127 38 HOH HOH . K 5 HOH B 22 128 39 HOH HOH . K 5 HOH B 23 129 43 HOH HOH . K 5 HOH B 24 130 44 HOH HOH . K 5 HOH B 25 131 45 HOH HOH . K 5 HOH B 26 132 49 HOH HOH . K 5 HOH B 27 133 52 HOH HOH . K 5 HOH B 28 134 57 HOH HOH . K 5 HOH B 29 135 59 HOH HOH . K 5 HOH B 30 136 60 HOH HOH . K 5 HOH B 31 137 62 HOH HOH . K 5 HOH B 32 138 63 HOH HOH . K 5 HOH B 33 139 64 HOH HOH . K 5 HOH B 34 140 65 HOH HOH . K 5 HOH B 35 141 66 HOH HOH . K 5 HOH B 36 142 69 HOH HOH . K 5 HOH B 37 143 70 HOH HOH . K 5 HOH B 38 144 71 HOH HOH . K 5 HOH B 39 145 74 HOH HOH . K 5 HOH B 40 146 76 HOH HOH . K 5 HOH B 41 147 77 HOH HOH . K 5 HOH B 42 148 78 HOH HOH . K 5 HOH B 43 149 79 HOH HOH . K 5 HOH B 44 150 80 HOH HOH . K 5 HOH B 45 151 84 HOH HOH . K 5 HOH B 46 152 93 HOH HOH . K 5 HOH B 47 153 94 HOH HOH . K 5 HOH B 48 154 98 HOH HOH . K 5 HOH B 49 155 100 HOH HOH . K 5 HOH B 50 156 101 HOH HOH . K 5 HOH B 51 157 103 HOH HOH . K 5 HOH B 52 158 104 HOH HOH . K 5 HOH B 53 159 105 HOH HOH . K 5 HOH B 54 160 107 HOH HOH . K 5 HOH B 55 161 115 HOH HOH . K 5 HOH B 56 162 116 HOH HOH . K 5 HOH B 57 163 117 HOH HOH . K 5 HOH B 58 164 118 HOH HOH . K 5 HOH B 59 165 119 HOH HOH . K 5 HOH B 60 166 120 HOH HOH . K 5 HOH B 61 167 121 HOH HOH . K 5 HOH B 62 168 122 HOH HOH . K 5 HOH B 63 169 126 HOH HOH . K 5 HOH B 64 170 127 HOH HOH . K 5 HOH B 65 171 128 HOH HOH . K 5 HOH B 66 172 129 HOH HOH . K 5 HOH B 67 173 131 HOH HOH . K 5 HOH B 68 174 133 HOH HOH . K 5 HOH B 69 175 135 HOH HOH . K 5 HOH B 70 176 138 HOH HOH . K 5 HOH B 71 177 142 HOH HOH . K 5 HOH B 72 178 143 HOH HOH . K 5 HOH B 73 179 144 HOH HOH . K 5 HOH B 74 180 145 HOH HOH . K 5 HOH B 75 181 146 HOH HOH . K 5 HOH B 76 182 148 HOH HOH . K 5 HOH B 77 183 149 HOH HOH . K 5 HOH B 78 184 150 HOH HOH . K 5 HOH B 79 185 151 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 17.893 _atom_site.Cartn_y 4.853 _atom_site.Cartn_z 13.162 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 92 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #