data_3D14 # _model_server_result.job_id RRQWvbNmtva7NOTMUNlKoA _model_server_result.datetime_utc '2024-11-22 07:34:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d14 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3D14 # _exptl.entry_id 3D14 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 464.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{5-[2-(thieno[3,2-d]pyrimidin-4-ylamino)ethyl]-1,3-thiazol-2-yl}-3-[3-(trifluoromethyl)phenyl]urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3D14 _cell.length_a 82.363 _cell.length_b 82.363 _cell.length_c 174.398 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D14 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H15 F3 N6 O S2' _chem_comp.formula_weight 464.487 _chem_comp.id AK1 _chem_comp.mon_nstd_flag . _chem_comp.name 1-{5-[2-(thieno[3,2-d]pyrimidin-4-ylamino)ethyl]-1,3-thiazol-2-yl}-3-[3-(trifluoromethyl)phenyl]urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N30 C31 AK1 sing 1 n y C31 C27 AK1 doub 2 n y C31 H31 AK1 sing 3 n n C27 S28 AK1 sing 4 n y C27 C12 AK1 sing 5 n n F26 C23 AK1 sing 6 n n C23 F24 AK1 sing 7 n n C23 C18 AK1 sing 8 n n C23 F25 AK1 sing 9 n n C17 C15 AK1 doub 10 n y C17 C18 AK1 sing 11 n y C17 H17 AK1 sing 12 n n C21 C20 AK1 doub 13 n y C19 C20 AK1 sing 14 n y C20 H20 AK1 sing 15 n n N22 C15 AK1 sing 16 n n C15 C21 AK1 sing 17 n y C12 C11 AK1 sing 18 n n C12 H12 AK1 sing 19 n n C12 H12A AK1 sing 20 n n N13 C14 AK1 sing 21 n n N22 C14 AK1 sing 22 n n C14 O16 AK1 doub 23 n n C11 N10 AK1 sing 24 n n C11 H11 AK1 sing 25 n n C11 H11A AK1 sing 26 n n N8 C9 AK1 doub 27 n y C9 N10 AK1 sing 28 n n C9 C4 AK1 sing 29 n y C7 N8 AK1 sing 30 n y C7 N6 AK1 doub 31 n y C7 H7 AK1 sing 32 n n C3 C4 AK1 doub 33 n y C4 S5 AK1 sing 34 n y N6 C3 AK1 sing 35 n y C3 C2 AK1 sing 36 n y C2 C1 AK1 doub 37 n y C2 H2 AK1 sing 38 n n C1 S5 AK1 sing 39 n y C1 H1 AK1 sing 40 n n N30 C29 AK1 doub 41 n y N13 C29 AK1 sing 42 n n C29 S28 AK1 sing 43 n y N10 HN10 AK1 sing 44 n n C18 C19 AK1 doub 45 n y C19 H19 AK1 sing 46 n n C21 H21 AK1 sing 47 n n N22 HN22 AK1 sing 48 n n N13 HN13 AK1 sing 49 n n # _atom_sites.entry_id 3D14 _atom_sites.fract_transf_matrix[1][1] 0.012141 _atom_sites.fract_transf_matrix[1][2] 0.00701 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005734 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AK1 A 1 1 1 AK1 FRG . C 3 HOH A 1 405 1 HOH HOH . C 3 HOH A 2 406 2 HOH HOH . C 3 HOH A 3 407 3 HOH HOH . C 3 HOH A 4 408 4 HOH HOH . C 3 HOH A 5 409 5 HOH HOH . C 3 HOH A 6 410 6 HOH HOH . C 3 HOH A 7 411 7 HOH HOH . C 3 HOH A 8 412 8 HOH HOH . C 3 HOH A 9 413 9 HOH HOH . C 3 HOH A 10 414 10 HOH HOH . C 3 HOH A 11 415 11 HOH HOH . C 3 HOH A 12 416 12 HOH HOH . C 3 HOH A 13 417 13 HOH HOH . C 3 HOH A 14 418 14 HOH HOH . C 3 HOH A 15 419 15 HOH HOH . C 3 HOH A 16 420 16 HOH HOH . C 3 HOH A 17 421 17 HOH HOH . C 3 HOH A 18 422 18 HOH HOH . C 3 HOH A 19 423 19 HOH HOH . C 3 HOH A 20 424 20 HOH HOH . C 3 HOH A 21 425 21 HOH HOH . C 3 HOH A 22 426 22 HOH HOH . C 3 HOH A 23 427 23 HOH HOH . C 3 HOH A 24 428 24 HOH HOH . C 3 HOH A 25 429 25 HOH HOH . C 3 HOH A 26 430 27 HOH HOH . C 3 HOH A 27 431 28 HOH HOH . C 3 HOH A 28 432 29 HOH HOH . C 3 HOH A 29 433 30 HOH HOH . C 3 HOH A 30 434 31 HOH HOH . C 3 HOH A 31 435 32 HOH HOH . C 3 HOH A 32 436 33 HOH HOH . C 3 HOH A 33 437 34 HOH HOH . C 3 HOH A 34 438 35 HOH HOH . C 3 HOH A 35 439 36 HOH HOH . C 3 HOH A 36 440 37 HOH HOH . C 3 HOH A 37 441 38 HOH HOH . C 3 HOH A 38 442 39 HOH HOH . C 3 HOH A 39 443 40 HOH HOH . C 3 HOH A 40 444 41 HOH HOH . C 3 HOH A 41 445 42 HOH HOH . C 3 HOH A 42 446 43 HOH HOH . C 3 HOH A 43 447 44 HOH HOH . C 3 HOH A 44 448 45 HOH HOH . C 3 HOH A 45 449 46 HOH HOH . C 3 HOH A 46 450 47 HOH HOH . C 3 HOH A 47 451 48 HOH HOH . C 3 HOH A 48 452 49 HOH HOH . C 3 HOH A 49 453 50 HOH HOH . C 3 HOH A 50 454 51 HOH HOH . C 3 HOH A 51 455 52 HOH HOH . C 3 HOH A 52 456 53 HOH HOH . C 3 HOH A 53 457 54 HOH HOH . C 3 HOH A 54 458 55 HOH HOH . C 3 HOH A 55 459 56 HOH HOH . C 3 HOH A 56 460 57 HOH HOH . C 3 HOH A 57 461 58 HOH HOH . C 3 HOH A 58 462 59 HOH HOH . C 3 HOH A 59 463 60 HOH HOH . C 3 HOH A 60 464 61 HOH HOH . C 3 HOH A 61 465 62 HOH HOH . C 3 HOH A 62 466 63 HOH HOH . C 3 HOH A 63 467 64 HOH HOH . C 3 HOH A 64 468 65 HOH HOH . C 3 HOH A 65 469 66 HOH HOH . C 3 HOH A 66 470 67 HOH HOH . C 3 HOH A 67 471 68 HOH HOH . C 3 HOH A 68 472 69 HOH HOH . C 3 HOH A 69 473 70 HOH HOH . C 3 HOH A 70 474 71 HOH HOH . C 3 HOH A 71 475 72 HOH HOH . C 3 HOH A 72 476 73 HOH HOH . C 3 HOH A 73 477 74 HOH HOH . C 3 HOH A 74 478 75 HOH HOH . C 3 HOH A 75 479 76 HOH HOH . C 3 HOH A 76 480 77 HOH HOH . C 3 HOH A 77 481 78 HOH HOH . C 3 HOH A 78 482 80 HOH HOH . C 3 HOH A 79 483 81 HOH HOH . C 3 HOH A 80 484 82 HOH HOH . C 3 HOH A 81 485 83 HOH HOH . C 3 HOH A 82 486 84 HOH HOH . C 3 HOH A 83 487 85 HOH HOH . C 3 HOH A 84 488 86 HOH HOH . C 3 HOH A 85 489 87 HOH HOH . C 3 HOH A 86 490 88 HOH HOH . C 3 HOH A 87 491 89 HOH HOH . C 3 HOH A 88 492 91 HOH HOH . C 3 HOH A 89 493 92 HOH HOH . C 3 HOH A 90 494 93 HOH HOH . C 3 HOH A 91 495 94 HOH HOH . C 3 HOH A 92 496 95 HOH HOH . C 3 HOH A 93 497 96 HOH HOH . C 3 HOH A 94 498 97 HOH HOH . C 3 HOH A 95 499 98 HOH HOH . C 3 HOH A 96 500 99 HOH HOH . C 3 HOH A 97 501 100 HOH HOH . C 3 HOH A 98 502 101 HOH HOH . C 3 HOH A 99 503 102 HOH HOH . C 3 HOH A 100 504 103 HOH HOH . C 3 HOH A 101 505 104 HOH HOH . C 3 HOH A 102 506 105 HOH HOH . C 3 HOH A 103 507 106 HOH HOH . C 3 HOH A 104 508 107 HOH HOH . C 3 HOH A 105 509 108 HOH HOH . C 3 HOH A 106 510 109 HOH HOH . C 3 HOH A 107 511 110 HOH HOH . C 3 HOH A 108 512 111 HOH HOH . C 3 HOH A 109 513 112 HOH HOH . C 3 HOH A 110 514 113 HOH HOH . C 3 HOH A 111 515 114 HOH HOH . C 3 HOH A 112 516 115 HOH HOH . C 3 HOH A 113 517 116 HOH HOH . C 3 HOH A 114 518 117 HOH HOH . C 3 HOH A 115 519 118 HOH HOH . C 3 HOH A 116 520 119 HOH HOH . C 3 HOH A 117 521 120 HOH HOH . C 3 HOH A 118 522 121 HOH HOH . C 3 HOH A 119 523 122 HOH HOH . C 3 HOH A 120 524 123 HOH HOH . C 3 HOH A 121 525 124 HOH HOH . C 3 HOH A 122 526 125 HOH HOH . C 3 HOH A 123 527 126 HOH HOH . C 3 HOH A 124 528 127 HOH HOH . C 3 HOH A 125 529 128 HOH HOH . C 3 HOH A 126 530 129 HOH HOH . C 3 HOH A 127 531 130 HOH HOH . C 3 HOH A 128 532 131 HOH HOH . C 3 HOH A 129 533 132 HOH HOH . C 3 HOH A 130 534 133 HOH HOH . C 3 HOH A 131 535 134 HOH HOH . C 3 HOH A 132 536 135 HOH HOH . C 3 HOH A 133 537 136 HOH HOH . C 3 HOH A 134 538 137 HOH HOH . C 3 HOH A 135 539 138 HOH HOH . C 3 HOH A 136 540 139 HOH HOH . C 3 HOH A 137 541 140 HOH HOH . C 3 HOH A 138 542 141 HOH HOH . C 3 HOH A 139 543 142 HOH HOH . C 3 HOH A 140 544 143 HOH HOH . C 3 HOH A 141 545 145 HOH HOH . C 3 HOH A 142 546 146 HOH HOH . C 3 HOH A 143 547 147 HOH HOH . C 3 HOH A 144 548 148 HOH HOH . C 3 HOH A 145 549 150 HOH HOH . C 3 HOH A 146 550 151 HOH HOH . C 3 HOH A 147 551 152 HOH HOH . C 3 HOH A 148 552 153 HOH HOH . C 3 HOH A 149 553 154 HOH HOH . C 3 HOH A 150 554 155 HOH HOH . C 3 HOH A 151 555 156 HOH HOH . C 3 HOH A 152 556 157 HOH HOH . C 3 HOH A 153 557 158 HOH HOH . C 3 HOH A 154 558 159 HOH HOH . C 3 HOH A 155 559 160 HOH HOH . C 3 HOH A 156 560 161 HOH HOH . C 3 HOH A 157 561 162 HOH HOH . C 3 HOH A 158 562 164 HOH HOH . C 3 HOH A 159 563 165 HOH HOH . C 3 HOH A 160 564 166 HOH HOH . C 3 HOH A 161 565 167 HOH HOH . C 3 HOH A 162 566 168 HOH HOH . C 3 HOH A 163 567 169 HOH HOH . C 3 HOH A 164 568 170 HOH HOH . C 3 HOH A 165 569 171 HOH HOH . C 3 HOH A 166 570 172 HOH HOH . C 3 HOH A 167 571 173 HOH HOH . C 3 HOH A 168 572 174 HOH HOH . C 3 HOH A 169 573 175 HOH HOH . C 3 HOH A 170 574 177 HOH HOH . C 3 HOH A 171 575 178 HOH HOH . C 3 HOH A 172 576 179 HOH HOH . C 3 HOH A 173 577 180 HOH HOH . C 3 HOH A 174 578 181 HOH HOH . C 3 HOH A 175 579 182 HOH HOH . C 3 HOH A 176 580 183 HOH HOH . C 3 HOH A 177 581 184 HOH HOH . C 3 HOH A 178 582 186 HOH HOH . C 3 HOH A 179 583 187 HOH HOH . C 3 HOH A 180 584 188 HOH HOH . C 3 HOH A 181 585 189 HOH HOH . C 3 HOH A 182 586 190 HOH HOH . C 3 HOH A 183 587 191 HOH HOH . C 3 HOH A 184 588 192 HOH HOH . C 3 HOH A 185 589 193 HOH HOH . C 3 HOH A 186 590 194 HOH HOH . C 3 HOH A 187 591 195 HOH HOH . C 3 HOH A 188 592 196 HOH HOH . C 3 HOH A 189 593 197 HOH HOH . C 3 HOH A 190 594 198 HOH HOH . C 3 HOH A 191 595 199 HOH HOH . C 3 HOH A 192 596 200 HOH HOH . C 3 HOH A 193 597 201 HOH HOH . C 3 HOH A 194 598 202 HOH HOH . C 3 HOH A 195 599 203 HOH HOH . C 3 HOH A 196 600 204 HOH HOH . C 3 HOH A 197 601 205 HOH HOH . C 3 HOH A 198 602 206 HOH HOH . C 3 HOH A 199 603 207 HOH HOH . C 3 HOH A 200 604 208 HOH HOH . C 3 HOH A 201 605 209 HOH HOH . C 3 HOH A 202 606 210 HOH HOH . C 3 HOH A 203 607 211 HOH HOH . C 3 HOH A 204 608 212 HOH HOH . C 3 HOH A 205 609 213 HOH HOH . C 3 HOH A 206 610 215 HOH HOH . C 3 HOH A 207 611 216 HOH HOH . C 3 HOH A 208 612 217 HOH HOH . C 3 HOH A 209 613 218 HOH HOH . C 3 HOH A 210 614 220 HOH HOH . C 3 HOH A 211 615 221 HOH HOH . C 3 HOH A 212 616 222 HOH HOH . C 3 HOH A 213 617 223 HOH HOH . C 3 HOH A 214 618 224 HOH HOH . C 3 HOH A 215 619 226 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C31 AK1 . . . B 2 -9.059 27.557 76.628 1 22.51 ? C31 AK1 1 A 1 HETATM 2 C C27 AK1 . . . B 2 -8.738 27.502 77.938 1 23.73 ? C27 AK1 1 A 1 HETATM 3 C C23 AK1 . . . B 2 -14.261 18.446 78.112 1 28.87 ? C23 AK1 1 A 1 HETATM 4 C C17 AK1 . . . B 2 -12.955 20.597 77.859 1 23.55 ? C17 AK1 1 A 1 HETATM 5 C C20 AK1 . . . B 2 -12.673 20.777 80.627 1 27.76 ? C20 AK1 1 A 1 HETATM 6 C C15 AK1 . . . B 2 -12.257 21.679 78.414 1 25.84 ? C15 AK1 1 A 1 HETATM 7 C C12 AK1 . . . B 2 -7.954 28.594 78.672 1 22.75 ? C12 AK1 1 A 1 HETATM 8 C C14 AK1 . . . B 2 -10.97 23.659 77.979 1 25.85 ? C14 AK1 1 A 1 HETATM 9 C C11 AK1 . . . B 2 -6.675 28.064 79.33 1 21.06 ? C11 AK1 1 A 1 HETATM 10 C C9 AK1 . . . B 2 -5.137 30.038 79.603 1 22.74 ? C9 AK1 1 A 1 HETATM 11 C C7 AK1 . . . B 2 -4.061 30.959 77.586 1 19.46 ? C7 AK1 1 A 1 HETATM 12 C C4 AK1 . . . B 2 -4.524 30.978 80.386 1 18.86 ? C4 AK1 1 A 1 HETATM 13 C C3 AK1 . . . B 2 -3.699 31.879 79.857 1 21.05 ? C3 AK1 1 A 1 HETATM 14 C C2 AK1 . . . B 2 -3.195 32.703 80.674 1 21.28 ? C2 AK1 1 A 1 HETATM 15 C C1 AK1 . . . B 2 -3.577 32.506 81.877 1 21.34 ? C1 AK1 1 A 1 HETATM 16 F F26 AK1 . . . B 2 -14.625 18.703 76.87 1 30.34 ? F26 AK1 1 A 1 HETATM 17 N N30 AK1 . . . B 2 -9.725 26.536 76.238 1 21.93 ? N30 AK1 1 A 1 HETATM 18 C C29 AK1 . . . B 2 -9.961 25.687 77.236 1 22.62 ? C29 AK1 1 A 1 HETATM 19 S S28 AK1 . . . B 2 -9.302 26.184 78.584 1 23.56 ? S28 AK1 1 A 1 HETATM 20 N N6 AK1 . . . B 2 -3.478 31.88 78.541 1 21.35 ? N6 AK1 1 A 1 HETATM 21 N N10 AK1 . . . B 2 -5.98 29.124 80.099 1 18.6 ? N10 AK1 1 A 1 HETATM 22 N N8 AK1 . . . B 2 -4.935 30.015 78.275 1 21.32 ? N8 AK1 1 A 1 HETATM 23 S S5 AK1 . . . B 2 -4.621 31.209 82.052 1 21.18 ? S5 AK1 1 A 1 HETATM 24 F F24 AK1 . . . B 2 -13.509 17.365 78.136 1 35.35 ? F24 AK1 1 A 1 HETATM 25 F F25 AK1 . . . B 2 -15.339 18.221 78.832 1 28.75 ? F25 AK1 1 A 1 HETATM 26 C C18 AK1 . . . B 2 -13.503 19.611 78.687 1 25.93 ? C18 AK1 1 A 1 HETATM 27 C C19 AK1 . . . B 2 -13.361 19.704 80.068 1 26.53 ? C19 AK1 1 A 1 HETATM 28 C C21 AK1 . . . B 2 -12.125 21.759 79.805 1 26.6 ? C21 AK1 1 A 1 HETATM 29 N N22 AK1 . . . B 2 -11.735 22.624 77.593 1 25.76 ? N22 AK1 1 A 1 HETATM 30 N N13 AK1 . . . B 2 -10.687 24.572 77.043 1 22.8 ? N13 AK1 1 A 1 HETATM 31 O O16 AK1 . . . B 2 -10.541 23.765 79.123 1 25.36 ? O16 AK1 1 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 635 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #