data_3D15 # _model_server_result.job_id Htralun4L-iOvcxdhiMRlw _model_server_result.datetime_utc '2025-07-01 22:49:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3d15 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3D15 # _exptl.entry_id 3D15 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.934 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(3-chlorophenyl)-3-{5-[2-(thieno[3,2-d]pyrimidin-4-ylamino)ethyl]-1,3-thiazol-2-yl}urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3D15 _cell.length_a 82.353 _cell.length_b 82.353 _cell.length_c 171.999 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3D15 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H15 Cl N6 O S2' _chem_comp.formula_weight 430.934 _chem_comp.id AK2 _chem_comp.mon_nstd_flag . _chem_comp.name 1-(3-chlorophenyl)-3-{5-[2-(thieno[3,2-d]pyrimidin-4-ylamino)ethyl]-1,3-thiazol-2-yl}urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 C27 AK2 doub 1 n y C27 C22 AK2 sing 2 n y C27 H27 AK2 sing 3 n n C26 C25 AK2 sing 4 n y C26 H26 AK2 sing 5 n n C25 C24 AK2 doub 6 n y C24 CL28 AK2 sing 7 n n C24 C23 AK2 sing 8 n y C22 C23 AK2 doub 9 n y C23 H23 AK2 sing 10 n n C22 N20 AK2 sing 11 n n C13 C17 AK2 doub 12 n y C17 N16 AK2 sing 13 n y C17 H17 AK2 sing 14 n n S14 C15 AK2 sing 15 n y C15 N18 AK2 sing 16 n n C15 N16 AK2 doub 17 n y C11 C12 AK2 sing 18 n n C12 C13 AK2 sing 19 n n C12 H12 AK2 sing 20 n n C12 H12A AK2 sing 21 n n S14 C13 AK2 sing 22 n y N10 C11 AK2 sing 23 n n C11 H11 AK2 sing 24 n n C11 H11A AK2 sing 25 n n C8 C9 AK2 doub 26 n y C9 C2 AK2 sing 27 n y C9 H9 AK2 sing 28 n n S7 C8 AK2 sing 29 n y C8 H8 AK2 sing 30 n n N3 C4 AK2 doub 31 n y N5 C4 AK2 sing 32 n y C4 H4 AK2 sing 33 n n C1 C6 AK2 sing 34 n y N10 C6 AK2 sing 35 n n C6 N5 AK2 doub 36 n y C1 C2 AK2 doub 37 n y C2 N3 AK2 sing 38 n y S7 C1 AK2 sing 39 n y C25 H25 AK2 sing 40 n n C19 N20 AK2 sing 41 n n N20 HN20 AK2 sing 42 n n O21 C19 AK2 doub 43 n n C19 N18 AK2 sing 44 n n N18 HN18 AK2 sing 45 n n N10 HN10 AK2 sing 46 n n # _atom_sites.entry_id 3D15 _atom_sites.fract_transf_matrix[1][1] 0.012143 _atom_sites.fract_transf_matrix[1][2] 0.007011 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014021 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005814 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AK2 A 1 1 1 AK2 FRG . C 3 HOH A 1 409 1 HOH HOH . C 3 HOH A 2 410 2 HOH HOH . C 3 HOH A 3 411 3 HOH HOH . C 3 HOH A 4 412 4 HOH HOH . C 3 HOH A 5 413 5 HOH HOH . C 3 HOH A 6 414 6 HOH HOH . C 3 HOH A 7 415 7 HOH HOH . C 3 HOH A 8 416 8 HOH HOH . C 3 HOH A 9 417 9 HOH HOH . C 3 HOH A 10 418 10 HOH HOH . C 3 HOH A 11 419 11 HOH HOH . C 3 HOH A 12 420 12 HOH HOH . C 3 HOH A 13 421 13 HOH HOH . C 3 HOH A 14 422 14 HOH HOH . C 3 HOH A 15 423 15 HOH HOH . C 3 HOH A 16 424 16 HOH HOH . C 3 HOH A 17 425 17 HOH HOH . C 3 HOH A 18 426 18 HOH HOH . C 3 HOH A 19 427 19 HOH HOH . C 3 HOH A 20 428 20 HOH HOH . C 3 HOH A 21 429 21 HOH HOH . C 3 HOH A 22 430 23 HOH HOH . C 3 HOH A 23 431 24 HOH HOH . C 3 HOH A 24 432 25 HOH HOH . C 3 HOH A 25 433 26 HOH HOH . C 3 HOH A 26 434 27 HOH HOH . C 3 HOH A 27 435 28 HOH HOH . C 3 HOH A 28 436 29 HOH HOH . C 3 HOH A 29 437 30 HOH HOH . C 3 HOH A 30 438 31 HOH HOH . C 3 HOH A 31 439 32 HOH HOH . C 3 HOH A 32 440 33 HOH HOH . C 3 HOH A 33 441 34 HOH HOH . C 3 HOH A 34 442 35 HOH HOH . C 3 HOH A 35 443 36 HOH HOH . C 3 HOH A 36 444 38 HOH HOH . C 3 HOH A 37 445 39 HOH HOH . C 3 HOH A 38 446 40 HOH HOH . C 3 HOH A 39 447 41 HOH HOH . C 3 HOH A 40 448 42 HOH HOH . C 3 HOH A 41 449 43 HOH HOH . C 3 HOH A 42 450 44 HOH HOH . C 3 HOH A 43 451 45 HOH HOH . C 3 HOH A 44 452 46 HOH HOH . C 3 HOH A 45 453 47 HOH HOH . C 3 HOH A 46 454 48 HOH HOH . C 3 HOH A 47 455 49 HOH HOH . C 3 HOH A 48 456 50 HOH HOH . C 3 HOH A 49 457 51 HOH HOH . C 3 HOH A 50 458 52 HOH HOH . C 3 HOH A 51 459 53 HOH HOH . C 3 HOH A 52 460 54 HOH HOH . C 3 HOH A 53 461 55 HOH HOH . C 3 HOH A 54 462 56 HOH HOH . C 3 HOH A 55 463 57 HOH HOH . C 3 HOH A 56 464 58 HOH HOH . C 3 HOH A 57 465 59 HOH HOH . C 3 HOH A 58 466 60 HOH HOH . C 3 HOH A 59 467 61 HOH HOH . C 3 HOH A 60 468 62 HOH HOH . C 3 HOH A 61 469 63 HOH HOH . C 3 HOH A 62 470 64 HOH HOH . C 3 HOH A 63 471 65 HOH HOH . C 3 HOH A 64 472 66 HOH HOH . C 3 HOH A 65 473 67 HOH HOH . C 3 HOH A 66 474 68 HOH HOH . C 3 HOH A 67 475 69 HOH HOH . C 3 HOH A 68 476 70 HOH HOH . C 3 HOH A 69 477 71 HOH HOH . C 3 HOH A 70 478 72 HOH HOH . C 3 HOH A 71 479 73 HOH HOH . C 3 HOH A 72 480 74 HOH HOH . C 3 HOH A 73 481 76 HOH HOH . C 3 HOH A 74 482 77 HOH HOH . C 3 HOH A 75 483 78 HOH HOH . C 3 HOH A 76 484 79 HOH HOH . C 3 HOH A 77 485 80 HOH HOH . C 3 HOH A 78 486 81 HOH HOH . C 3 HOH A 79 487 83 HOH HOH . C 3 HOH A 80 488 84 HOH HOH . C 3 HOH A 81 489 85 HOH HOH . C 3 HOH A 82 490 86 HOH HOH . C 3 HOH A 83 491 88 HOH HOH . C 3 HOH A 84 492 89 HOH HOH . C 3 HOH A 85 493 91 HOH HOH . C 3 HOH A 86 494 92 HOH HOH . C 3 HOH A 87 495 93 HOH HOH . C 3 HOH A 88 496 94 HOH HOH . C 3 HOH A 89 497 95 HOH HOH . C 3 HOH A 90 498 96 HOH HOH . C 3 HOH A 91 499 97 HOH HOH . C 3 HOH A 92 500 98 HOH HOH . C 3 HOH A 93 501 99 HOH HOH . C 3 HOH A 94 502 100 HOH HOH . C 3 HOH A 95 503 103 HOH HOH . C 3 HOH A 96 504 104 HOH HOH . C 3 HOH A 97 505 105 HOH HOH . C 3 HOH A 98 506 106 HOH HOH . C 3 HOH A 99 507 107 HOH HOH . C 3 HOH A 100 508 110 HOH HOH . C 3 HOH A 101 509 111 HOH HOH . C 3 HOH A 102 510 112 HOH HOH . C 3 HOH A 103 511 113 HOH HOH . C 3 HOH A 104 512 115 HOH HOH . C 3 HOH A 105 513 116 HOH HOH . C 3 HOH A 106 514 117 HOH HOH . C 3 HOH A 107 515 118 HOH HOH . C 3 HOH A 108 516 119 HOH HOH . C 3 HOH A 109 517 120 HOH HOH . C 3 HOH A 110 518 121 HOH HOH . C 3 HOH A 111 519 122 HOH HOH . C 3 HOH A 112 520 123 HOH HOH . C 3 HOH A 113 521 124 HOH HOH . C 3 HOH A 114 522 125 HOH HOH . C 3 HOH A 115 523 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 AK2 . . . B 2 10.792 20.501 7.95 1 53.42 ? C27 AK2 1 A 1 HETATM 2 C C26 AK2 . . . B 2 11.139 19.357 7.236 1 56.34 ? C26 AK2 1 A 1 HETATM 3 C C24 AK2 . . . B 2 12.895 18.937 8.818 1 55.42 ? C24 AK2 1 A 1 HETATM 4 C C23 AK2 . . . B 2 12.555 20.086 9.527 1 53.25 ? C23 AK2 1 A 1 HETATM 5 C C22 AK2 . . . B 2 11.496 20.872 9.101 1 51.34 ? C22 AK2 1 A 1 HETATM 6 C C17 AK2 . . . B 2 8.93 27.173 10.617 1 47.9 ? C17 AK2 1 A 1 HETATM 7 C C15 AK2 . . . B 2 9.676 25.21 10.13 1 48.92 ? C15 AK2 1 A 1 HETATM 8 C C12 AK2 . . . B 2 7.759 28.129 8.663 1 41.68 ? C12 AK2 1 A 1 HETATM 9 C C13 AK2 . . . B 2 8.55 27.059 9.413 1 48.58 ? C13 AK2 1 A 1 HETATM 10 C C11 AK2 . . . B 2 6.446 27.569 8.099 1 42.32 ? C11 AK2 1 A 1 HETATM 11 C C9 AK2 . . . B 2 3.252 32.456 6.727 1 44.41 ? C9 AK2 1 A 1 HETATM 12 C C8 AK2 . . . B 2 3.695 32.321 5.55 1 45.87 ? C8 AK2 1 A 1 HETATM 13 C C4 AK2 . . . B 2 4.059 30.599 9.626 1 44.09 ? C4 AK2 1 A 1 HETATM 14 C C6 AK2 . . . B 2 5.071 29.602 7.734 1 42.89 ? C6 AK2 1 A 1 HETATM 15 C C2 AK2 . . . B 2 3.713 31.58 7.548 1 42.7 ? C2 AK2 1 A 1 HETATM 16 C C1 AK2 . . . B 2 4.487 30.612 6.949 1 43.31 ? C1 AK2 1 A 1 HETATM 17 CL CL28 AK2 . . . B 2 14.258 17.946 9.404 1 55.28 ? CL28 AK2 1 A 1 HETATM 18 C C25 AK2 . . . B 2 12.198 18.562 7.675 1 55.5 ? C25 AK2 1 A 1 HETATM 19 N N20 AK2 . . . B 2 11.183 22.016 9.864 1 52.04 ? N20 AK2 1 A 1 HETATM 20 C C19 AK2 . . . B 2 10.504 23.078 9.434 1 51.34 ? C19 AK2 1 A 1 HETATM 21 O O21 AK2 . . . B 2 10.076 23.126 8.281 1 49.82 ? O21 AK2 1 A 1 HETATM 22 N N18 AK2 . . . B 2 10.328 24.052 10.343 1 49.57 ? N18 AK2 1 A 1 HETATM 23 N N16 AK2 . . . B 2 9.54 26.144 11.063 1 48.02 ? N16 AK2 1 A 1 HETATM 24 S S14 AK2 . . . B 2 9.004 25.687 8.797 1 43.98 ? S14 AK2 1 A 1 HETATM 25 N N10 AK2 . . . B 2 5.864 28.608 7.238 1 45.8 ? N10 AK2 1 A 1 HETATM 26 N N5 AK2 . . . B 2 4.826 29.636 9.071 1 43.3 ? N5 AK2 1 A 1 HETATM 27 N N3 AK2 . . . B 2 3.504 31.575 8.883 1 44 ? N3 AK2 1 A 1 HETATM 28 S S7 AK2 . . . B 2 4.563 30.91 5.277 1 42.14 ? S7 AK2 1 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #